From bfa049d5d75ec0471c6f8a9aba82e7fdbed89698 Mon Sep 17 00:00:00 2001 From: agdamsbo <43278243+agdamsbo@users.noreply.github.com> Date: Wed, 11 Mar 2026 12:42:55 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20agdamsbo?= =?UTF-8?q?/FreesearchR@8935b0b2a4c2a843361fd3a7f9f284c0261fb7c5=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- CODE_OF_CONDUCT.html | 2 +- LICENSE.html | 2 +- QA.html | 2 +- ROADMAP.html | 2 +- SESSION.html | 286 ++++++++------------- SESSION.md | 19 -- articles/FreesearchR.html | 2 +- articles/data-types.html | 2 +- articles/missingness.html | 2 +- articles/session.html | 306 +++++++---------------- articles/session.md | 19 -- articles/visuals.html | 2 +- authors.html | 2 +- authors.md | 2 +- news/index.html | 3 +- news/index.md | 4 + pkgdown.yml | 2 +- reference/FreesearchR_palette.html | 2 +- reference/FreesearchR_theme.html | 2 +- reference/add_class_icon.html | 2 +- reference/add_sparkline.html | 2 +- reference/align_axes.html | 2 +- reference/all_but.html | 2 +- reference/append_column.html | 2 +- reference/append_list.html | 2 +- reference/apply_labels.html | 2 +- reference/argsstring2list.html | 2 +- reference/baseline_table.html | 2 +- reference/class_icons.html | 2 +- reference/clean_common_axis.html | 2 +- reference/clean_date.html | 2 +- reference/clean_sep.html | 2 +- reference/collapse_spaces.html | 2 +- reference/columnSelectInput.html | 2 +- reference/compare_missings.html | 2 +- reference/contrast_text.html | 2 +- reference/corr_pairs_validate.html | 2 +- reference/correlation_pairs.html | 2 +- reference/create-column.html | 2 +- reference/create_baseline.html | 2 +- reference/create_log_tics.html | 2 +- reference/create_overview_datagrid.html | 2 +- reference/cut-variable.html | 2 +- reference/cut_methods.html | 2 +- reference/cut_var.html | 2 +- reference/data-correlations.html | 2 +- reference/data-missings.html | 2 +- reference/data-plots.html | 4 +- reference/data-plots.md | 2 +- reference/data-summary.html | 2 +- reference/data_description.html | 2 +- reference/data_summary_gather.html | 2 +- reference/data_type.html | 2 +- reference/data_type_filter.html | 2 +- reference/data_types.html | 2 +- reference/default_format_arguments.html | 2 +- reference/default_parsing.html | 2 +- reference/detect_delimiter.html | 2 +- reference/dim_change_call.html | 2 +- reference/drop_empty_event.html | 2 +- reference/expression_string.html | 2 +- reference/extract_labels.html | 2 +- reference/factor_new_levels_labels.html | 2 +- reference/factorize.html | 2 +- reference/file_export.html | 2 +- reference/format_writer.html | 2 +- reference/get_data_packages.html | 2 +- reference/get_dimensions.html | 2 +- reference/get_fun_options.html | 2 +- reference/get_label.html | 2 +- reference/get_list_elements.html | 2 +- reference/get_plot_options.html | 2 +- reference/get_var_icon.html | 2 +- reference/getfun.html | 4 +- reference/getfun.md | 2 +- reference/gg_theme_export.html | 2 +- reference/gg_theme_shiny.html | 2 +- reference/ggeulerr.html | 2 +- reference/grepl_fix.html | 2 +- reference/if_not_missing.html | 2 +- reference/import-file-type.html | 2 +- reference/import-file.html | 2 +- reference/import-file_module.html | 2 +- reference/import-globalenv.html | 2 +- reference/index_embed.html | 2 +- reference/is_any_class.html | 2 +- reference/is_consecutive.html | 2 +- reference/is_datetime.html | 2 +- reference/is_identical_to_previous.html | 2 +- reference/is_splittable.html | 2 +- reference/is_valid_redcap_url.html | 2 +- reference/is_valid_token.html | 2 +- reference/label_report.html | 2 +- reference/landing_page_ui.html | 2 +- reference/launch_FreesearchR.html | 2 +- reference/limit_data_size.html | 2 +- reference/limit_log.html | 2 +- reference/line_break.html | 2 +- reference/list_pkg_data.html | 2 +- reference/make_validation.html | 2 +- reference/make_validation_alerts.html | 2 +- reference/mcar_validate.html | 2 +- reference/merge_expression.html | 2 +- reference/merge_long.html | 2 +- reference/missing_fraction.html | 2 +- reference/missings_logic_across.html | 2 +- reference/missings_validate.html | 2 +- reference/modify_qmd.html | 2 +- reference/names2val.html | 2 +- reference/obs_filter_validate.html | 2 +- reference/overview_vars.html | 2 +- reference/pipe_string.html | 2 +- reference/plot.tbl_regression.html | 2 +- reference/plot_euler.html | 2 +- reference/plot_euler_single.html | 2 +- reference/plot_sankey_single.html | 2 +- reference/possible_functions.html | 2 +- reference/possible_plots.html | 2 +- reference/read_input.html | 2 +- reference/redcap_read_shiny_module.html | 2 +- reference/regression_model.html | 2 +- reference/regression_table.html | 2 +- reference/regression_table_create.html | 2 +- reference/remove_empty_attr.html | 2 +- reference/remove_empty_cols.html | 2 +- reference/remove_nested_list.html | 2 +- reference/repeated_instruments.html | 2 +- reference/restore_labels.html | 2 +- reference/selectInputIcon.html | 2 +- reference/separate_string.html | 2 +- reference/set_column_label.html | 2 +- reference/show_data.html | 2 +- reference/simple_snake.html | 2 +- reference/sort_by.html | 2 +- reference/specify_qmd_format.html | 2 +- reference/split-string.html | 2 +- reference/subset_types.html | 2 +- reference/supported_functions.html | 2 +- reference/supported_plots.html | 2 +- reference/symmetrical_scale_x_log10.html | 2 +- reference/tbl_merge.html | 2 +- reference/type_icons.html | 2 +- reference/ui_elements.html | 2 +- reference/unique_names.html | 2 +- reference/unique_short.html | 2 +- reference/update-factor.html | 2 +- reference/update-variables.html | 2 +- reference/update_variables_datagrid.html | 2 +- reference/validation.html | 2 +- reference/validation_lib.html | 2 +- reference/vars_filter_validate.html | 2 +- reference/vectorSelectInput.html | 2 +- reference/vertical_stacked_bars.html | 2 +- reference/visual-summary.html | 2 +- reference/wide2long.html | 2 +- reference/with_labels.html | 2 +- reference/wrap_plot_list.html | 2 +- reference/write_quarto.html | 2 +- search.json | 2 +- 159 files changed, 362 insertions(+), 585 deletions(-) diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index dd7cc624..2a25a88d 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -38,7 +38,7 @@

Contributor Covenant Code of Conduct

- Source: CODE_OF_CONDUCT.md + Source: CODE_OF_CONDUCT.md
diff --git a/LICENSE.html b/LICENSE.html index 3cc6500e..70466689 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -38,7 +38,7 @@

GNU Affero General Public License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/QA.html b/QA.html index 27d37875..d97d8c1e 100644 --- a/QA.html +++ b/QA.html @@ -38,7 +38,7 @@

Questions and answers

- Source: QA.md + Source: QA.md
diff --git a/ROADMAP.html b/ROADMAP.html index 56eca97a..5425e7a0 100644 --- a/ROADMAP.html +++ b/ROADMAP.html @@ -38,7 +38,7 @@

Project roadmap

- Source: ROADMAP.md + Source: ROADMAP.md
diff --git a/SESSION.html b/SESSION.html index 8fef7dde..959435df 100644 --- a/SESSION.html +++ b/SESSION.html @@ -38,7 +38,7 @@

