diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index ac77fdd..8867f3c 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -32,7 +32,7 @@

Contributor Covenant Code of Conduct

- Source: CODE_OF_CONDUCT.md + Source: CODE_OF_CONDUCT.md
diff --git a/LICENSE.html b/LICENSE.html index bc3219f..01338e5 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -32,7 +32,7 @@

GNU Affero General Public License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/QA.html b/QA.html index 9b6481e..d62fbf4 100644 --- a/QA.html +++ b/QA.html @@ -32,7 +32,7 @@

Questions and answers

- Source: QA.md + Source: QA.md
diff --git a/ROADMAP.html b/ROADMAP.html index 333d198..06b9055 100644 --- a/ROADMAP.html +++ b/ROADMAP.html @@ -32,7 +32,7 @@

Project roadmap

- Source: ROADMAP.md + Source: ROADMAP.md
diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html index 74ee4ff..dfb28ad 100644 --- a/articles/FreesearchR.html +++ b/articles/FreesearchR.html @@ -59,7 +59,7 @@

FreesearchR

- Source: vignettes/FreesearchR.Rmd + Source: vignettes/FreesearchR.Rmd
FreesearchR.Rmd
diff --git a/authors.html b/authors.html index 48bcd70..d3e3c5e 100644 --- a/authors.html +++ b/authors.html @@ -45,7 +45,7 @@

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Damsbo A (2025). FreesearchR: Browser Based Data Analysis. diff --git a/index.html b/index.html index 1bd5241..8b78c55 100644 --- a/index.html +++ b/index.html @@ -59,7 +59,7 @@

This package is the backbone of the FreesearchR, a free and open-source browser based data exploration and analysis tool for clinicians and researchers with publication ready output.

This package and the FreesearchR-tool is part of a larger initiative to democratize health data analysis and remove barriers for clinicians to engage in health research.

-

the FreesearchR-tool is online and accessible here: link to the app freely hosted on shinyapps.io. All feedback is welcome and can be shared as a GitHub issue.

+

the FreesearchR-tool is online and accessible here: link to the app freely hosted on shinyapps.io. All feedback is welcome and can be shared as a GitHub issue.

Initiatives for funding continued development of the tool and surrounding initiatives is ongoing.

Install locally diff --git a/news/index.html b/news/index.html index 24b13fa..b2ebe6d 100644 --- a/news/index.html +++ b/news/index.html @@ -32,7 +32,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index ed7701f..e5c7756 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -3,7 +3,7 @@ pkgdown: 2.1.1 pkgdown_sha: ~ articles: FreesearchR: FreesearchR.html -last_built: 2025-04-02T10:12Z +last_built: 2025-04-02T10:29Z urls: reference: https://agdamsbo.github.io/FreesearchR/reference article: https://agdamsbo.github.io/FreesearchR/articles diff --git a/reference/add_class_icon.html b/reference/add_class_icon.html index d5bc4cc..1306e8b 100644 --- a/reference/add_class_icon.html +++ b/reference/add_class_icon.html @@ -32,7 +32,7 @@

Convert class grid column to icon

- Source: R/data-summary.R + Source: R/data-summary.R
add_class_icon.Rd
diff --git a/reference/add_sparkline.html b/reference/add_sparkline.html index bd26e53..7a63e38 100644 --- a/reference/add_sparkline.html +++ b/reference/add_sparkline.html @@ -32,7 +32,7 @@

Add sparkline to datagrid

- Source: R/data-summary.R + Source: R/data-summary.R
add_sparkline.Rd
diff --git a/reference/all_but.html b/reference/all_but.html index ff27760..4d1e597 100644 --- a/reference/all_but.html +++ b/reference/all_but.html @@ -32,7 +32,7 @@

Select all from vector but

- Source: R/data_plots.R + Source: R/data_plots.R
all_but.Rd
diff --git a/reference/allign_axes.html b/reference/allign_axes.html index 923d527..c84eac1 100644 --- a/reference/allign_axes.html +++ b/reference/allign_axes.html @@ -32,7 +32,7 @@

Alligns axes between plots

- Source: R/data_plots.R + Source: R/data_plots.R
allign_axes.Rd
diff --git a/reference/append_list.html b/reference/append_list.html index 1a8b224..ab6b230 100644 --- a/reference/append_list.html +++ b/reference/append_list.html @@ -32,7 +32,7 @@

Append list with named index

- Source: R/helpers.R + Source: R/helpers.R
append_list.Rd
diff --git a/reference/argsstring2list.html b/reference/argsstring2list.html index 4f1196c..9391cfb 100644 --- a/reference/argsstring2list.html +++ b/reference/argsstring2list.html @@ -32,7 +32,7 @@

Convert string of arguments to list of arguments

- Source: R/helpers.R + Source: R/helpers.R
argsstring2list.Rd
diff --git a/reference/baseline_table.html b/reference/baseline_table.html index 408a6fc..f47f5d3 100644 --- a/reference/baseline_table.html +++ b/reference/baseline_table.html @@ -32,7 +32,7 @@

Print a flexible baseline characteristics table

- Source: R/baseline_table.R + Source: R/baseline_table.R
baseline_table.Rd
diff --git a/reference/clean_common_axis.html b/reference/clean_common_axis.html index 89ef639..9982ddd 100644 --- a/reference/clean_common_axis.html +++ b/reference/clean_common_axis.html @@ -32,7 +32,7 @@

Extract and clean axis ranges

- Source: R/data_plots.R + Source: R/data_plots.R
clean_common_axis.Rd
diff --git a/reference/clean_date.html b/reference/clean_date.html index 58b926d..9c0353e 100644 --- a/reference/clean_date.html +++ b/reference/clean_date.html @@ -32,7 +32,7 @@

Attempts at applying uniform date format

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
clean_date.Rd
diff --git a/reference/clean_sep.html b/reference/clean_sep.html index b1f09d8..8a94522 100644 --- a/reference/clean_sep.html +++ b/reference/clean_sep.html @@ -32,7 +32,7 @@

gsub wrapper for piping with default values for separator substituting

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
clean_sep.Rd
diff --git a/reference/columnSelectInput.html b/reference/columnSelectInput.html index b843054..d3ddff2 100644 --- a/reference/columnSelectInput.html +++ b/reference/columnSelectInput.html @@ -34,7 +34,7 @@ Adds the option to select "none" which is handled later'>

A selectizeInput customized for data frames with column labels

- Source: R/custom_SelectInput.R + Source: R/custom_SelectInput.R
columnSelectInput.Rd
diff --git a/reference/contrast_text.html b/reference/contrast_text.html index 9def4ca..0985fee 100644 --- a/reference/contrast_text.html +++ b/reference/contrast_text.html @@ -34,7 +34,7 @@ background color.">

Contrast Text Color

- Source: R/contrast_text.R + Source: R/contrast_text.R
contrast_text.Rd
diff --git a/reference/create_baseline.html b/reference/create_baseline.html index 40daa60..f38cd6d 100644 --- a/reference/create_baseline.html +++ b/reference/create_baseline.html @@ -32,7 +32,7 @@

Create a baseline table

- Source: R/baseline_table.R + Source: R/baseline_table.R
create_baseline.Rd
diff --git a/reference/create_log_tics.html b/reference/create_log_tics.html index 362fad4..2221718 100644 --- a/reference/create_log_tics.html +++ b/reference/create_log_tics.html @@ -32,7 +32,7 @@

Create summetric log ticks

- Source: R/regression_plot.R + Source: R/regression_plot.R
create_log_tics.Rd
diff --git a/reference/create_overview_datagrid.html b/reference/create_overview_datagrid.html index f61dd4a..1b02f7d 100644 --- a/reference/create_overview_datagrid.html +++ b/reference/create_overview_datagrid.html @@ -32,7 +32,7 @@

Create a data overview datagrid

- Source: R/data-summary.R + Source: R/data-summary.R
create_overview_datagrid.Rd
diff --git a/reference/custom_theme.html b/reference/custom_theme.html index 62c7c09..d40b0c3 100644 --- a/reference/custom_theme.html +++ b/reference/custom_theme.html @@ -32,7 +32,7 @@