NA

- Source: SESSION.md + Source: SESSION.md
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+DEoptimR 1.1-4 2025-07-27 CRAN (R 4.5.0) -desc +desc 1.4.3 2023-12-10 CRAN (R 4.5.0) -devtools +devtools 2.4.6 2025-10-03 CRAN (R 4.5.0) -DHARMa +DHARMa 0.4.7 2024-10-18 CRAN (R 4.5.0) -digest +digest 0.6.39 2025-11-19 CRAN (R 4.5.2) -dockerfiler -0.2.5 -2025-05-07 -CRAN (R 4.5.0) doParallel 1.0.17 2022-02-07 @@ -330,98 +306,82 @@ 0.1.4 2025-05-09 CRAN (R 4.5.0) -gert -2.3.1 -2026-01-11 -CRAN (R 4.5.2) -ggalluvial +ggalluvial 0.12.5 2023-02-22 CRAN (R 4.5.0) -ggcorrplot +ggcorrplot 0.1.4.1 2023-09-05 CRAN (R 4.5.0) -ggforce +ggforce 0.5.0 2025-06-18 CRAN (R 4.5.0) -ggplot2 +ggplot2 4.0.2 2026-02-03 CRAN (R 4.5.2) -ggridges +ggridges 0.5.7 2025-08-27 CRAN (R 4.5.0) -ggstats +ggstats 0.12.0 2025-12-22 CRAN (R 4.5.2) -gh -1.5.0 -2025-05-26 -CRAN (R 4.5.0) -gitcreds -0.1.2 -2022-09-08 -CRAN (R 4.5.0) -glue +glue 1.8.0 2024-09-30 CRAN (R 4.5.0) -gridExtra +gridExtra 2.3 2017-09-09 CRAN (R 4.5.0) -gt +gt 1.3.0 2026-01-22 CRAN (R 4.5.2) -gtable +gtable 0.3.6 2024-10-25 CRAN (R 4.5.0) 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2026-02-05 CRAN (R 4.5.2) -roxygen2 +roxygen2 7.3.3 2025-09-03 CRAN (R 4.5.0) -rpart +rpart 4.1.24 2025-01-07 CRAN (R 4.5.2) -rprojroot +rprojroot 2.1.1 2025-08-26 CRAN (R 4.5.0) -rsconnect +rsconnect 1.7.0 2025-12-06 CRAN (R 4.5.2) -rstudioapi +rstudioapi 0.18.0 2026-01-16 CRAN (R 4.5.2) -S7 +S7 0.2.1 2025-11-14 CRAN (R 4.5.2) -sass +sass 0.4.10 2025-04-11 CRAN (R 4.5.0) -scales +scales 1.4.0 2025-04-24 CRAN (R 4.5.0) -see +see 0.13.0 2026-01-30 CRAN (R 4.5.2) -sessioninfo +sessioninfo 1.2.3 2025-02-05 CRAN (R 4.5.0) -shiny +shiny 1.13.0 2026-02-20 CRAN (R 4.5.2) -shiny.i18n +shiny.i18n 0.3.0 2023-01-16 CRAN (R 4.5.0) -shiny2docker -0.0.3 -2025-06-28 -CRAN (R 4.5.0) shinybusy 0.3.3 2024-03-09 @@ -814,70 +750,62 @@ 25.9.2 2025-09-30 CRAN (R 4.5.0) -sys -3.4.3 -2024-10-04 -CRAN (R 4.5.0) -systemfonts +systemfonts 1.3.1 2025-10-01 CRAN (R 4.5.0) -testthat +testthat 3.3.2 2026-01-11 CRAN (R 4.5.2) -textshaping +textshaping 1.0.4 2025-10-10 CRAN (R 4.5.0) -thematic +thematic 0.1.8 2025-09-29 CRAN (R 4.5.0) -tibble +tibble 3.3.1 2026-01-11 CRAN (R 4.5.2) -tidyr +tidyr 1.3.2 2025-12-19 CRAN (R 4.5.2) -tidyselect +tidyselect 1.2.1 2024-03-11 CRAN (R 4.5.0) -timechange +timechange 0.4.0 2026-01-29 CRAN (R 4.5.2) -toastui +toastui 0.4.0 2025-04-03 CRAN (R 4.5.0) -tweenr +tweenr 2.0.3 2024-02-26 CRAN (R 4.5.0) -twosamples +twosamples 2.0.1 2023-06-23 CRAN (R 4.5.0) -tzdb +tzdb 0.5.0 2025-03-15 CRAN (R 4.5.0) -usethis +usethis 3.2.1 2025-09-06 CRAN (R 4.5.0) -uuid +uuid 1.2-2 2026-01-23 CRAN (R 4.5.2) -V8 -8.0.1 -2025-10-10 -CRAN (R 4.5.0) vctrs 0.7.1 2026-01-23 @@ -918,11 +846,7 @@ 2.3.12 2025-12-10 CRAN (R 4.5.2) -yesno -0.1.3 -2024-07-26 -CRAN (R 4.5.0) -zip +zip 2.3.3 2025-05-13 CRAN (R 4.5.0) diff --git a/SESSION.md b/SESSION.md index b7871226..4836b9fb 100644 --- a/SESSION.md +++ b/SESSION.md @@ -11,8 +11,6 @@ | apexcharter | 0.4.5 | 2026-01-07 | CRAN (R 4.5.2) | | askpass | 1.2.1 | 2024-10-04 | CRAN (R 4.5.0) | | assertthat | 0.2.1 | 2019-03-21 | CRAN (R 4.5.0) | -| attachment | 0.4.5 | 2025-03-14 | CRAN (R 4.5.0) | -| attempt | 0.3.1 | 2020-05-03 | CRAN (R 4.5.0) | | backports | 1.5.0 | 2024-05-23 | CRAN (R 4.5.0) | | base64enc | 0.1-6 | 2026-02-02 | CRAN (R 4.5.2) | | bayestestR | 0.17.0 | 2025-08-29 | CRAN (R 4.5.0) | @@ -31,7 +29,6 @@ | cardx | 0.3.2 | 2026-02-05 | CRAN (R 4.5.2) | | caTools | 1.18.3 | 2024-09-04 | CRAN (R 4.5.0) | | cellranger | 1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | -| cffr | 1.2.1 | 2026-01-12 | CRAN (R 4.5.2) | | checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | | class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.2) | | classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | @@ -41,8 +38,6 @@ | colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | | commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | | crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | -| credentials | 2.0.3 | 2025-09-12 | CRAN (R 4.5.0) | -| curl | 7.0.0 | 2025-08-19 | CRAN (R 4.5.0) | | data.table | 1.18.2.1 | 2026-01-27 | CRAN (R 4.5.2) | | datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.5.0) | | datawizard | 1.3.0 | 2025-10-11 | CRAN (R 4.5.0) | @@ -51,7 +46,6 @@ | devtools | 2.4.6 | 2025-10-03 | CRAN (R 4.5.0) | | DHARMa | 0.4.7 | 2024-10-18 | CRAN (R 4.5.0) | | digest | 0.6.39 | 2025-11-19 | CRAN (R 4.5.2) | -| dockerfiler | 0.2.5 | 2025-05-07 | CRAN (R 4.5.0) | | doParallel | 1.0.17 | 2022-02-07 | CRAN (R 4.5.0) | | dplyr | 1.2.0 | 2026-02-03 | CRAN (R 4.5.2) | | DT | 0.34.0 | 2025-09-02 | CRAN (R 4.5.0) | @@ -78,15 +72,12 @@ | fs | 1.6.6 | 2025-04-12 | CRAN (R 4.5.0) | | gdtools | 0.5.0 | 2026-02-09 | CRAN (R 4.5.2) | | generics | 0.1.4 | 2025-05-09 | CRAN (R 4.5.0) | -| gert | 2.3.1 | 2026-01-11 | CRAN (R 4.5.2) | | ggalluvial | 0.12.5 | 2023-02-22 | CRAN (R 4.5.0) | | ggcorrplot | 0.1.4.1 | 2023-09-05 | CRAN (R 4.5.0) | | ggforce | 0.5.0 | 2025-06-18 | CRAN (R 4.5.0) | | ggplot2 | 4.0.2 | 2026-02-03 | CRAN (R 4.5.2) | | ggridges | 0.5.7 | 2025-08-27 | CRAN (R 4.5.0) | | ggstats | 0.12.0 | 2025-12-22 | CRAN (R 4.5.2) | -| gh | 1.5.0 | 2025-05-26 | CRAN (R 4.5.0) | -| gitcreds | 0.1.2 | 2022-09-08 | CRAN (R 4.5.0) | | glue | 1.8.0 | 2024-09-30 | CRAN (R 4.5.0) | | gridExtra | 2.3 | 2017-09-09 | CRAN (R 4.5.0) | | gt | 1.3.0 | 2026-01-22 | CRAN (R 4.5.2) | @@ -100,24 +91,20 @@ | htmltools | 0.5.9 | 2025-12-04 | CRAN (R 4.5.2) | | htmlwidgets | 1.6.4 | 2023-12-06 | CRAN (R 4.5.0) | | httpuv | 1.6.16 | 2025-04-16 | CRAN (R 4.5.0) | -| httr2 | 1.2.2 | 2025-12-08 | CRAN (R 4.5.2) | | IDEAFilter | 0.2.1 | 2025-07-29 | CRAN (R 4.5.0) | | insight | 1.4.6 | 2026-02-04 | CRAN (R 4.5.2) | | iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.5.0) | | jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.5.0) | | jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | -| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.5.0) | | KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.2) | | keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | | knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | | later | 1.4.6 | 2026-02-13 | CRAN (R 4.5.2) | | lattice | 0.22-7 | 2025-04-02 | CRAN (R 4.5.2) | | lifecycle | 1.0.5 | 2026-01-08 | CRAN (R 4.5.2) | -| litedown | 0.9 | 2025-12-18 | CRAN (R 4.5.2) | | lme4 | 1.1-38 | 2025-12-02 | CRAN (R 4.5.2) | | lubridate | 1.9.5 | 2026-02-04 | CRAN (R 4.5.2) | | magrittr | 2.0.4 | 2025-09-12 | CRAN (R 4.5.0) | -| markdown | 2.0 | 2025-03-23 | CRAN (R 4.5.0) | | MASS | 7.3-65 | 2025-02-28 | CRAN (R 4.5.0) | | Matrix | 1.7-4 | 2025-08-28 | CRAN (R 4.5.2) | | memoise | 2.0.1 | 2021-11-26 | CRAN (R 4.5.0) | @@ -133,7 +120,6 @@ | openssl | 2.3.4 | 2025-09-30 | CRAN (R 4.5.0) | | openxlsx2 | 1.23.1 | 2026-01-19 | CRAN (R 4.5.2) | | otel | 0.2.0 | 2025-08-29 | CRAN (R 4.5.0) | -| pak | 0.9.2 | 2025-12-22 | CRAN (R 4.5.2) | | parameters | 0.28.3 | 2025-11-25 | CRAN (R 4.5.2) | | patchwork | 1.3.2 | 2025-08-25 | CRAN (R 4.5.0) | | pbmcapply | 1.5.1 | 2022-04-28 | CRAN (R 4.5.0) | @@ -157,7 +143,6 @@ | R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | | ragg | 1.5.0 | 2025-09-02 | CRAN (R 4.5.0) | | rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | -| rappdirs | 0.3.4 | 2026-01-17 | CRAN (R 4.5.2) | | rbibutils | 2.4.1 | 2026-01-21 | CRAN (R 4.5.2) | | RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.5.0) | | Rcpp | 1.1.1 | 2026-01-10 | CRAN (R 4.5.2) | @@ -190,7 +175,6 @@ | sessioninfo | 1.2.3 | 2025-02-05 | CRAN (R 4.5.0) | | shiny | 1.13.0 | 2026-02-20 | CRAN (R 4.5.2) | | shiny.i18n | 0.3.0 | 2023-01-16 | CRAN (R 4.5.0) | -| shiny2docker | 0.0.3 | 2025-06-28 | CRAN (R 4.5.0) | | shinybusy | 0.3.3 | 2024-03-09 | CRAN (R 4.5.0) | | shinyjs | 2.1.1 | 2026-01-15 | CRAN (R 4.5.2) | | shinyTime | 1.0.3 | 2022-08-19 | CRAN (R 4.5.0) | @@ -199,7 +183,6 @@ | stringi | 1.8.7 | 2025-03-27 | CRAN (R 4.5.0) | | stringr | 1.6.0 | 2025-11-04 | CRAN (R 4.5.0) | | stRoke | 25.9.2 | 2025-09-30 | CRAN (R 4.5.0) | -| sys | 3.4.3 | 2024-10-04 | CRAN (R 4.5.0) | | systemfonts | 1.3.1 | 2025-10-01 | CRAN (R 4.5.0) | | testthat | 3.3.2 | 2026-01-11 | CRAN (R 4.5.2) | | textshaping | 1.0.4 | 2025-10-10 | CRAN (R 4.5.0) | @@ -214,7 +197,6 @@ | tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | | usethis | 3.2.1 | 2025-09-06 | CRAN (R 4.5.0) | | uuid | 1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | -| V8 | 8.0.1 | 2025-10-10 | CRAN (R 4.5.0) | | vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | | viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | | viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | @@ -225,5 +207,4 @@ | xml2 | 1.5.2 | 2026-01-17 | CRAN (R 4.5.2) | | xtable | 1.8-4 | 2019-04-21 | CRAN (R 4.5.0) | | yaml | 2.3.12 | 2025-12-10 | CRAN (R 4.5.2) | -| yesno | 0.1.3 | 2024-07-26 | CRAN (R 4.5.0) | | zip | 2.3.3 | 2025-05-13 | CRAN (R 4.5.0) | diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html index d6daa227..05fecdb8 100644 --- a/articles/FreesearchR.html +++ b/articles/FreesearchR.html @@ -73,7 +73,7 @@

FreesearchR

- Source: vignettes/FreesearchR.Rmd + Source: vignettes/FreesearchR.Rmd
FreesearchR.Rmd
diff --git a/articles/data-types.html b/articles/data-types.html index 3b28a855..945d7c02 100644 --- a/articles/data-types.html +++ b/articles/data-types.html @@ -73,7 +73,7 @@

Data types

- Source: vignettes/data-types.Rmd + Source: vignettes/data-types.Rmd
data-types.Rmd
diff --git a/articles/missingness.html b/articles/missingness.html index 07826f41..2862e145 100644 --- a/articles/missingness.html +++ b/articles/missingness.html @@ -73,7 +73,7 @@

Missingness in data

- Source: vignettes/missingness.Rmd + Source: vignettes/missingness.Rmd
missingness.Rmd
diff --git a/articles/session.html b/articles/session.html index 7e9251bd..41452782 100644 --- a/articles/session.html +++ b/articles/session.html @@ -73,7 +73,7 @@

Session info

- Source: vignettes/session.Rmd + Source: vignettes/session.Rmd
session.Rmd
@@ -186,18 +186,6 @@ packages and the latest build info.

CRAN (R 4.5.0) -attachment -0.4.5 -2025-03-14 -CRAN (R 4.5.0) - - -attempt -0.3.1 -2020-05-03 -CRAN (R 4.5.0) - - backports 1.5.0 2024-05-23 @@ -306,131 +294,107 @@ packages and the latest build info.

CRAN (R 4.5.0) -cffr -1.2.1 -2026-01-12 -CRAN (R 4.5.2) - - checkmate 2.3.4 2026-02-03 CRAN (R 4.5.2) - + class 7.3-23 2025-01-01 CRAN (R 4.5.2) - + classInt 0.4-11 2025-01-08 CRAN (R 4.5.0) - + cli 3.6.5 2025-04-23 CRAN (R 4.5.0) - + cluster 2.1.8.2 2026-02-05 CRAN (R 4.5.2) - + codetools 0.2-20 2024-03-31 CRAN (R 4.5.2) - + colorspace 2.1-2 2025-09-22 CRAN (R 4.5.0) - + commonmark 2.0.0 2025-07-07 CRAN (R 4.5.0) - + crayon 1.5.3 2024-06-20 CRAN (R 4.5.0) - -credentials -2.0.3 -2025-09-12 -CRAN (R 4.5.0) - -curl -7.0.0 -2025-08-19 -CRAN (R 4.5.0) - - data.table 1.18.2.1 2026-01-27 CRAN (R 4.5.2) - + datamods 1.5.3 2024-10-02 CRAN (R 4.5.0) - + datawizard 1.3.0 2025-10-11 CRAN (R 4.5.0) - + DEoptimR 1.1-4 2025-07-27 CRAN (R 4.5.0) - + desc 1.4.3 2023-12-10 CRAN (R 4.5.0) - + devtools 2.4.6 2025-10-03 CRAN (R 4.5.0) - + DHARMa 0.4.7 2024-10-18 CRAN (R 4.5.0) - + digest 0.6.39 2025-11-19 CRAN (R 4.5.2) - -dockerfiler -0.2.5 -2025-05-07 -CRAN (R 4.5.0) - doParallel 1.0.17 @@ -588,143 +552,119 @@ packages and the latest build info.

CRAN (R 4.5.0) -gert -2.3.1 -2026-01-11 -CRAN (R 4.5.2) - - ggalluvial 0.12.5 2023-02-22 CRAN (R 4.5.0) - + ggcorrplot 0.1.4.1 2023-09-05 CRAN (R 4.5.0) - + ggforce 0.5.0 2025-06-18 CRAN (R 4.5.0) - + ggplot2 4.0.2 2026-02-03 CRAN (R 4.5.2) - + ggridges 0.5.7 2025-08-27 CRAN (R 4.5.0) - + ggstats 0.12.0 2025-12-22 CRAN (R 4.5.2) - -gh -1.5.0 -2025-05-26 -CRAN (R 4.5.0) - -gitcreds -0.1.2 -2022-09-08 -CRAN (R 4.5.0) - - glue 1.8.0 2024-09-30 CRAN (R 4.5.0) - + gridExtra 2.3 2017-09-09 CRAN (R 4.5.0) - + gt 1.3.0 2026-01-22 CRAN (R 4.5.2) - + gtable 0.3.6 2024-10-25 CRAN (R 4.5.0) - + gtsummary 2.5.0 2025-12-05 CRAN (R 4.5.2) - + haven 2.5.5 2025-05-30 CRAN (R 4.5.0) - + here 1.0.2 2025-09-15 CRAN (R 4.5.0) - + Hmisc 5.2-5 2026-01-09 CRAN (R 4.5.2) - + hms 1.1.4 2025-10-17 CRAN (R 4.5.0) - + htmlTable 2.4.3 2024-07-21 CRAN (R 4.5.0) - + htmltools 0.5.9 2025-12-04 CRAN (R 4.5.2) - + htmlwidgets 1.6.4 2023-12-06 CRAN (R 4.5.0) - + httpuv 1.6.16 2025-04-16 CRAN (R 4.5.0) - -httr2 -1.2.2 -2025-12-08 -CRAN (R 4.5.2) - IDEAFilter 0.2.1 @@ -756,53 +696,41 @@ packages and the latest build info.