Custom theme based on unity

- Source: R/theme.R + Source: R/theme.R
custom_theme.Rd
diff --git a/reference/cut-variable.html b/reference/cut-variable.html index 6f0def8..1f78a35 100644 --- a/reference/cut-variable.html +++ b/reference/cut-variable.html @@ -32,7 +32,7 @@

Module to Convert Numeric to Factor

- Source: R/cut-variable-dates.R + Source: R/cut-variable-dates.R
cut-variable.Rd
diff --git a/reference/cut.html b/reference/cut.html index 210708b..61279f9 100644 --- a/reference/cut.html +++ b/reference/cut.html @@ -32,7 +32,7 @@

Extended cutting function

- Source: R/cut-variable-dates.R + Source: R/cut-variable-dates.R
cut.Rd
diff --git a/reference/data-correlations.html b/reference/data-correlations.html index 643f2ea..f13d8fb 100644 --- a/reference/data-correlations.html +++ b/reference/data-correlations.html @@ -32,7 +32,7 @@

Data correlations evaluation module

- Source: R/correlations-module.R + Source: R/correlations-module.R
data-correlations.Rd
diff --git a/reference/data-import.html b/reference/data-import.html index eebfd3f..04b9c5b 100644 --- a/reference/data-import.html +++ b/reference/data-import.html @@ -32,7 +32,7 @@

Test app for the data-import module

- Source: R/data-import.R + Source: R/data-import.R
data-import.Rd
diff --git a/reference/data-plots.html b/reference/data-plots.html index 28ac1d9..973b67a 100644 --- a/reference/data-plots.html +++ b/reference/data-plots.html @@ -50,7 +50,7 @@ Beatiful violin plot">

Data correlations evaluation module

- Source: R/data_plots.R, R/plot_box.R, R/plot_hbar.R, and 4 more + Source: R/data_plots.R, R/plot_box.R, R/plot_hbar.R, and 4 more
data-plots.Rd
diff --git a/reference/data-summary.html b/reference/data-summary.html index 41b6b27..8542983 100644 --- a/reference/data-summary.html +++ b/reference/data-summary.html @@ -32,7 +32,7 @@

Data summary module

- Source: R/data-summary.R + Source: R/data-summary.R
data-summary.Rd
diff --git a/reference/data_description.html b/reference/data_description.html index 5edd627..280f888 100644 --- a/reference/data_description.html +++ b/reference/data_description.html @@ -32,7 +32,7 @@

Ultra short data dascription

- Source: R/helpers.R + Source: R/helpers.R
data_description.Rd
diff --git a/reference/data_type.html b/reference/data_type.html index b1119dd..f330c3b 100644 --- a/reference/data_type.html +++ b/reference/data_type.html @@ -32,7 +32,7 @@

Data type assessment

- Source: R/regression_model.R + Source: R/regression_model.R
data_type.Rd
diff --git a/reference/default_format_arguments.html b/reference/default_format_arguments.html index 5334cd2..1db0fb3 100644 --- a/reference/default_format_arguments.html +++ b/reference/default_format_arguments.html @@ -32,7 +32,7 @@

Defaults qmd formats

- Source: R/report.R + Source: R/report.R
default_format_arguments.Rd
diff --git a/reference/default_parsing.html b/reference/default_parsing.html index d77d156..7796429 100644 --- a/reference/default_parsing.html +++ b/reference/default_parsing.html @@ -32,7 +32,7 @@

Default data parsing

- Source: R/helpers.R + Source: R/helpers.R
default_parsing.Rd
diff --git a/reference/drop_empty_event.html b/reference/drop_empty_event.html index 7de375d..fe45f61 100644 --- a/reference/drop_empty_event.html +++ b/reference/drop_empty_event.html @@ -32,7 +32,7 @@