CRAN (R 4.5.0) -jsonvalidate -1.5.0 -2025-02-07 -CRAN (R 4.5.0) - - KernSmooth 2.23-26 2025-01-01 CRAN (R 4.5.2) - + keyring 1.4.1 2025-06-15 CRAN (R 4.5.0) - + knitr 1.51 2025-12-20 CRAN (R 4.5.2) - + later 1.4.6 2026-02-13 CRAN (R 4.5.2) - + lattice 0.22-7 2025-04-02 CRAN (R 4.5.2) - + lifecycle 1.0.5 2026-01-08 CRAN (R 4.5.2) - -litedown -0.9 -2025-12-18 -CRAN (R 4.5.2) - lme4 1.1-38 @@ -822,107 +750,95 @@ packages and the latest build info.

CRAN (R 4.5.0) -markdown -2.0 -2025-03-23 -CRAN (R 4.5.0) - - MASS 7.3-65 2025-02-28 CRAN (R 4.5.0) - + Matrix 1.7-4 2025-08-28 CRAN (R 4.5.2) - + memoise 2.0.1 2021-11-26 CRAN (R 4.5.0) - + mime 0.13 2025-03-17 CRAN (R 4.5.0) - + minqa 1.2.8 2024-08-17 CRAN (R 4.5.0) - + mvtnorm 1.3-3 2025-01-10 CRAN (R 4.5.0) - + NHANES 2.1.0 2015-07-02 CRAN (R 4.5.0) - + nlme 3.1-168 2025-03-31 CRAN (R 4.5.2) - + nloptr 2.2.1 2025-03-17 CRAN (R 4.5.0) - + nnet 7.3-20 2025-01-01 CRAN (R 4.5.2) - + officer 0.7.3 2026-01-16 CRAN (R 4.5.2) - + opdisDownsampling 1.0.1 2024-04-15 CRAN (R 4.5.0) - + openssl 2.3.4 2025-09-30 CRAN (R 4.5.0) - + openxlsx2 1.23.1 2026-01-19 CRAN (R 4.5.2) - + otel 0.2.0 2025-08-29 CRAN (R 4.5.0) - -pak -0.9.2 -2025-12-22 -CRAN (R 4.5.2) - parameters 0.28.3 @@ -1062,209 +978,197 @@ packages and the latest build info.

CRAN (R 4.5.0) -rappdirs -0.3.4 -2026-01-17 -CRAN (R 4.5.2) - - rbibutils 2.4.1 2026-01-21 CRAN (R 4.5.2) - + RColorBrewer 1.1-3 2022-04-03 CRAN (R 4.5.0) - + Rcpp 1.1.1 2026-01-10 CRAN (R 4.5.2) - + RcppArmadillo 15.2.3-1 2025-12-17 CRAN (R 4.5.2) - + Rdpack 2.6.6 2026-02-08 CRAN (R 4.5.2) - + reactable 0.4.5 2025-12-01 CRAN (R 4.5.2) - + readODS 2.3.2 2025-01-13 CRAN (R 4.5.0) - + readr 2.2.0 2026-02-19 CRAN (R 4.5.2) - + readxl 1.4.5 2025-03-07 CRAN (R 4.5.0) - + REDCapCAST 26.1.1 2026-01-29 CRAN (R 4.5.2) - + REDCapR 1.6.0 2025-10-08 CRAN (R 4.5.0) - + reformulas 0.4.4 2026-02-02 CRAN (R 4.5.2) - + remotes 2.5.0 2024-03-17 CRAN (R 4.5.0) - + rempsyc 0.2.0 2025-09-15 CRAN (R 4.5.0) - + renv 1.1.7 2026-01-27 CRAN (R 4.5.2) - + reshape2 1.4.5 2025-11-12 CRAN (R 4.5.0) - + rio 1.2.4 2025-09-26 CRAN (R 4.5.0) - + rlang 1.1.7 2026-01-09 CRAN (R 4.5.2) - + rmarkdown 2.30 2025-09-28 CRAN (R 4.5.0) - + robustbase 0.99-7 2026-02-05 CRAN (R 4.5.2) - + roxygen2 7.3.3 2025-09-03 CRAN (R 4.5.0) - + rpart 4.1.24 2025-01-07 CRAN (R 4.5.2) - + rprojroot 2.1.1 2025-08-26 CRAN (R 4.5.0) - + rsconnect 1.7.0 2025-12-06 CRAN (R 4.5.2) - + rstudioapi 0.18.0 2026-01-16 CRAN (R 4.5.2) - + S7 0.2.1 2025-11-14 CRAN (R 4.5.2) - + sass 0.4.10 2025-04-11 CRAN (R 4.5.0) - + scales 1.4.0 2025-04-24 CRAN (R 4.5.0) - + see 0.13.0 2026-01-30 CRAN (R 4.5.2) - + sessioninfo 1.2.3 2025-02-05 CRAN (R 4.5.0) - + shiny 1.13.0 2026-02-20 CRAN (R 4.5.2) - + shiny.i18n 0.3.0 2023-01-16 CRAN (R 4.5.0) - -shiny2docker -0.0.3 -2025-06-28 -CRAN (R 4.5.0) - shinybusy 0.3.3 @@ -1314,101 +1218,89 @@ packages and the latest build info.

CRAN (R 4.5.0) -sys -3.4.3 -2024-10-04 -CRAN (R 4.5.0) - - systemfonts 1.3.1 2025-10-01 CRAN (R 4.5.0) - + testthat 3.3.2 2026-01-11 CRAN (R 4.5.2) - + textshaping 1.0.4 2025-10-10 CRAN (R 4.5.0) - + thematic 0.1.8 2025-09-29 CRAN (R 4.5.0) - + tibble 3.3.1 2026-01-11 CRAN (R 4.5.2) - + tidyr 1.3.2 2025-12-19 CRAN (R 4.5.2) - + tidyselect 1.2.1 2024-03-11 CRAN (R 4.5.0) - + timechange 0.4.0 2026-01-29 CRAN (R 4.5.2) - + toastui 0.4.0 2025-04-03 CRAN (R 4.5.0) - + tweenr 2.0.3 2024-02-26 CRAN (R 4.5.0) - + twosamples 2.0.1 2023-06-23 CRAN (R 4.5.0) - + tzdb 0.5.0 2025-03-15 CRAN (R 4.5.0) - + usethis 3.2.1 2025-09-06 CRAN (R 4.5.0) - + uuid 1.2-2 2026-01-23 CRAN (R 4.5.2) - -V8 -8.0.1 -2025-10-10 -CRAN (R 4.5.0) - vctrs 0.7.1 @@ -1470,12 +1362,6 @@ packages and the latest build info.

CRAN (R 4.5.2) -yesno -0.1.3 -2024-07-26 -CRAN (R 4.5.0) - - zip 2.3.3 2025-05-13 diff --git a/articles/session.md b/articles/session.md index 19a8a902..ebc2a06e 100644 --- a/articles/session.md +++ b/articles/session.md @@ -45,8 +45,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | apexcharter | 0.4.5 | 2026-01-07 | CRAN (R 4.5.2) | | askpass | 1.2.1 | 2024-10-04 | CRAN (R 4.5.0) | | assertthat | 0.2.1 | 2019-03-21 | CRAN (R 4.5.0) | -| attachment | 0.4.5 | 2025-03-14 | CRAN (R 4.5.0) | -| attempt | 0.3.1 | 2020-05-03 | CRAN (R 4.5.0) | | backports | 1.5.0 | 2024-05-23 | CRAN (R 4.5.0) | | base64enc | 0.1-6 | 2026-02-02 | CRAN (R 4.5.2) | | bayestestR | 0.17.0 | 2025-08-29 | CRAN (R 4.5.0) | @@ -65,7 +63,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | cardx | 0.3.2 | 2026-02-05 | CRAN (R 4.5.2) | | caTools | 1.18.3 | 2024-09-04 | CRAN (R 4.5.0) | | cellranger | 1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | -| cffr | 1.2.1 | 2026-01-12 | CRAN (R 4.5.2) | | checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | | class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.2) | | classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | @@ -75,8 +72,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | | commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | | crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | -| credentials | 2.0.3 | 2025-09-12 | CRAN (R 4.5.0) | -| curl | 7.0.0 | 2025-08-19 | CRAN (R 4.5.0) | | data.table | 1.18.2.1 | 2026-01-27 | CRAN (R 4.5.2) | | datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.5.0) | | datawizard | 1.3.0 | 2025-10-11 | CRAN (R 4.5.0) | @@ -85,7 +80,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | devtools | 2.4.6 | 2025-10-03 | CRAN (R 4.5.0) | | DHARMa | 0.4.7 | 2024-10-18 | CRAN (R 4.5.0) | | digest | 0.6.39 | 2025-11-19 | CRAN (R 4.5.2) | -| dockerfiler | 0.2.5 | 2025-05-07 | CRAN (R 4.5.0) | | doParallel | 1.0.17 | 2022-02-07 | CRAN (R 4.5.0) | | dplyr | 1.2.0 | 2026-02-03 | CRAN (R 4.5.2) | | DT | 0.34.0 | 2025-09-02 | CRAN (R 4.5.0) | @@ -112,15 +106,12 @@ FreesearchR:::session_data$libs|> knitr::kable() | fs | 1.6.6 | 2025-04-12 | CRAN (R 4.5.0) | | gdtools | 0.5.0 | 2026-02-09 | CRAN (R 4.5.2) | | generics | 0.1.4 | 2025-05-09 | CRAN (R 4.5.0) | -| gert | 2.3.1 | 2026-01-11 | CRAN (R 4.5.2) | | ggalluvial | 0.12.5 | 2023-02-22 | CRAN (R 4.5.0) | | ggcorrplot | 0.1.4.1 | 2023-09-05 | CRAN (R 4.5.0) | | ggforce | 0.5.0 | 2025-06-18 | CRAN (R 4.5.0) | | ggplot2 | 4.0.2 | 2026-02-03 | CRAN (R 4.5.2) | | ggridges | 0.5.7 | 2025-08-27 | CRAN (R 4.5.0) | | ggstats | 0.12.0 | 2025-12-22 | CRAN (R 4.5.2) | -| gh | 1.5.0 | 2025-05-26 | CRAN (R 4.5.0) | -| gitcreds | 0.1.2 | 2022-09-08 | CRAN (R 4.5.0) | | glue | 1.8.0 | 2024-09-30 | CRAN (R 4.5.0) | | gridExtra | 2.3 | 2017-09-09 | CRAN (R 4.5.0) | | gt | 1.3.0 | 2026-01-22 | CRAN (R 4.5.2) | @@ -134,24 +125,20 @@ FreesearchR:::session_data$libs|> knitr::kable() | htmltools | 0.5.9 | 2025-12-04 | CRAN (R 4.5.2) | | htmlwidgets | 1.6.4 | 2023-12-06 | CRAN (R 4.5.0) | | httpuv | 1.6.16 | 2025-04-16 | CRAN (R 4.5.0) | -| httr2 | 1.2.2 | 2025-12-08 | CRAN (R 4.5.2) | | IDEAFilter | 0.2.1 | 2025-07-29 | CRAN (R 4.5.0) | | insight | 1.4.6 | 2026-02-04 | CRAN (R 4.5.2) | | iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.5.0) | | jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.5.0) | | jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | -| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.5.0) | | KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.2) | | keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | | knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | | later | 1.4.6 | 2026-02-13 | CRAN (R 4.5.2) | | lattice | 0.22-7 | 2025-04-02 | CRAN (R 4.5.2) | | lifecycle | 1.0.5 | 2026-01-08 | CRAN (R 4.5.2) | -| litedown | 0.9 | 2025-12-18 | CRAN (R 4.5.2) | | lme4 | 1.1-38 | 2025-12-02 | CRAN (R 4.5.2) | | lubridate | 1.9.5 | 2026-02-04 | CRAN (R 4.5.2) | | magrittr | 2.0.4 | 2025-09-12 | CRAN (R 4.5.0) | -| markdown | 2.0 | 2025-03-23 | CRAN (R 4.5.0) | | MASS | 7.3-65 | 2025-02-28 | CRAN (R 4.5.0) | | Matrix | 1.7-4 | 2025-08-28 | CRAN (R 4.5.2) | | memoise | 2.0.1 | 2021-11-26 | CRAN (R 4.5.0) | @@ -167,7 +154,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | openssl | 2.3.4 | 2025-09-30 | CRAN (R 4.5.0) | | openxlsx2 | 1.23.1 | 2026-01-19 | CRAN (R 4.5.2) | | otel | 0.2.0 | 2025-08-29 | CRAN (R 4.5.0) | -| pak | 0.9.2 | 2025-12-22 | CRAN (R 4.5.2) | | parameters | 0.28.3 | 2025-11-25 | CRAN (R 4.5.2) | | patchwork | 1.3.2 | 2025-08-25 | CRAN (R 4.5.0) | | pbmcapply | 1.5.1 | 2022-04-28 | CRAN (R 4.5.0) | @@ -191,7 +177,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | | ragg | 1.5.0 | 2025-09-02 | CRAN (R 4.5.0) | | rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | -| rappdirs | 0.3.4 | 2026-01-17 | CRAN (R 4.5.2) | | rbibutils | 2.4.1 | 2026-01-21 | CRAN (R 4.5.2) | | RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.5.0) | | Rcpp | 1.1.1 | 2026-01-10 | CRAN (R 4.5.2) | @@ -224,7 +209,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | sessioninfo | 1.2.3 | 2025-02-05 | CRAN (R 4.5.0) | | shiny | 1.13.0 | 2026-02-20 | CRAN (R 4.5.2) | | shiny.i18n | 0.3.0 | 2023-01-16 | CRAN (R 4.5.0) | -| shiny2docker | 0.0.3 | 2025-06-28 | CRAN (R 4.5.0) | | shinybusy | 0.3.3 | 2024-03-09 | CRAN (R 4.5.0) | | shinyjs | 2.1.1 | 2026-01-15 | CRAN (R 4.5.2) | | shinyTime | 1.0.3 | 2022-08-19 | CRAN (R 4.5.0) | @@ -233,7 +217,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | stringi | 1.8.7 | 2025-03-27 | CRAN (R 4.5.0) | | stringr | 1.6.0 | 2025-11-04 | CRAN (R 4.5.0) | | stRoke | 25.9.2 | 2025-09-30 | CRAN (R 4.5.0) | -| sys | 3.4.3 | 2024-10-04 | CRAN (R 4.5.0) | | systemfonts | 1.3.1 | 2025-10-01 | CRAN (R 4.5.0) | | testthat | 3.3.2 | 2026-01-11 | CRAN (R 4.5.2) | | textshaping | 1.0.4 | 2025-10-10 | CRAN (R 4.5.0) | @@ -248,7 +231,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | | usethis | 3.2.1 | 2025-09-06 | CRAN (R 4.5.0) | | uuid | 1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | -| V8 | 8.0.1 | 2025-10-10 | CRAN (R 4.5.0) | | vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | | viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | | viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | @@ -259,5 +241,4 @@ FreesearchR:::session_data$libs|> knitr::kable() | xml2 | 1.5.2 | 2026-01-17 | CRAN (R 4.5.2) | | xtable | 1.8-4 | 2019-04-21 | CRAN (R 4.5.0) | | yaml | 2.3.12 | 2025-12-10 | CRAN (R 4.5.2) | -| yesno | 0.1.3 | 2024-07-26 | CRAN (R 4.5.0) | | zip | 2.3.3 | 2025-05-13 | CRAN (R 4.5.0) | diff --git a/articles/visuals.html b/articles/visuals.html index c0e655a0..d26e99c9 100644 --- a/articles/visuals.html +++ b/articles/visuals.html @@ -73,7 +73,7 @@

On visuals

- Source: vignettes/visuals.Rmd + Source: vignettes/visuals.Rmd
visuals.Rmd
diff --git a/authors.html b/authors.html index 08400904..2d543cce 100644 --- a/authors.html +++ b/authors.html @@ -59,7 +59,7 @@

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Damsbo A (2026). FreesearchR: Easy data analysis for clinicians. diff --git a/authors.md b/authors.md index 60f5205b..e11ed7c5 100644 --- a/authors.md +++ b/authors.md @@ -12,7 +12,7 @@ ## Citation Source: -[`DESCRIPTION`](https://github.com/agdamsbo/FreesearchR/blob/v26.3.2/DESCRIPTION) +[`DESCRIPTION`](https://github.com/agdamsbo/FreesearchR/blob/main/DESCRIPTION) Damsbo A (2026). *FreesearchR: Easy data analysis for clinicians*. R package version 26.3.2, . diff --git a/news/index.html b/news/index.html index 55734d4d..e6d87104 100644 --- a/news/index.html +++ b/news/index.html @@ -38,7 +38,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
@@ -46,6 +46,7 @@

FIX Updating factor levels always created new factor.

FIX Label stripping behavior updating factors is fixed.

NEW New with_labels() function (and helpers) added to allow easy preservation of labels.

+

NEW option to pass global settings when running as docker or launching from R. Support for INCLUDE_GLOBALENV, DATA_LIMIT_DEFAULT, DATA_LIMIT_UPPER and DATA_LIMIT_LOWER. Docs will follow.

FreesearchR 26.3.1

diff --git a/news/index.md b/news/index.md index a2193fcd..40e48867 100644 --- a/news/index.md +++ b/news/index.md @@ -9,6 +9,10 @@ *NEW* New with_labels() function (and helpers) added to allow easy preservation of labels. +*NEW* option to pass global settings when running as docker or launching +from R. Support for INCLUDE_GLOBALENV, DATA_LIMIT_DEFAULT, +DATA_LIMIT_UPPER and DATA_LIMIT_LOWER. Docs will follow. + ## FreesearchR 26.3.1 *FIX* ~~Include font files for static loading without dependency on diff --git a/pkgdown.yml b/pkgdown.yml index 95ef6b08..ffaa929d 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -7,7 +7,7 @@ articles: missingness: missingness.html session: session.html visuals: visuals.html -last_built: 2026-03-11T09:53Z +last_built: 2026-03-11T12:41Z urls: reference: https://agdamsbo.github.io/FreesearchR/reference article: https://agdamsbo.github.io/FreesearchR/articles diff --git a/reference/FreesearchR_palette.html b/reference/FreesearchR_palette.html index a2b9e457..975d9607 100644 --- a/reference/FreesearchR_palette.html +++ b/reference/FreesearchR_palette.html @@ -38,7 +38,7 @@

Use the FreesearchR colors

- Source: R/theme.R + Source: R/theme.R
FreesearchR_palette.Rd
diff --git a/reference/FreesearchR_theme.html b/reference/FreesearchR_theme.html index 614a974d..6bb704b6 100644 --- a/reference/FreesearchR_theme.html +++ b/reference/FreesearchR_theme.html @@ -38,7 +38,7 @@

Custom theme based on unity

- Source: R/theme.R + Source: R/theme.R
FreesearchR_theme.Rd
diff --git a/reference/add_class_icon.html b/reference/add_class_icon.html index 1fe8775a..ff596caf 100644 --- a/reference/add_class_icon.html +++ b/reference/add_class_icon.html @@ -38,7 +38,7 @@

Convert class grid column to icon

- Source: R/data-summary.R + Source: R/data-summary.R
add_class_icon.Rd
diff --git a/reference/add_sparkline.html b/reference/add_sparkline.html index 3e6f4887..fc9bb52f 100644 --- a/reference/add_sparkline.html +++ b/reference/add_sparkline.html @@ -38,7 +38,7 @@

Add sparkline to datagrid

- Source: R/data-summary.R + Source: R/data-summary.R
add_sparkline.Rd
diff --git a/reference/align_axes.html b/reference/align_axes.html index 85250bb6..863ec43b 100644 --- a/reference/align_axes.html +++ b/reference/align_axes.html @@ -38,7 +38,7 @@

Aligns axes between plots

- Source: R/data_plots.R + Source: R/data_plots.R
align_axes.Rd
diff --git a/reference/all_but.html b/reference/all_but.html index a5501a3e..8265be54 100644 --- a/reference/all_but.html +++ b/reference/all_but.html @@ -38,7 +38,7 @@

Select all from vector but

- Source: R/data_plots.R + Source: R/data_plots.R
all_but.Rd
diff --git a/reference/append_column.html b/reference/append_column.html index 8f09e10b..bd336278 100644 --- a/reference/append_column.html +++ b/reference/append_column.html @@ -38,7 +38,7 @@

Append a column to a data.frame

- Source: R/helpers.R + Source: R/helpers.R
append_column.Rd
diff --git a/reference/append_list.html b/reference/append_list.html index 8dd9293c..fcfa04c1 100644 --- a/reference/append_list.html +++ b/reference/append_list.html @@ -38,7 +38,7 @@

Append list with named index

- Source: R/helpers.R + Source: R/helpers.R
append_list.Rd
diff --git a/reference/apply_labels.html b/reference/apply_labels.html index e11ab99c..12134f6f 100644 --- a/reference/apply_labels.html +++ b/reference/apply_labels.html @@ -38,7 +38,7 @@

Apply a named label vector to a data frame

- Source: R/utils-labels.R + Source: R/utils-labels.R
apply_labels.Rd
diff --git a/reference/argsstring2list.html b/reference/argsstring2list.html index 4430d999..b4ff68ff 100644 --- a/reference/argsstring2list.html +++ b/reference/argsstring2list.html @@ -38,7 +38,7 @@

Convert string of arguments to list of arguments

- Source: R/helpers.R + Source: R/helpers.R
argsstring2list.Rd
diff --git a/reference/baseline_table.html b/reference/baseline_table.html index 0ae3da5b..66f79a3f 100644 --- a/reference/baseline_table.html +++ b/reference/baseline_table.html @@ -38,7 +38,7 @@

Print a flexible baseline characteristics table

- Source: R/baseline_table.R + Source: R/baseline_table.R
baseline_table.Rd
diff --git a/reference/class_icons.html b/reference/class_icons.html index 93877322..c2ff46fa 100644 --- a/reference/class_icons.html +++ b/reference/class_icons.html @@ -38,7 +38,7 @@

Get data class icons

- Source: R/data-summary.R + Source: R/data-summary.R
class_icons.Rd
diff --git a/reference/clean_common_axis.html b/reference/clean_common_axis.html index 6515ff4b..5a0ce778 100644 --- a/reference/clean_common_axis.html +++ b/reference/clean_common_axis.html @@ -38,7 +38,7 @@

Extract and clean axis ranges

- Source: R/data_plots.R + Source: R/data_plots.R
clean_common_axis.Rd
diff --git a/reference/clean_date.html b/reference/clean_date.html index 1e1eefaf..13ea4ec6 100644 --- a/reference/clean_date.html +++ b/reference/clean_date.html @@ -38,7 +38,7 @@

Attempts at applying uniform date format

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
clean_date.Rd
diff --git a/reference/clean_sep.html b/reference/clean_sep.html index 24b6be18..d4046d92 100644 --- a/reference/clean_sep.html +++ b/reference/clean_sep.html @@ -38,7 +38,7 @@

gsub wrapper for piping with default values for separator substituting

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
clean_sep.Rd
diff --git a/reference/collapse_spaces.html b/reference/collapse_spaces.html index b7bf7429..48a3fe15 100644 --- a/reference/collapse_spaces.html +++ b/reference/collapse_spaces.html @@ -40,7 +40,7 @@ but it works">

Substitue spaces/tabs with single space excluding text within quotes

- Source: R/helpers.R + Source: R/helpers.R
collapse_spaces.Rd
diff --git a/reference/columnSelectInput.html b/reference/columnSelectInput.html index 38220576..5729c599 100644 --- a/reference/columnSelectInput.html +++ b/reference/columnSelectInput.html @@ -40,7 +40,7 @@ Adds the option to select "none" which is handled later'>

A selectizeInput customized for data frames with column labels

- Source: R/custom_SelectInput.R + Source: R/custom_SelectInput.R
columnSelectInput.Rd
diff --git a/reference/compare_missings.html b/reference/compare_missings.html index e7599548..5bdc0b99 100644 --- a/reference/compare_missings.html +++ b/reference/compare_missings.html @@ -38,7 +38,7 @@

Pairwise comparison of missings across covariables

- Source: R/missings-module.R + Source: R/missings-module.R
compare_missings.Rd
diff --git a/reference/contrast_text.html b/reference/contrast_text.html index 34011d05..34b275c1 100644 --- a/reference/contrast_text.html +++ b/reference/contrast_text.html @@ -40,7 +40,7 @@ background color.">

Contrast Text Color

- Source: R/contrast_text.R + Source: R/contrast_text.R
contrast_text.Rd
diff --git a/reference/corr_pairs_validate.html b/reference/corr_pairs_validate.html index 0a70e496..32eb4b0d 100644 --- a/reference/corr_pairs_validate.html +++ b/reference/corr_pairs_validate.html @@ -38,7 +38,7 @@

Correlation pairs validation

- Source: R/validation.R + Source: R/validation.R
corr_pairs_validate.Rd
diff --git a/reference/correlation_pairs.html b/reference/correlation_pairs.html index ce3bcdf8..c7a59a69 100644 --- a/reference/correlation_pairs.html +++ b/reference/correlation_pairs.html @@ -38,7 +38,7 @@

Determine significant correlations in the data set

- Source: R/correlations-module.R + Source: R/correlations-module.R
correlation_pairs.Rd
diff --git a/reference/create-column.html b/reference/create-column.html index c362831d..b393ee90 100644 --- a/reference/create-column.html +++ b/reference/create-column.html @@ -38,7 +38,7 @@

Create new column

- Source: R/create-column-mod.R + Source: R/create-column-mod.R
create-column.Rd
diff --git a/reference/create_baseline.html b/reference/create_baseline.html index ccbe28cf..b034c2d2 100644 --- a/reference/create_baseline.html +++ b/reference/create_baseline.html @@ -38,7 +38,7 @@

Create a baseline table

- Source: R/baseline_table.R + Source: R/baseline_table.R
create_baseline.Rd
diff --git a/reference/create_log_tics.html b/reference/create_log_tics.html index f0350dba..63ffb2f9 100644 --- a/reference/create_log_tics.html +++ b/reference/create_log_tics.html @@ -38,7 +38,7 @@

Create summetric log ticks

- Source: R/regression_plot.R + Source: R/regression_plot.R
create_log_tics.Rd
diff --git a/reference/create_overview_datagrid.html b/reference/create_overview_datagrid.html index f2fcd504..8792a5e5 100644 --- a/reference/create_overview_datagrid.html +++ b/reference/create_overview_datagrid.html @@ -38,7 +38,7 @@

Create a data overview datagrid

- Source: R/data-summary.R + Source: R/data-summary.R
create_overview_datagrid.Rd
diff --git a/reference/cut-variable.html b/reference/cut-variable.html index a8e6eec1..270bc183 100644 --- a/reference/cut-variable.html +++ b/reference/cut-variable.html @@ -38,7 +38,7 @@

Module to Convert Numeric to Factor

- Source: R/cut-variable-ext.R + Source: R/cut-variable-ext.R
cut-variable.Rd
diff --git a/reference/cut_methods.html b/reference/cut_methods.html index 728151eb..98f0061f 100644 --- a/reference/cut_methods.html +++ b/reference/cut_methods.html @@ -38,7 +38,7 @@