Drop empty events from REDCap export

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
drop_empty_event.Rd
diff --git a/reference/factorize.html b/reference/factorize.html index 5101db7..7df74b4 100644 --- a/reference/factorize.html +++ b/reference/factorize.html @@ -32,7 +32,7 @@

Factorize variables in data.frame

- Source: R/helpers.R + Source: R/helpers.R
factorize.Rd
diff --git a/reference/file_export.html b/reference/file_export.html index b43a654..9044a9e 100644 --- a/reference/file_export.html +++ b/reference/file_export.html @@ -32,7 +32,7 @@

Title

- Source: R/helpers.R + Source: R/helpers.R
file_export.Rd
diff --git a/reference/format_writer.html b/reference/format_writer.html index be5d71b..a2e9b26 100644 --- a/reference/format_writer.html +++ b/reference/format_writer.html @@ -32,7 +32,7 @@

Merges list of named arguments for qmd header generation

- Source: R/report.R + Source: R/report.R
format_writer.Rd
diff --git a/reference/get_fun_options.html b/reference/get_fun_options.html index 6b16888..78543ea 100644 --- a/reference/get_fun_options.html +++ b/reference/get_fun_options.html @@ -32,7 +32,7 @@

Get the function options based on the selected function description

- Source: R/regression_model.R + Source: R/regression_model.R
get_fun_options.Rd
diff --git a/reference/get_label.html b/reference/get_label.html index caf61b3..566ec82 100644 --- a/reference/get_label.html +++ b/reference/get_label.html @@ -32,7 +32,7 @@

Print label, and if missing print variable name

- Source: R/data_plots.R + Source: R/data_plots.R
get_label.Rd
diff --git a/reference/get_plot_options.html b/reference/get_plot_options.html index 181eb9c..71220e9 100644 --- a/reference/get_plot_options.html +++ b/reference/get_plot_options.html @@ -32,7 +32,7 @@

Get the function options based on the selected function description

- Source: R/data_plots.R + Source: R/data_plots.R
get_plot_options.Rd
diff --git a/reference/getfun.html b/reference/getfun.html index 28e6382..e4aa661 100644 --- a/reference/getfun.html +++ b/reference/getfun.html @@ -32,7 +32,7 @@

Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'

- Source: R/helpers.R + Source: R/helpers.R
getfun.Rd
@@ -133,7 +133,7 @@ #> z$qr <- NULL #> z #> } -#> <bytecode: 0x5577adf306d8> +#> <bytecode: 0x55e288962d50> #> <environment: namespace:stats>

diff --git a/reference/gg_theme_export.html b/reference/gg_theme_export.html index 1d80618..0c31d8a 100644 --- a/reference/gg_theme_export.html +++ b/reference/gg_theme_export.html @@ -32,7 +32,7 @@

GGplot default theme for plotting export objects

- Source: R/theme.R + Source: R/theme.R
gg_theme_export.Rd
diff --git a/reference/gg_theme_shiny.html b/reference/gg_theme_shiny.html index fdd774c..24e361c 100644 --- a/reference/gg_theme_shiny.html +++ b/reference/gg_theme_shiny.html @@ -32,7 +32,7 @@

GGplot default theme for plotting in Shiny

- Source: R/theme.R + Source: R/theme.R
gg_theme_shiny.Rd
diff --git a/reference/ggeulerr.html b/reference/ggeulerr.html index 596c2e6..dbd3189 100644 --- a/reference/ggeulerr.html +++ b/reference/ggeulerr.html @@ -36,7 +36,7 @@ but plots it using ggplot2">

Area proportional venn diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
ggeulerr.Rd
diff --git a/reference/grepl_fix.html b/reference/grepl_fix.html index 6bcec81..f0f9242 100644 --- a/reference/grepl_fix.html +++ b/reference/grepl_fix.html @@ -32,7 +32,7 @@

Matches pattern to vector based on match type

- Source: R/wide2long.R + Source: R/wide2long.R
grepl_fix.Rd
diff --git a/reference/import-file-type.html b/reference/import-file-type.html index 2e0e784..590b0c0 100644 --- a/reference/import-file-type.html +++ b/reference/import-file-type.html @@ -32,7 +32,7 @@

Wrapper to ease data file import

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file-type.Rd
diff --git a/reference/import-file.html b/reference/import-file.html index 682b36d..52c438d 100644 --- a/reference/import-file.html +++ b/reference/import-file.html @@ -32,7 +32,7 @@

Import data from a file

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file.Rd
diff --git a/reference/import-file_module.html b/reference/import-file_module.html index a0257d2..1100d5f 100644 --- a/reference/import-file_module.html +++ b/reference/import-file_module.html @@ -32,7 +32,7 @@

Test app for the import_file module

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file_module.Rd
diff --git a/reference/index_embed.html b/reference/index_embed.html index 794f674..0387a89 100644 --- a/reference/index_embed.html +++ b/reference/index_embed.html @@ -32,7 +32,7 @@

Split vector by an index and embed addition

- Source: R/report.R + Source: R/report.R
index_embed.Rd
diff --git a/reference/is_any_class.html b/reference/is_any_class.html index eb5096e..2c46fa5 100644 --- a/reference/is_any_class.html +++ b/reference/is_any_class.html @@ -32,7 +32,7 @@

Test class

- Source: R/cut-variable-dates.R + Source: R/cut-variable-dates.R
is_any_class.Rd
diff --git a/reference/is_consecutive.html b/reference/is_consecutive.html index b5847e8..e6706b6 100644 --- a/reference/is_consecutive.html +++ b/reference/is_consecutive.html @@ -32,7 +32,7 @@

Checks if elements in vector are equally spaced as indication of ID

- Source: R/data-summary.R + Source: R/data-summary.R
is_consecutive.Rd
diff --git a/reference/is_datetime.html b/reference/is_datetime.html index 8f6830c..caf6050 100644 --- a/reference/is_datetime.html +++ b/reference/is_datetime.html @@ -32,7 +32,7 @@

Test is date/datetime/time

- Source: R/cut-variable-dates.R + Source: R/cut-variable-dates.R
is_datetime.Rd
diff --git a/reference/is_valid_redcap_url.html b/reference/is_valid_redcap_url.html index 849f685..8975550 100644 --- a/reference/is_valid_redcap_url.html +++ b/reference/is_valid_redcap_url.html @@ -32,7 +32,7 @@

Test if url is valid format for REDCap API

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
is_valid_redcap_url.Rd
diff --git a/reference/is_valid_token.html b/reference/is_valid_token.html index 405ac2e..6b18468 100644 --- a/reference/is_valid_token.html +++ b/reference/is_valid_token.html @@ -32,7 +32,7 @@

Validate REDCap token

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
is_valid_token.Rd
diff --git a/reference/launch_FreesearchR.html b/reference/launch_FreesearchR.html index 9270480..a56a18e 100644 --- a/reference/launch_FreesearchR.html +++ b/reference/launch_FreesearchR.html @@ -32,7 +32,7 @@

Easily launch the FreesearchR app

- Source: R/launch_FreesearchR.R + Source: R/launch_FreesearchR.R
launch_FreesearchR.Rd
diff --git a/reference/limit_log.html b/reference/limit_log.html index 99dbdd6..2df1696 100644 --- a/reference/limit_log.html +++ b/reference/limit_log.html @@ -32,7 +32,7 @@

Easily round log scale limits for nice plots

- Source: R/regression_plot.R + Source: R/regression_plot.R
limit_log.Rd
diff --git a/reference/line_break.html b/reference/line_break.html index 6ca25fa..5040022 100644 --- a/reference/line_break.html +++ b/reference/line_break.html @@ -32,7 +32,7 @@

Line breaking at given number of characters for nicely plotting labels

- Source: R/data_plots.R + Source: R/data_plots.R
line_break.Rd
diff --git a/reference/m_datafileUI.html b/reference/m_datafileUI.html index feeff40..6801673 100644 --- a/reference/m_datafileUI.html +++ b/reference/m_datafileUI.html @@ -32,7 +32,7 @@