Library of cut methods with descriptions

- Source: R/cut-variable-ext.R + Source: R/cut-variable-ext.R
cut_methods.Rd
diff --git a/reference/cut_var.html b/reference/cut_var.html index 04f5455a..41fa507f 100644 --- a/reference/cut_var.html +++ b/reference/cut_var.html @@ -42,7 +42,7 @@ Subset first part of string to factor">

Extended cutting function with fall-back to the native base::cut

- Source: R/cut_var.R + Source: R/cut_var.R
cut_var.Rd
diff --git a/reference/data-correlations.html b/reference/data-correlations.html index c98505ca..f53569c0 100644 --- a/reference/data-correlations.html +++ b/reference/data-correlations.html @@ -38,7 +38,7 @@

Data correlations evaluation module

- Source: R/correlations-module.R + Source: R/correlations-module.R
data-correlations.Rd
diff --git a/reference/data-missings.html b/reference/data-missings.html index 7a85005c..15f00dfe 100644 --- a/reference/data-missings.html +++ b/reference/data-missings.html @@ -38,7 +38,7 @@

Data correlations evaluation module

- Source: R/missings-module.R + Source: R/missings-module.R
data-missings.Rd
diff --git a/reference/data-plots.html b/reference/data-plots.html index ab9e60f1..92fe7d9b 100644 --- a/reference/data-plots.html +++ b/reference/data-plots.html @@ -58,7 +58,7 @@ Beatiful violin plot">

Data correlations evaluation module

- Source: R/data_plots.R, R/plot_bar.R, R/plot_box.R, and 5 more + Source: R/data_plots.R, R/plot_bar.R, R/plot_box.R, and 5 more
data-plots.Rd
@@ -732,7 +732,7 @@ One of c("stack", "dodge", "fill")

#> list() #> #> $plot_env -#> <environment: 0x560695612888> +#> <environment: 0x562f6d8dfe30> #> #> $code #> FreesearchR::plot_violin(pri = "mpg", sec = "cyl", ter = NULL) diff --git a/reference/data-plots.md b/reference/data-plots.md index 43ead2fc..620a1fc4 100644 --- a/reference/data-plots.md +++ b/reference/data-plots.md @@ -688,7 +688,7 @@ create_plot(mtcars, "plot_violin", "mpg", "cyl") |> attributes() #> list() #> #> $plot_env -#> +#> #> #> $code #> FreesearchR::plot_violin(pri = "mpg", sec = "cyl", ter = NULL) diff --git a/reference/data-summary.html b/reference/data-summary.html index 6e2f3010..ffa4fc5d 100644 --- a/reference/data-summary.html +++ b/reference/data-summary.html @@ -38,7 +38,7 @@

Data summary module

- Source: R/data-summary.R + Source: R/data-summary.R
data-summary.Rd
diff --git a/reference/data_description.html b/reference/data_description.html index 2d18d6dc..524be545 100644 --- a/reference/data_description.html +++ b/reference/data_description.html @@ -38,7 +38,7 @@

Ultra short data dascription

- Source: R/helpers.R + Source: R/helpers.R
data_description.Rd
diff --git a/reference/data_summary_gather.html b/reference/data_summary_gather.html index 65b213be..983d2918 100644 --- a/reference/data_summary_gather.html +++ b/reference/data_summary_gather.html @@ -38,7 +38,7 @@

Data summary for printing visual summary

- Source: R/visual_summary.R + Source: R/visual_summary.R
data_summary_gather.Rd
diff --git a/reference/data_type.html b/reference/data_type.html index 6993cd66..e99a3ae0 100644 --- a/reference/data_type.html +++ b/reference/data_type.html @@ -40,7 +40,7 @@ meaningful "clinical" data type.'>

Data type assessment.

- Source: R/helpers.R + Source: R/helpers.R
data_type.Rd
diff --git a/reference/data_type_filter.html b/reference/data_type_filter.html index 59872cf7..38e138b7 100644 --- a/reference/data_type_filter.html +++ b/reference/data_type_filter.html @@ -38,7 +38,7 @@

Filter function to filter data set by variable type

- Source: R/helpers.R + Source: R/helpers.R
data_type_filter.Rd
diff --git a/reference/data_types.html b/reference/data_types.html index 3907ff2c..a9fd538d 100644 --- a/reference/data_types.html +++ b/reference/data_types.html @@ -38,7 +38,7 @@

Recognised data types from data_type

- Source: R/helpers.R + Source: R/helpers.R
data_types.Rd
diff --git a/reference/default_format_arguments.html b/reference/default_format_arguments.html index 69f4724f..b1fce580 100644 --- a/reference/default_format_arguments.html +++ b/reference/default_format_arguments.html @@ -38,7 +38,7 @@

Defaults qmd formats

- Source: R/report.R + Source: R/report.R
default_format_arguments.Rd
diff --git a/reference/default_parsing.html b/reference/default_parsing.html index 956083af..e3b32d82 100644 --- a/reference/default_parsing.html +++ b/reference/default_parsing.html @@ -38,7 +38,7 @@

Default data parsing

- Source: R/helpers.R + Source: R/helpers.R
default_parsing.Rd
diff --git a/reference/detect_delimiter.html b/reference/detect_delimiter.html index 44708e82..e77eacd9 100644 --- a/reference/detect_delimiter.html +++ b/reference/detect_delimiter.html @@ -38,7 +38,7 @@

Detect delimiters in string based on allowed delimiters

- Source: R/separate_string.R + Source: R/separate_string.R
detect_delimiter.Rd
diff --git a/reference/dim_change_call.html b/reference/dim_change_call.html index 105584a5..a5b4c61b 100644 --- a/reference/dim_change_call.html +++ b/reference/dim_change_call.html @@ -38,7 +38,7 @@

Dimensions validation

- Source: R/validation.R + Source: R/validation.R
dim_change_call.Rd
diff --git a/reference/drop_empty_event.html b/reference/drop_empty_event.html index 4323dbb4..529d7e77 100644 --- a/reference/drop_empty_event.html +++ b/reference/drop_empty_event.html @@ -38,7 +38,7 @@

Drop empty events from REDCap export

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
drop_empty_event.Rd
diff --git a/reference/expression_string.html b/reference/expression_string.html index 472177c6..fb0177b0 100644 --- a/reference/expression_string.html +++ b/reference/expression_string.html @@ -38,7 +38,7 @@

Deparses expression as string, substitutes native pipe and adds assign

- Source: R/helpers.R + Source: R/helpers.R
expression_string.Rd
diff --git a/reference/extract_labels.html b/reference/extract_labels.html index b14c02d1..0ba77371 100644 --- a/reference/extract_labels.html +++ b/reference/extract_labels.html @@ -38,7 +38,7 @@

Extract column labels from a data frame

- Source: R/utils-labels.R + Source: R/utils-labels.R
extract_labels.Rd
diff --git a/reference/factor_new_levels_labels.html b/reference/factor_new_levels_labels.html index d3a67c23..c2c85a73 100644 --- a/reference/factor_new_levels_labels.html +++ b/reference/factor_new_levels_labels.html @@ -38,7 +38,7 @@

Simple function to apply new levels and/or labels to factor

- Source: R/update-factor-ext.R + Source: R/update-factor-ext.R
factor_new_levels_labels.Rd
diff --git a/reference/factorize.html b/reference/factorize.html index f65d00dc..8e7397fa 100644 --- a/reference/factorize.html +++ b/reference/factorize.html @@ -38,7 +38,7 @@

Factorize variables in data.frame

- Source: R/helpers.R + Source: R/helpers.R
factorize.Rd
diff --git a/reference/file_export.html b/reference/file_export.html index 92314aca..9e9d64f2 100644 --- a/reference/file_export.html +++ b/reference/file_export.html @@ -38,7 +38,7 @@

Title

- Source: R/helpers.R + Source: R/helpers.R
file_export.Rd
diff --git a/reference/format_writer.html b/reference/format_writer.html index 9d5e8db0..cf5a2926 100644 --- a/reference/format_writer.html +++ b/reference/format_writer.html @@ -38,7 +38,7 @@

Merges list of named arguments for qmd header generation

- Source: R/report.R + Source: R/report.R
format_writer.Rd
diff --git a/reference/get_data_packages.html b/reference/get_data_packages.html index ef3faae9..b4ae23cf 100644 --- a/reference/get_data_packages.html +++ b/reference/get_data_packages.html @@ -38,7 +38,7 @@

Get packages containing datasets

- Source: R/import_globalenv-ext.R + Source: R/import_globalenv-ext.R
get_data_packages.Rd
diff --git a/reference/get_dimensions.html b/reference/get_dimensions.html index 1ba32e24..07044ea4 100644 --- a/reference/get_dimensions.html +++ b/reference/get_dimensions.html @@ -38,7 +38,7 @@

Extension of the helper function from datamods

- Source: R/import_globalenv-ext.R + Source: R/import_globalenv-ext.R
get_dimensions.Rd
diff --git a/reference/get_fun_options.html b/reference/get_fun_options.html index 11487d02..63e92763 100644 --- a/reference/get_fun_options.html +++ b/reference/get_fun_options.html @@ -38,7 +38,7 @@

Get the function options based on the selected function description

- Source: R/regression_model.R + Source: R/regression_model.R
get_fun_options.Rd
diff --git a/reference/get_label.html b/reference/get_label.html index 66173c59..3b1659ae 100644 --- a/reference/get_label.html +++ b/reference/get_label.html @@ -38,7 +38,7 @@

Print label, and if missing print variable name for plots

- Source: R/data_plots.R + Source: R/data_plots.R
get_label.Rd
diff --git a/reference/get_list_elements.html b/reference/get_list_elements.html index 90fb943e..22c70528 100644 --- a/reference/get_list_elements.html +++ b/reference/get_list_elements.html @@ -38,7 +38,7 @@

Subset elements from list of lists

- Source: R/cut-variable-ext.R + Source: R/cut-variable-ext.R
get_list_elements.Rd
diff --git a/reference/get_plot_options.html b/reference/get_plot_options.html index 257ee8d0..35492efd 100644 --- a/reference/get_plot_options.html +++ b/reference/get_plot_options.html @@ -38,7 +38,7 @@

Get the function options based on the selected function description

- Source: R/data_plots.R + Source: R/data_plots.R
get_plot_options.Rd
diff --git a/reference/get_var_icon.html b/reference/get_var_icon.html index 0a38acf9..70178730 100644 --- a/reference/get_var_icon.html +++ b/reference/get_var_icon.html @@ -38,7 +38,7 @@

Easily get variable icon based on data type or class

- Source: R/data-summary.R + Source: R/data-summary.R
get_var_icon.Rd
diff --git a/reference/getfun.html b/reference/getfun.html index e15d37e6..2521ebc3 100644 --- a/reference/getfun.html +++ b/reference/getfun.html @@ -38,7 +38,7 @@

Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'

- Source: R/helpers.R + Source: R/helpers.R
getfun.Rd
@@ -139,7 +139,7 @@ #> z$qr <- NULL #> z #> } -#> <bytecode: 0x560694811028> +#> <bytecode: 0x562f70dea848> #> <environment: namespace:stats>
diff --git a/reference/getfun.md b/reference/getfun.md index 41537a2b..20a6c7a7 100644 --- a/reference/getfun.md +++ b/reference/getfun.md @@ -95,6 +95,6 @@ getfun("stats::lm") #> z$qr <- NULL #> z #> } -#> +#> #> ``` diff --git a/reference/gg_theme_export.html b/reference/gg_theme_export.html index a133064a..1bb837f5 100644 --- a/reference/gg_theme_export.html +++ b/reference/gg_theme_export.html @@ -38,7 +38,7 @@

GGplot default theme for plotting export objects

- Source: R/theme.R + Source: R/theme.R
gg_theme_export.Rd
diff --git a/reference/gg_theme_shiny.html b/reference/gg_theme_shiny.html index b51d4668..d0242b15 100644 --- a/reference/gg_theme_shiny.html +++ b/reference/gg_theme_shiny.html @@ -38,7 +38,7 @@

GGplot default theme for plotting in Shiny

- Source: R/theme.R + Source: R/theme.R
gg_theme_shiny.Rd
diff --git a/reference/ggeulerr.html b/reference/ggeulerr.html index 697457dd..a7b47b0c 100644 --- a/reference/ggeulerr.html +++ b/reference/ggeulerr.html @@ -42,7 +42,7 @@ but plots it using ggplot2">

Area proportional venn diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
ggeulerr.Rd
diff --git a/reference/grepl_fix.html b/reference/grepl_fix.html index 36ae91f7..25c946e7 100644 --- a/reference/grepl_fix.html +++ b/reference/grepl_fix.html @@ -38,7 +38,7 @@

Matches pattern to vector based on match type

- Source: R/wide2long.R + Source: R/wide2long.R
grepl_fix.Rd
diff --git a/reference/if_not_missing.html b/reference/if_not_missing.html index 80197a38..fbcc234f 100644 --- a/reference/if_not_missing.html +++ b/reference/if_not_missing.html @@ -38,7 +38,7 @@

Return if available

- Source: R/helpers.R + Source: R/helpers.R
if_not_missing.Rd
diff --git a/reference/import-file-type.html b/reference/import-file-type.html index 51902ae8..5d43def7 100644 --- a/reference/import-file-type.html +++ b/reference/import-file-type.html @@ -38,7 +38,7 @@

Wrapper to ease data file import

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file-type.Rd
diff --git a/reference/import-file.html b/reference/import-file.html index 6918a9c5..4d8cdc7b 100644 --- a/reference/import-file.html +++ b/reference/import-file.html @@ -38,7 +38,7 @@