Shiny UI module to load a data file

- Source: R/file-import-module.R + Source: R/file-import-module.R
m_datafileUI.Rd
diff --git a/reference/merge_long.html b/reference/merge_long.html index 4a2283d..36154ab 100644 --- a/reference/merge_long.html +++ b/reference/merge_long.html @@ -32,7 +32,7 @@

Wrapper to pivot gtsummary table data to long for plotting

- Source: R/regression_plot.R + Source: R/regression_plot.R
merge_long.Rd
diff --git a/reference/missing_fraction.html b/reference/missing_fraction.html index 2979633..275f8d9 100644 --- a/reference/missing_fraction.html +++ b/reference/missing_fraction.html @@ -32,7 +32,7 @@

Get missingsness fraction

- Source: R/helpers.R + Source: R/helpers.R
missing_fraction.Rd
diff --git a/reference/modify_qmd.html b/reference/modify_qmd.html index 0ee167d..3a088d7 100644 --- a/reference/modify_qmd.html +++ b/reference/modify_qmd.html @@ -32,7 +32,7 @@

Wrapper to modify quarto file to render specific formats

- Source: R/report.R + Source: R/report.R
modify_qmd.Rd
diff --git a/reference/overview_vars.html b/reference/overview_vars.html index 7d2ea64..14af002 100644 --- a/reference/overview_vars.html +++ b/reference/overview_vars.html @@ -32,7 +32,7 @@

Create a data overview data.frame ready for sparklines

- Source: R/data-summary.R + Source: R/data-summary.R
overview_vars.Rd
diff --git a/reference/plot.tbl_regression.html b/reference/plot.tbl_regression.html index 73c45f4..0bbe4ef 100644 --- a/reference/plot.tbl_regression.html +++ b/reference/plot.tbl_regression.html @@ -32,7 +32,7 @@

Regression coef plot from gtsummary. Slightly modified to pass on arguments

- Source: R/regression_plot.R + Source: R/regression_plot.R
plot.tbl_regression.Rd
diff --git a/reference/plot_euler.html b/reference/plot_euler.html index 6fb3154..e020101 100644 --- a/reference/plot_euler.html +++ b/reference/plot_euler.html @@ -32,7 +32,7 @@

Easily plot euler diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
plot_euler.Rd
diff --git a/reference/plot_euler_single.html b/reference/plot_euler_single.html index 7b54ef7..1044f8d 100644 --- a/reference/plot_euler_single.html +++ b/reference/plot_euler_single.html @@ -32,7 +32,7 @@

Easily plot single euler diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
plot_euler_single.Rd
diff --git a/reference/plot_sankey_single.html b/reference/plot_sankey_single.html index 26eee3d..06a2197 100644 --- a/reference/plot_sankey_single.html +++ b/reference/plot_sankey_single.html @@ -32,7 +32,7 @@

Beautiful sankey plot

- Source: R/plot_sankey.R + Source: R/plot_sankey.R
plot_sankey_single.Rd
diff --git a/reference/possible_functions.html b/reference/possible_functions.html index 178cb57..ddbe185 100644 --- a/reference/possible_functions.html +++ b/reference/possible_functions.html @@ -32,7 +32,7 @@

Get possible regression models

- Source: R/regression_model.R + Source: R/regression_model.R
possible_functions.Rd
diff --git a/reference/possible_plots.html b/reference/possible_plots.html index 26b935c..1e1d5fa 100644 --- a/reference/possible_plots.html +++ b/reference/possible_plots.html @@ -32,7 +32,7 @@

Get possible regression models

- Source: R/data_plots.R + Source: R/data_plots.R
possible_plots.Rd
diff --git a/reference/read_input.html b/reference/read_input.html index d13c68d..21040ce 100644 --- a/reference/read_input.html +++ b/reference/read_input.html @@ -32,7 +32,7 @@

Flexible file import based on extension

- Source: R/helpers.R + Source: R/helpers.R
read_input.Rd
diff --git a/reference/redcap_read_shiny_module.html b/reference/redcap_read_shiny_module.html index fb7692b..4059760 100644 --- a/reference/redcap_read_shiny_module.html +++ b/reference/redcap_read_shiny_module.html @@ -34,7 +34,7 @@ Test app for the redcap_read_shiny_module">

Shiny module to browser and export REDCap data

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
redcap_read_shiny_module.Rd
diff --git a/reference/regression_model.html b/reference/regression_model.html index cb4b534..1dd5f2d 100644 --- a/reference/regression_model.html +++ b/reference/regression_model.html @@ -32,7 +32,7 @@

Create a regression model programatically

- Source: R/regression_model.R + Source: R/regression_model.R
regression_model.Rd
diff --git a/reference/regression_table.html b/reference/regression_table.html index f4597f2..5f7935b 100644 --- a/reference/regression_table.html +++ b/reference/regression_table.html @@ -32,7 +32,7 @@

Create table of regression model

- Source: R/regression_table.R + Source: R/regression_table.R
regression_table.Rd
diff --git a/reference/remove_empty_cols.html b/reference/remove_empty_cols.html index 5bbd85e..2086299 100644 --- a/reference/remove_empty_cols.html +++ b/reference/remove_empty_cols.html @@ -32,7 +32,7 @@

Removes columns with completenes below cutoff

- Source: R/helpers.R + Source: R/helpers.R
remove_empty_cols.Rd
diff --git a/reference/remove_na_attr.html b/reference/remove_na_attr.html index 8995ad6..00204b9 100644 --- a/reference/remove_na_attr.html +++ b/reference/remove_na_attr.html @@ -32,7 +32,7 @@

Remove NA labels

- Source: R/helpers.R + Source: R/helpers.R
remove_na_attr.Rd
diff --git a/reference/repeated_instruments.html b/reference/repeated_instruments.html index 74d447a..82f1349 100644 --- a/reference/repeated_instruments.html +++ b/reference/repeated_instruments.html @@ -32,7 +32,7 @@

Get names of repeated instruments

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
repeated_instruments.Rd
diff --git a/reference/selectInputIcon.html b/reference/selectInputIcon.html index 54bb484..a413e6e 100644 --- a/reference/selectInputIcon.html +++ b/reference/selectInputIcon.html @@ -34,7 +34,7 @@ after, or on both sides of a classic selectInput.">

Create a select input control with icon(s)

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
selectInputIcon.Rd
diff --git a/reference/sort_by.html b/reference/sort_by.html index a151419..7f7aa2d 100644 --- a/reference/sort_by.html +++ b/reference/sort_by.html @@ -32,7 +32,7 @@

Drop-in replacement for the base::sort_by with option to remove NAs

- Source: R/helpers.R + Source: R/helpers.R
sort_by.Rd
diff --git a/reference/specify_qmd_format.html b/reference/specify_qmd_format.html index a09ac31..c16efd1 100644 --- a/reference/specify_qmd_format.html +++ b/reference/specify_qmd_format.html @@ -32,7 +32,7 @@

Specify format arguments to include in qmd header/frontmatter

- Source: R/report.R + Source: R/report.R
specify_qmd_format.Rd
diff --git a/reference/subset_types.html b/reference/subset_types.html index 71977e7..bcd4c2c 100644 --- a/reference/subset_types.html +++ b/reference/subset_types.html @@ -32,7 +32,7 @@

Easily subset by data type function

- Source: R/data_plots.R + Source: R/data_plots.R
subset_types.Rd
diff --git a/reference/supported_functions.html b/reference/supported_functions.html index dca1be7..3c9755e 100644 --- a/reference/supported_functions.html +++ b/reference/supported_functions.html @@ -34,7 +34,7 @@ unique for each element on list.'>

Implemented functions

- Source: R/regression_model.R + Source: R/regression_model.R
supported_functions.Rd
diff --git a/reference/supported_plots.html b/reference/supported_plots.html index 80f2952..3790082 100644 --- a/reference/supported_plots.html +++ b/reference/supported_plots.html @@ -48,7 +48,7 @@ tertiary.type: Tertiary variable data type (continuous, dichotomous or ordinal)