Import data from a file

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file.Rd
diff --git a/reference/import-file_module.html b/reference/import-file_module.html index 41b57e9c..027a06fa 100644 --- a/reference/import-file_module.html +++ b/reference/import-file_module.html @@ -38,7 +38,7 @@

Test app for the import_file module

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file_module.Rd
diff --git a/reference/import-globalenv.html b/reference/import-globalenv.html index d43ae180..4ecf0613 100644 --- a/reference/import-globalenv.html +++ b/reference/import-globalenv.html @@ -40,7 +40,7 @@ Modified from datamods">

Import data from an Environment

- Source: R/import_globalenv-ext.R + Source: R/import_globalenv-ext.R
import-globalenv.Rd
diff --git a/reference/index_embed.html b/reference/index_embed.html index 5ca9fc1b..5a2e56c3 100644 --- a/reference/index_embed.html +++ b/reference/index_embed.html @@ -38,7 +38,7 @@

Split vector by an index and embed addition

- Source: R/report.R + Source: R/report.R
index_embed.Rd
diff --git a/reference/is_any_class.html b/reference/is_any_class.html index b2d1ea57..cccad8c2 100644 --- a/reference/is_any_class.html +++ b/reference/is_any_class.html @@ -38,7 +38,7 @@

Test class

- Source: R/cut_var.R + Source: R/cut_var.R
is_any_class.Rd
diff --git a/reference/is_consecutive.html b/reference/is_consecutive.html index 2cd2f2ec..794d72d0 100644 --- a/reference/is_consecutive.html +++ b/reference/is_consecutive.html @@ -38,7 +38,7 @@

Checks if elements in vector are equally spaced as indication of ID

- Source: R/data-summary.R + Source: R/data-summary.R
is_consecutive.Rd
diff --git a/reference/is_datetime.html b/reference/is_datetime.html index 514c012a..564f8acc 100644 --- a/reference/is_datetime.html +++ b/reference/is_datetime.html @@ -38,7 +38,7 @@

Test is date/datetime/time

- Source: R/cut_var.R + Source: R/cut_var.R
is_datetime.Rd
diff --git a/reference/is_identical_to_previous.html b/reference/is_identical_to_previous.html index 897940eb..3e484530 100644 --- a/reference/is_identical_to_previous.html +++ b/reference/is_identical_to_previous.html @@ -38,7 +38,7 @@

Test if element is identical to the previous

- Source: R/helpers.R + Source: R/helpers.R
is_identical_to_previous.Rd
diff --git a/reference/is_splittable.html b/reference/is_splittable.html index 530f559b..5c57a2f3 100644 --- a/reference/is_splittable.html +++ b/reference/is_splittable.html @@ -38,7 +38,7 @@

Determine if any variable in data frame character and contains recognized delimiters

- Source: R/separate_string.R + Source: R/separate_string.R
is_splittable.Rd
diff --git a/reference/is_valid_redcap_url.html b/reference/is_valid_redcap_url.html index baf96709..c852747e 100644 --- a/reference/is_valid_redcap_url.html +++ b/reference/is_valid_redcap_url.html @@ -38,7 +38,7 @@

Test if url is valid format for REDCap API

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
is_valid_redcap_url.Rd
diff --git a/reference/is_valid_token.html b/reference/is_valid_token.html index 7a23f5ed..78ed3325 100644 --- a/reference/is_valid_token.html +++ b/reference/is_valid_token.html @@ -38,7 +38,7 @@

Validate REDCap token

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
is_valid_token.Rd
diff --git a/reference/label_report.html b/reference/label_report.html index 9f696e8d..cf95f72a 100644 --- a/reference/label_report.html +++ b/reference/label_report.html @@ -38,7 +38,7 @@

Print a tidy summary of column labels

- Source: R/utils-labels.R + Source: R/utils-labels.R
label_report.Rd
diff --git a/reference/landing_page_ui.html b/reference/landing_page_ui.html index 698e567d..b04ec918 100644 --- a/reference/landing_page_ui.html +++ b/reference/landing_page_ui.html @@ -38,7 +38,7 @@

Tag list of elements for the FreesearchR landing page

- Source: R/landing_page_ui.R + Source: R/landing_page_ui.R
landing_page_ui.Rd
diff --git a/reference/launch_FreesearchR.html b/reference/launch_FreesearchR.html index fb7bfca3..d302e5db 100644 --- a/reference/launch_FreesearchR.html +++ b/reference/launch_FreesearchR.html @@ -38,7 +38,7 @@

Easily launch the FreesearchR app

- Source: R/launch_FreesearchR.R + Source: R/launch_FreesearchR.R
launch_FreesearchR.Rd
diff --git a/reference/limit_data_size.html b/reference/limit_data_size.html index 19fd2dce..61890481 100644 --- a/reference/limit_data_size.html +++ b/reference/limit_data_size.html @@ -44,7 +44,7 @@ If limit is set to 0 or NULL, the original data set is returned.">

Limit the allowed data set size by number of cells

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
limit_data_size.Rd
diff --git a/reference/limit_log.html b/reference/limit_log.html index ddda3a58..7a6872cf 100644 --- a/reference/limit_log.html +++ b/reference/limit_log.html @@ -38,7 +38,7 @@

Easily round log scale limits for nice plots

- Source: R/regression_plot.R + Source: R/regression_plot.R
limit_log.Rd
diff --git a/reference/line_break.html b/reference/line_break.html index 7ea5fcff..3f636a50 100644 --- a/reference/line_break.html +++ b/reference/line_break.html @@ -38,7 +38,7 @@

Line breaking at given number of characters for nicely plotting labels

- Source: R/data_plots.R + Source: R/data_plots.R
line_break.Rd
diff --git a/reference/list_pkg_data.html b/reference/list_pkg_data.html index 3b9aff0d..6afc2246 100644 --- a/reference/list_pkg_data.html +++ b/reference/list_pkg_data.html @@ -38,7 +38,7 @@

List dataset contained in a package

- Source: R/import_globalenv-ext.R + Source: R/import_globalenv-ext.R
list_pkg_data.Rd
diff --git a/reference/make_validation.html b/reference/make_validation.html index 606332b4..641b9f48 100644 --- a/reference/make_validation.html +++ b/reference/make_validation.html @@ -38,7 +38,7 @@

Create validation data.frame

- Source: R/validation.R + Source: R/validation.R
make_validation.Rd
diff --git a/reference/make_validation_alerts.html b/reference/make_validation_alerts.html index 307dce49..89b3716b 100644 --- a/reference/make_validation_alerts.html +++ b/reference/make_validation_alerts.html @@ -38,7 +38,7 @@

Create alert from validation data.frame

- Source: R/validation.R + Source: R/validation.R
make_validation_alerts.Rd
diff --git a/reference/mcar_validate.html b/reference/mcar_validate.html index ff72b08b..74926e9f 100644 --- a/reference/mcar_validate.html +++ b/reference/mcar_validate.html @@ -38,7 +38,7 @@

MCAR validation based on a gtsummary table bady

- Source: R/validation.R + Source: R/validation.R
mcar_validate.Rd
diff --git a/reference/merge_expression.html b/reference/merge_expression.html index 6d294279..87e4e5ec 100644 --- a/reference/merge_expression.html +++ b/reference/merge_expression.html @@ -38,7 +38,7 @@

Merge list of expressions

- Source: R/helpers.R + Source: R/helpers.R
merge_expression.Rd
diff --git a/reference/merge_long.html b/reference/merge_long.html index 1b7ebc30..b547be8e 100644 --- a/reference/merge_long.html +++ b/reference/merge_long.html @@ -38,7 +38,7 @@

Wrapper to pivot gtsummary table data to long for plotting

- Source: R/regression_plot.R + Source: R/regression_plot.R
merge_long.Rd
diff --git a/reference/missing_fraction.html b/reference/missing_fraction.html index f43726fe..3c2316b2 100644 --- a/reference/missing_fraction.html +++ b/reference/missing_fraction.html @@ -38,7 +38,7 @@

Get missingsness fraction

- Source: R/helpers.R + Source: R/helpers.R
missing_fraction.Rd
diff --git a/reference/missings_logic_across.html b/reference/missings_logic_across.html index 04be4b0d..afae6f7e 100644 --- a/reference/missings_logic_across.html +++ b/reference/missings_logic_across.html @@ -38,7 +38,7 @@

Converting all variables to logicals by missing status

- Source: R/missings-module.R + Source: R/missings-module.R
missings_logic_across.Rd
diff --git a/reference/missings_validate.html b/reference/missings_validate.html index 9a3ac34c..17df7ef3 100644 --- a/reference/missings_validate.html +++ b/reference/missings_validate.html @@ -38,7 +38,7 @@

Validate function of missingness in data

- Source: R/validation.R + Source: R/validation.R
missings_validate.Rd
diff --git a/reference/modify_qmd.html b/reference/modify_qmd.html index a30fb329..c04aa902 100644 --- a/reference/modify_qmd.html +++ b/reference/modify_qmd.html @@ -38,7 +38,7 @@

Wrapper to modify quarto file to render specific formats

- Source: R/report.R + Source: R/report.R
modify_qmd.Rd
diff --git a/reference/names2val.html b/reference/names2val.html index 833a1911..489aa3ea 100644 --- a/reference/names2val.html +++ b/reference/names2val.html @@ -38,7 +38,7 @@

Set values as names and names as values

- Source: R/cut-variable-ext.R + Source: R/cut-variable-ext.R
names2val.Rd
diff --git a/reference/obs_filter_validate.html b/reference/obs_filter_validate.html index 086cd180..69ce324f 100644 --- a/reference/obs_filter_validate.html +++ b/reference/obs_filter_validate.html @@ -38,7 +38,7 @@

Observations filter test wrapper

- Source: R/validation.R + Source: R/validation.R
obs_filter_validate.Rd
diff --git a/reference/overview_vars.html b/reference/overview_vars.html index 0631e45e..5e0653cd 100644 --- a/reference/overview_vars.html +++ b/reference/overview_vars.html @@ -38,7 +38,7 @@

Create a data overview data.frame ready for sparklines

- Source: R/data-summary.R + Source: R/data-summary.R
overview_vars.Rd
diff --git a/reference/pipe_string.html b/reference/pipe_string.html index 2e5d5420..9ff245b9 100644 --- a/reference/pipe_string.html +++ b/reference/pipe_string.html @@ -38,7 +38,7 @@

Reduce character vector with the native pipe operator or character string

- Source: R/helpers.R + Source: R/helpers.R
pipe_string.Rd
diff --git a/reference/plot.tbl_regression.html b/reference/plot.tbl_regression.html index 3b66eb15..95293afb 100644 --- a/reference/plot.tbl_regression.html +++ b/reference/plot.tbl_regression.html @@ -38,7 +38,7 @@

Regression coef plot from gtsummary. Slightly modified to pass on arguments

- Source: R/regression_plot.R + Source: R/regression_plot.R
plot.tbl_regression.Rd
diff --git a/reference/plot_euler.html b/reference/plot_euler.html index 8eb1bbb4..6bbb9672 100644 --- a/reference/plot_euler.html +++ b/reference/plot_euler.html @@ -38,7 +38,7 @@

Easily plot euler diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
plot_euler.Rd
diff --git a/reference/plot_euler_single.html b/reference/plot_euler_single.html index 92cd76ed..55d26090 100644 --- a/reference/plot_euler_single.html +++ b/reference/plot_euler_single.html @@ -38,7 +38,7 @@

Easily plot single euler diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
plot_euler_single.Rd
diff --git a/reference/plot_sankey_single.html b/reference/plot_sankey_single.html index ab22d1d7..aa1064d3 100644 --- a/reference/plot_sankey_single.html +++ b/reference/plot_sankey_single.html @@ -38,7 +38,7 @@

Beautiful sankey plot

- Source: R/plot_sankey.R + Source: R/plot_sankey.R
plot_sankey_single.Rd
diff --git a/reference/possible_functions.html b/reference/possible_functions.html index f7e373e7..51e7dd9e 100644 --- a/reference/possible_functions.html +++ b/reference/possible_functions.html @@ -38,7 +38,7 @@

Get possible regression models

- Source: R/regression_model.R + Source: R/regression_model.R
possible_functions.Rd
diff --git a/reference/possible_plots.html b/reference/possible_plots.html index 893308d2..958ce879 100644 --- a/reference/possible_plots.html +++ b/reference/possible_plots.html @@ -38,7 +38,7 @@

Get possible regression models

- Source: R/data_plots.R + Source: R/data_plots.R
possible_plots.Rd
diff --git a/reference/read_input.html b/reference/read_input.html index 3b600eee..125a3167 100644 --- a/reference/read_input.html +++ b/reference/read_input.html @@ -38,7 +38,7 @@

Flexible file import based on extension

- Source: R/helpers.R + Source: R/helpers.R
read_input.Rd
diff --git a/reference/redcap_read_shiny_module.html b/reference/redcap_read_shiny_module.html index ece8e9ae..2ec648de 100644 --- a/reference/redcap_read_shiny_module.html +++ b/reference/redcap_read_shiny_module.html @@ -40,7 +40,7 @@ Test app for the redcap_read_shiny_module">

Shiny module to browser and export REDCap data

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
redcap_read_shiny_module.Rd
diff --git a/reference/regression_model.html b/reference/regression_model.html index a9348959..ee40b993 100644 --- a/reference/regression_model.html +++ b/reference/regression_model.html @@ -38,7 +38,7 @@

Create a regression model programatically

- Source: R/regression_model.R + Source: R/regression_model.R
regression_model.Rd
diff --git a/reference/regression_table.html b/reference/regression_table.html index 84a8db29..8d604f6a 100644 --- a/reference/regression_table.html +++ b/reference/regression_table.html @@ -38,7 +38,7 @@

Create table of regression model

- Source: R/regression_table.R + Source: R/regression_table.R
regression_table.Rd
diff --git a/reference/regression_table_create.html b/reference/regression_table_create.html index de20c629..e7c96aab 100644 --- a/reference/regression_table_create.html +++ b/reference/regression_table_create.html @@ -38,7 +38,7 @@

Create regression summary table

- Source: R/regression_table.R + Source: R/regression_table.R
regression_table_create.Rd
diff --git a/reference/remove_empty_attr.html b/reference/remove_empty_attr.html index c41c5554..9c331ce6 100644 --- a/reference/remove_empty_attr.html +++ b/reference/remove_empty_attr.html @@ -38,7 +38,7 @@

Remove empty/NA attributes

- Source: R/helpers.R + Source: R/helpers.R
remove_empty_attr.Rd
diff --git a/reference/remove_empty_cols.html b/reference/remove_empty_cols.html index 5d76ad3d..7447912d 100644 --- a/reference/remove_empty_cols.html +++ b/reference/remove_empty_cols.html @@ -38,7 +38,7 @@

Removes columns with completenes below cutoff

- Source: R/helpers.R + Source: R/helpers.R
remove_empty_cols.Rd
diff --git a/reference/remove_nested_list.html b/reference/remove_nested_list.html index 52c2b7f1..c9f05d0c 100644 --- a/reference/remove_nested_list.html +++ b/reference/remove_nested_list.html @@ -38,7 +38,7 @@

Very simple function to remove nested lists, like when uploading .rds

- Source: R/helpers.R + Source: R/helpers.R
remove_nested_list.Rd
diff --git a/reference/repeated_instruments.html b/reference/repeated_instruments.html index d1ffe332..5298581c 100644 --- a/reference/repeated_instruments.html +++ b/reference/repeated_instruments.html @@ -38,7 +38,7 @@

Get names of repeated instruments

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
repeated_instruments.Rd
diff --git a/reference/restore_labels.html b/reference/restore_labels.html index f6a3dd67..56e7bd67 100644 --- a/reference/restore_labels.html +++ b/reference/restore_labels.html @@ -40,7 +40,7 @@ matched by column name; new columns in df_modified are left unchanged.">

Restore column labels using a reference data frame

- Source: R/utils-labels.R + Source: R/utils-labels.R
restore_labels.Rd
diff --git a/reference/selectInputIcon.html b/reference/selectInputIcon.html index d93ecdc4..3b4c4227 100644 --- a/reference/selectInputIcon.html +++ b/reference/selectInputIcon.html @@ -40,7 +40,7 @@ after, or on both sides of a classic selectInput.">

Create a select input control with icon(s)

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
selectInputIcon.Rd
diff --git a/reference/separate_string.html b/reference/separate_string.html index 8d8fdf06..603d9b2a 100644 --- a/reference/separate_string.html +++ b/reference/separate_string.html @@ -38,7 +38,7 @@

Separate string wide or long

- Source: R/separate_string.R + Source: R/separate_string.R
separate_string.Rd
diff --git a/reference/set_column_label.html b/reference/set_column_label.html index ceca4f32..37f34d3f 100644 --- a/reference/set_column_label.html +++ b/reference/set_column_label.html @@ -38,7 +38,7 @@

(Re)label columns in data.frame

- Source: R/helpers.R + Source: R/helpers.R
set_column_label.Rd
diff --git a/reference/show_data.html b/reference/show_data.html index c2cce07c..314e7a6b 100644 --- a/reference/show_data.html +++ b/reference/show_data.html @@ -38,7 +38,7 @@

Display a table in a window

- Source: R/datagrid-infos-mod.R + Source: R/datagrid-infos-mod.R
show_data.Rd
diff --git a/reference/simple_snake.html b/reference/simple_snake.html index e12cf175..33d92566 100644 --- a/reference/simple_snake.html +++ b/reference/simple_snake.html @@ -38,7 +38,7 @@

Simplified version of the snakecase packages to_snake_case

- Source: R/helpers.R + Source: R/helpers.R
simple_snake.Rd
diff --git a/reference/sort_by.html b/reference/sort_by.html index 5238cf49..d1ee254b 100644 --- a/reference/sort_by.html +++ b/reference/sort_by.html @@ -38,7 +38,7 @@

Drop-in replacement for the base::sort_by with option to remove NAs

- Source: R/helpers.R + Source: R/helpers.R
sort_by.Rd
diff --git a/reference/specify_qmd_format.html b/reference/specify_qmd_format.html index e545eff3..5b0d8693 100644 --- a/reference/specify_qmd_format.html +++ b/reference/specify_qmd_format.html @@ -38,7 +38,7 @@

Specify format arguments to include in qmd header/frontmatter

- Source: R/report.R + Source: R/report.R
specify_qmd_format.Rd
diff --git a/reference/split-string.html b/reference/split-string.html index fb719437..c32d341f 100644 --- a/reference/split-string.html +++ b/reference/split-string.html @@ -38,7 +38,7 @@

String split module based on tidyr::separate_

- Source: R/separate_string.R + Source: R/separate_string.R
split-string.Rd
diff --git a/reference/subset_types.html b/reference/subset_types.html index bbe0e353..d533cfa9 100644 --- a/reference/subset_types.html +++ b/reference/subset_types.html @@ -38,7 +38,7 @@

Easily subset by data type function

- Source: R/data_plots.R + Source: R/data_plots.R
subset_types.Rd
diff --git a/reference/supported_functions.html b/reference/supported_functions.html index 5645b3a9..2a7d34c8 100644 --- a/reference/supported_functions.html +++ b/reference/supported_functions.html @@ -40,7 +40,7 @@ unique for each element on list.'>

Implemented functions

- Source: R/regression_model.R + Source: R/regression_model.R
supported_functions.Rd
diff --git a/reference/supported_plots.html b/reference/supported_plots.html index e674dedf..57fd9d39 100644 --- a/reference/supported_plots.html +++ b/reference/supported_plots.html @@ -54,7 +54,7 @@ tertiary.type: Tertiary variable data type (continuous, dichotomous or ordinal)

Implemented functions

- Source: R/data_plots.R + Source: R/data_plots.R
supported_plots.Rd
diff --git a/reference/symmetrical_scale_x_log10.html b/reference/symmetrical_scale_x_log10.html index 87fd4647..80840642 100644 --- a/reference/symmetrical_scale_x_log10.html +++ b/reference/symmetrical_scale_x_log10.html @@ -38,7 +38,7 @@

Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots

- Source: R/regression_plot.R + Source: R/regression_plot.R
symmetrical_scale_x_log10.Rd
diff --git a/reference/tbl_merge.html b/reference/tbl_merge.html index 50c20437..09faf2d8 100644 --- a/reference/tbl_merge.html +++ b/reference/tbl_merge.html @@ -40,7 +40,7 @@ spanner names.">

A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.

- Source: R/regression_table.R + Source: R/regression_table.R
tbl_merge.Rd
diff --git a/reference/type_icons.html b/reference/type_icons.html index b3ed64ff..27a0d590 100644 --- a/reference/type_icons.html +++ b/reference/type_icons.html @@ -38,7 +38,7 @@

Get data type icons

- Source: R/data-summary.R + Source: R/data-summary.R
type_icons.Rd
diff --git a/reference/ui_elements.html b/reference/ui_elements.html index 0f48fd27..8498b5b0 100644 --- a/reference/ui_elements.html +++ b/reference/ui_elements.html @@ -38,7 +38,7 @@

FreesearchR UI elements list

- Source: R/ui_elements.R + Source: R/ui_elements.R
ui_elements.Rd
diff --git a/reference/unique_names.html b/reference/unique_names.html index 41390af2..18e525c4 100644 --- a/reference/unique_names.html +++ b/reference/unique_names.html @@ -42,7 +42,7 @@ If a variable name already exists, a number will be appended.">

Make unique variable names

- Source: R/update-factor-ext.R + Source: R/update-factor-ext.R
unique_names.Rd
diff --git a/reference/unique_short.html b/reference/unique_short.html index 2c797bf6..802acecf 100644 --- a/reference/unique_short.html +++ b/reference/unique_short.html @@ -40,7 +40,7 @@ strings.">

Create unique short names of character vector items based on index

- Source: R/visual_summary.R + Source: R/visual_summary.R
unique_short.Rd
diff --git a/reference/update-factor.html b/reference/update-factor.html index f13de81b..c6952184 100644 --- a/reference/update-factor.html +++ b/reference/update-factor.html @@ -38,7 +38,7 @@

Module to Reorder the Levels of a Factor Variable

- Source: R/update-factor-ext.R + Source: R/update-factor-ext.R
update-factor.Rd
diff --git a/reference/update-variables.html b/reference/update-variables.html index cbb954ff..2a2964b5 100644 --- a/reference/update-variables.html +++ b/reference/update-variables.html @@ -38,7 +38,7 @@

Select, rename and convert variables

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
update-variables.Rd
diff --git a/reference/update_variables_datagrid.html b/reference/update_variables_datagrid.html index 066f6e04..8df0aad2 100644 --- a/reference/update_variables_datagrid.html +++ b/reference/update_variables_datagrid.html @@ -38,7 +38,7 @@

Modified from the datamods pacakge

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
update_variables_datagrid.Rd
diff --git a/reference/validation.html b/reference/validation.html index 5f163a03..4ab2b0e5 100644 --- a/reference/validation.html +++ b/reference/validation.html @@ -38,7 +38,7 @@

Validation module

- Source: R/validation.R + Source: R/validation.R
validation.Rd
diff --git a/reference/validation_lib.html b/reference/validation_lib.html index be6e12a6..3cf8e689 100644 --- a/reference/validation_lib.html +++ b/reference/validation_lib.html @@ -38,7 +38,7 @@

Validation library

- Source: R/validation.R + Source: R/validation.R
validation_lib.Rd
diff --git a/reference/vars_filter_validate.html b/reference/vars_filter_validate.html index 26d43b6f..b2442aac 100644 --- a/reference/vars_filter_validate.html +++ b/reference/vars_filter_validate.html @@ -38,7 +38,7 @@

Variable filter test wrapper

- Source: R/validation.R + Source: R/validation.R
vars_filter_validate.Rd
diff --git a/reference/vectorSelectInput.html b/reference/vectorSelectInput.html index 227804e6..6eb89ed9 100644 --- a/reference/vectorSelectInput.html +++ b/reference/vectorSelectInput.html @@ -38,7 +38,7 @@

A selectizeInput customized for named vectors

- Source: R/custom_SelectInput.R + Source: R/custom_SelectInput.R
vectorSelectInput.Rd
diff --git a/reference/vertical_stacked_bars.html b/reference/vertical_stacked_bars.html index 539466d3..78e3e2eb 100644 --- a/reference/vertical_stacked_bars.html +++ b/reference/vertical_stacked_bars.html @@ -38,7 +38,7 @@

Vertical stacked bar plot wrapper

- Source: R/plot_hbar.R + Source: R/plot_hbar.R
vertical_stacked_bars.Rd
diff --git a/reference/visual-summary.html b/reference/visual-summary.html index d07214f5..6ccee648 100644 --- a/reference/visual-summary.html +++ b/reference/visual-summary.html @@ -46,7 +46,7 @@ Ggplot2 data summary visualisation based on visdat::vis_dat.">

Data correlations evaluation module

- Source: R/visual_summary.R + Source: R/visual_summary.R
visual-summary.Rd
diff --git a/reference/wide2long.html b/reference/wide2long.html index 946ae019..fce77b06 100644 --- a/reference/wide2long.html +++ b/reference/wide2long.html @@ -42,7 +42,7 @@ an added "ignore" string pattern or similarly. Example 2.'>

Alternative pivoting method for easily pivoting based on name pattern

- Source: R/wide2long.R + Source: R/wide2long.R
wide2long.Rd
diff --git a/reference/with_labels.html b/reference/with_labels.html index 4c577746..9fd2d7de 100644 --- a/reference/with_labels.html +++ b/reference/with_labels.html @@ -42,7 +42,7 @@ label automatically.">

Evaluate an expression while preserving column labels

- Source: R/utils-labels.R + Source: R/utils-labels.R
with_labels.Rd
diff --git a/reference/wrap_plot_list.html b/reference/wrap_plot_list.html index 239756e8..7659c41d 100644 --- a/reference/wrap_plot_list.html +++ b/reference/wrap_plot_list.html @@ -38,7 +38,7 @@

Wrapping

- Source: R/data_plots.R + Source: R/data_plots.R
wrap_plot_list.Rd
diff --git a/reference/write_quarto.html b/reference/write_quarto.html index 089a5527..2ec3cc3e 100644 --- a/reference/write_quarto.html +++ b/reference/write_quarto.html @@ -38,7 +38,7 @@

Wrapper to save data in RDS, load into specified qmd and render

- Source: R/helpers.R + Source: R/helpers.R
write_quarto.Rd
diff --git a/search.json b/search.json index e4447414..8463cafd 100644 --- a/search.json +++ b/search.json @@ -1 +1 @@ -[{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement agdamsbo@clin.au.dk. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU Affero General Public License","title":"GNU Affero General Public License","text":"Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc.  Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU Affero General Public License","text":"GNU Affero General Public License free, copyleft license software kinds works, specifically designed ensure cooperation community case network server software. licenses software practical works designed take away freedom share change works. contrast, General Public Licenses intended guarantee freedom share change versions program–make sure remains free software users. speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. Developers use General Public Licenses protect rights two steps: (1) assert copyright software, (2) offer License gives legal permission copy, distribute /modify software. secondary benefit defending users’ freedom improvements made alternate versions program, receive widespread use, become available developers incorporate. Many developers free software heartened encouraged resulting cooperation. However, case software used network servers, result may fail come . GNU General Public License permits making modified version letting public access server without ever releasing source code public. GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions.","title":"GNU Affero General Public License","text":"“License” refers version 3 GNU Affero General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. Mere interaction user computer network, transfer copy, conveying. interactive user interface displays “Appropriate Legal Notices” extent includes convenient prominently visible feature (1) displays appropriate copyright notice, (2) tells user warranty work (except extent warranties provided), licensees may convey work License, view copy License. interface presents list user commands options, menu, prominent item list meets criterion.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_1-source-code","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"1. Source Code.","title":"GNU Affero General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. However, include work’s System Libraries, general-purpose tools generally available free programs used unmodified performing activities part work. example, Corresponding Source includes interface definition files associated source files work, source code shared libraries dynamically linked subprograms work specifically designed require, intimate data communication control flow subprograms parts work. Corresponding Source need include anything users can regenerate automatically parts Corresponding Source. Corresponding Source work source code form work.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_2-basic-permissions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"2. Basic Permissions.","title":"GNU Affero General Public License","text":"rights granted License granted term copyright Program, irrevocable provided stated conditions met. License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law.","title":"GNU Affero General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies.","title":"GNU Affero General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. 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License gives permission license work way, invalidate permission separately received . work interactive user interfaces, must display Appropriate Legal Notices; however, Program interactive interfaces display Appropriate Legal Notices, work need make . compilation covered work separate independent works, nature extensions covered work, combined form larger program, volume storage distribution medium, called “aggregate” compilation resulting copyright used limit access legal rights compilation’s users beyond individual works permit. Inclusion covered work aggregate cause License apply parts aggregate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_6-conveying-non-source-forms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"6. Conveying Non-Source Forms.","title":"GNU Affero General Public License","text":"may convey covered work object code form terms sections 4 5, provided also convey machine-readable Corresponding Source terms License, one ways: Convey object code , embodied , physical product (including physical distribution medium), accompanied Corresponding Source fixed durable physical medium customarily used software interchange. Convey object code , embodied , physical product (including physical distribution medium), accompanied written offer, valid least three years valid long offer spare parts customer support product model, give anyone possesses object code either (1) copy Corresponding Source software product covered License, durable physical medium customarily used software interchange, price reasonable cost physically performing conveying source, (2) access copy Corresponding Source network server charge. 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Termination.","title":"GNU Affero General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. 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Therefore, modifying propagating covered work, indicate acceptance License .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_10-automatic-licensing-of-downstream-recipients","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"10. Automatic Licensing of Downstream Recipients.","title":"GNU Affero General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. 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Remote Network Interaction; Use with the GNU General Public License.","title":"GNU Affero General Public License","text":"Notwithstanding provision License, modify Program, modified version must prominently offer users interacting remotely computer network (version supports interaction) opportunity receive Corresponding Source version providing access Corresponding Source network server charge, standard customary means facilitating copying software. Corresponding Source shall include Corresponding Source work covered version 3 GNU General Public License incorporated pursuant following paragraph. Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU General Public License single combined work, convey resulting work. terms License continue apply part covered work, work combined remain governed version 3 GNU General Public License.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License.","title":"GNU Affero General Public License","text":"Free Software Foundation may publish revised /new versions GNU Affero General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":" Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see ."},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set also available, collection questions answers project use FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"how-do-i-merge-multiple-datasets","dir":"","previous_headings":"","what":"How do I merge multiple datasets?","title":"Questions and answers","text":"can merge multiple sheets ods xls(x) files import common key variable present selected sheets. Multiple file upload/merge currently supported.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, however, version 25.4.2, FreesearchR app considered functional can used data evaluation analyses. (actual list quite long growing) planned new features improvements:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"implementation-in-real-world-clinical-studies-and-projects","dir":"","previous_headings":"","what":"Implementation in real world clinical studies and projects","title":"Project roadmap","text":"really main goal whole project.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"new-features","dir":"","previous_headings":"","what":"New features:","title":"Project roadmap","text":"Merge data multiple sources (can merge sheets workbook (xls ods), allow merging several files /REDcap data) Additional plot types (bar plots, others…) Missingness analysis panel","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"expanded-options-for-regression-models","dir":"","previous_headings":"","what":"Expanded options for regression models:","title":"Project roadmap","text":"Expansion regression analysis functionality put hold now focus basic use-cases): study designs Cross-sectional data analyses Longitudinal data analyses Survival analysis regression models Stratified analyses Mixed models repeated measures Cox regression analyses Data handling Transforming data (transpose pivoting)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"improved-documentation","dir":"","previous_headings":"","what":"Improved documentation:","title":"Project roadmap","text":"Video walk-central functions","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"platform-info","dir":"Articles","previous_headings":"","what":"Platform info","title":"Session info","text":"","code":"FreesearchR:::session_data$platform |> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"libraries","dir":"Articles","previous_headings":"","what":"Libraries","title":"Session info","text":"","code":"FreesearchR:::session_data$libs|> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Jutta Mari Adelin Jørgensen. Contributor. Anne Brink Behrndtz. Contributor.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2026). FreesearchR: Easy data analysis clinicians. R package version 26.3.2, https://github.com/agdamsbo/FreesearchR.","code":"@Manual{, title = {FreesearchR: Easy data analysis for clinicians}, author = {Andreas Gammelgaard Damsbo}, year = {2026}, note = {R package version 26.3.2}, url = {https://github.com/agdamsbo/FreesearchR}, }"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"freesearchr-","dir":"","previous_headings":"","what":"Easy data analysis for clinicians","title":"Easy data analysis for clinicians","text":"FreesearchR simple, clinical health data exploration analysis tool democratise clinical research assisting researcher easily evaluate analyse data export publication ready results. FreesearchR free open-source, accessible web browser link. app can also run locally, please see . feedback welcome can shared GitHub issue. suggestions collaboration much welcomed. Please reach !","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"motivation","dir":"","previous_headings":"","what":"Motivation","title":"Easy data analysis for clinicians","text":"app following simple goals: help health clinician getting overview data quality improvement projects clinical research help learners get good start analysing data coding R ease quick data overview basic visualisations clinical researcher","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-locally-on-your-own-machine","dir":"","previous_headings":"","what":"Run locally on your own machine","title":"Easy data analysis for clinicians","text":"FreesearchR app can also run machine data transmitted anywhere. Blow available options.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-from-r-or-rstduio","dir":"","previous_headings":"Run locally on your own machine","what":"Run from R (or RStduio)","title":"Easy data analysis for clinicians","text":"Working data R, FreesearchR quick easy tool get overview perform first explorative analyses get going. data available R session available FreesearchR app. Just follow steps get going: Requirement: need R installed possibly editor like RStudio. open R console copy/paste following code, install devtools package FreesearchR R-package dependencies:","code":"require(\"devtools\") devtools::install_github(\"agdamsbo/FreesearchR\") library(FreesearchR) # By loading mtcars to the environment, it will be available # in the interface like any other data.frame data(mtcars) launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"running-with-docker-compose","dir":"","previous_headings":"Run locally on your own machine","what":"Running with docker compose","title":"Easy data analysis for clinicians","text":"advanced users, wanting deploy FreesearchR app run anywhere, docker image available. minimal docker_compose.yml file:","code":"services: freesearchr: image: ghcr.io/agdamsbo/freesearchr:latest ports: - '3838:3838' restart: on-failure"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Easy data analysis for clinicians","text":"Please note FreesearchR project published Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"translators","dir":"","previous_headings":"","what":"Translators","title":"Easy data analysis for clinicians","text":"Thank much translators helped translate validate translation drafts.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"acknowledgements","dir":"","previous_headings":"","what":"Acknowledgements","title":"Easy data analysis for clinicians","text":"Like project, project never possible without great work others. sources packages used: FreesearchR app built Shiny based R. gtsummary: superb flexible way create publication-ready analytical summary tables. dreamRs: maintainers broad selection great extensions tools Shiny. easystats: performance::check_model() function central sparking idea create data analysis tool. IDEAfilter: visually appealing data filter function based {shinyDataFilter}. project written human AI-based tools. online FreesearchR app contains tracking script, transmitting minimal data usage. uploaded data transmitted anywhere. look tracking data . tracking data sent running app locally (see ).","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":null,"dir":"Reference","previous_headings":"","what":"Use the FreesearchR colors — FreesearchR_palette","title":"Use the FreesearchR colors — FreesearchR_palette","text":"Use FreesearchR colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Use the FreesearchR colors — FreesearchR_palette","text":"n number colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Use the FreesearchR colors — FreesearchR_palette","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n=7) #> [1] \"#1E4A8F\" \"#FF6F61\" \"#00C896\" \"#FFB100\" \"#CC2E25\" \"#8A4FFF\" \"#11A0EC\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":null,"dir":"Reference","previous_headings":"","what":"Custom theme based on unity — FreesearchR_theme","title":"Custom theme based on unity — FreesearchR_theme","text":"Custom theme based unity","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Custom theme based on unity — FreesearchR_theme","text":"","code":"FreesearchR_theme( ..., version = 5, primary = FreesearchR_colors(\"primary\"), secondary = FreesearchR_colors(\"secondary\"), bootswatch = \"united\", base_font = bslib::font_google(\"Montserrat\"), heading_font = bslib::font_google(\"Public Sans\", wght = \"700\"), code_font = bslib::font_google(\"Open Sans\"), success = FreesearchR_colors(\"success\"), info = FreesearchR_colors(\"info\"), warning = FreesearchR_colors(\"warning\"), danger = FreesearchR_colors(\"danger\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Custom theme based on unity — FreesearchR_theme","text":"... everything passed bslib::bs_theme()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Custom theme based on unity — FreesearchR_theme","text":"theme list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Custom theme based on unity — FreesearchR_theme","text":"","code":"if (interactive()) { bs_theme_preview(FreesearchR_theme) }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\", fun = class_icons)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |> overview_vars() |> toastui::datagrid() |> add_class_icon() {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[6,6,4,6,8,6,8,4,4,6,6,8,8,8,8,8,8,4,4,4,4,8,8,8,8,4,4,4,8,6,8,4],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[0,0,1,1,0,1,0,1,1,1,1,0,0,0,0,0,0,1,1,1,1,0,0,0,0,1,0,1,0,0,0,1],[1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,1,1,1,1,1,1,1],[4,4,4,3,3,3,3,4,4,4,4,3,3,3,3,3,3,4,4,4,3,3,3,3,3,4,5,5,5,5,5,4],[4,4,1,1,2,1,4,2,2,4,4,3,3,3,4,4,4,1,2,1,1,2,2,4,2,1,2,2,4,6,8,2]]],\"colnames\":[\"icon\",\"class\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"icon\",\"name\":\"icon\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.format\",\"options\":{\"formatted\":[\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\"]}},\"width\":60},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}}],\"bodyHeight\":\"fitToParent\",\"draggable\":false,\"usageStatistics\":false,\"contextMenu\":null,\"rowHeight\":\"auto\"},\"theme\":\"clean\",\"themeOptions\":{\"cell\":{\"normal\":{\"showHorizontalBorder\":true}}},\"language\":\"en\",\"languageOptions\":[],\"filters\":false,\"rowAttributes\":[],\"validationInput\":false,\"dataAsInput\":false,\"dragInput\":false},\"evals\":[\"options.columns.1.renderer.type\"],\"jsHooks\":[]}"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":null,"dir":"Reference","previous_headings":"","what":"Add sparkline to datagrid — add_sparkline","title":"Add sparkline to datagrid — add_sparkline","text":"Add sparkline datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"add_sparkline( grid, column = \"vals\", color.main = \"#2a8484\", color.sec = \"#84EF84\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add sparkline to datagrid — add_sparkline","text":"grid grid column clumn transform","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add sparkline to datagrid — add_sparkline","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"grid <- mtcars |> default_parsing() |> overview_vars() |> toastui::datagrid() |> add_sparkline() grid {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"factor\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"logical\",\"logical\",\"factor\",\"factor\"],[\"numeric\",\"factor\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"logical\",\"logical\",\"factor\",\"factor\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[\"6\",\"6\",\"4\",\"6\",\"8\",\"6\",\"8\",\"4\",\"4\",\"6\",\"6\",\"8\",\"8\",\"8\",\"8\",\"8\",\"8\",\"4\",\"4\",\"4\",\"4\",\"8\",\"8\",\"8\",\"8\",\"4\",\"4\",\"4\",\"8\",\"6\",\"8\",\"4\"],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[false,false,true,true,false,true,false,true,true,true,true,false,false,false,false,false,false,true,true,true,true,false,false,false,false,true,false,true,false,false,false,true],[true,true,true,false,false,false,false,false,false,false,false,false,false,false,false,false,false,true,true,true,false,false,false,false,false,true,true,true,true,true,true,true],[\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"3\",\"4\",\"5\",\"5\",\"5\",\"5\",\"5\",\"4\"],[\"4\",\"4\",\"1\",\"1\",\"2\",\"1\",\"4\",\"2\",\"2\",\"4\",\"4\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"1\",\"2\",\"1\",\"1\",\"2\",\"2\",\"4\",\"2\",\"1\",\"2\",\"2\",\"4\",\"6\",\"8\",\"2\"]]],\"colnames\":[\"icon\",\"class\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"icon\",\"name\":\"icon\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.htmlwidgets\",\"options\":{\"rendered\":[\"
<\\/div>\\n