Implemented functions

- Source: R/data_plots.R + Source: R/data_plots.R
supported_plots.Rd
diff --git a/reference/symmetrical_scale_x_log10.html b/reference/symmetrical_scale_x_log10.html index f5b9818..1addadf 100644 --- a/reference/symmetrical_scale_x_log10.html +++ b/reference/symmetrical_scale_x_log10.html @@ -32,7 +32,7 @@

Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots

- Source: R/regression_plot.R + Source: R/regression_plot.R
symmetrical_scale_x_log10.Rd
diff --git a/reference/tbl_merge.html b/reference/tbl_merge.html index 5127a1e..c54f060 100644 --- a/reference/tbl_merge.html +++ b/reference/tbl_merge.html @@ -34,7 +34,7 @@ spanner names.">

A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.

- Source: R/regression_table.R + Source: R/regression_table.R
tbl_merge.Rd
diff --git a/reference/update-factor.html b/reference/update-factor.html index c2b4b80..85c7b5d 100644 --- a/reference/update-factor.html +++ b/reference/update-factor.html @@ -32,7 +32,7 @@

Module to Reorder the Levels of a Factor Variable

- Source: R/update-factor-ext.R + Source: R/update-factor-ext.R
update-factor.Rd
diff --git a/reference/update-variables.html b/reference/update-variables.html index 73d3894..4c18b4d 100644 --- a/reference/update-variables.html +++ b/reference/update-variables.html @@ -32,7 +32,7 @@

Select, rename and convert variables

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
update-variables.Rd
diff --git a/reference/update_variables_datagrid.html b/reference/update_variables_datagrid.html index 706cc6b..8201074 100644 --- a/reference/update_variables_datagrid.html +++ b/reference/update_variables_datagrid.html @@ -32,7 +32,7 @@

Modified from the datamods pacakge

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
update_variables_datagrid.Rd
diff --git a/reference/vectorSelectInput.html b/reference/vectorSelectInput.html index 098be37..2c3b230 100644 --- a/reference/vectorSelectInput.html +++ b/reference/vectorSelectInput.html @@ -32,7 +32,7 @@

A selectizeInput customized for named vectors

- Source: R/custom_SelectInput.R + Source: R/custom_SelectInput.R
vectorSelectInput.Rd
diff --git a/reference/vertical_stacked_bars.html b/reference/vertical_stacked_bars.html index 6bbfe83..13a97e7 100644 --- a/reference/vertical_stacked_bars.html +++ b/reference/vertical_stacked_bars.html @@ -32,7 +32,7 @@

Vertical stacked bar plot wrapper

- Source: R/plot_hbar.R + Source: R/plot_hbar.R
vertical_stacked_bars.Rd
diff --git a/reference/wide2long.html b/reference/wide2long.html index d6139ac..2fce24b 100644 --- a/reference/wide2long.html +++ b/reference/wide2long.html @@ -36,7 +36,7 @@ an added "ignore" string pattern or similarly. Example 2.'>

Alternative pivoting method for easily pivoting based on name pattern

- Source: R/wide2long.R + Source: R/wide2long.R
wide2long.Rd
diff --git a/reference/wrap_plot_list.html b/reference/wrap_plot_list.html index 62cbaff..705900b 100644 --- a/reference/wrap_plot_list.html +++ b/reference/wrap_plot_list.html @@ -32,7 +32,7 @@

Wrapping

- Source: R/data_plots.R + Source: R/data_plots.R
wrap_plot_list.Rd
diff --git a/reference/write_quarto.html b/reference/write_quarto.html index 45b4340..a040732 100644 --- a/reference/write_quarto.html +++ b/reference/write_quarto.html @@ -32,7 +32,7 @@

Wrapper to save data in RDS, load into specified qmd and render

- Source: R/helpers.R + Source: R/helpers.R
write_quarto.Rd
diff --git a/search.json b/search.json index 7279adf..dda2649 100644 --- a/search.json +++ b/search.json @@ -1 +1 @@ -[{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement agdamsbo@clin.au.dk. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. 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Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. 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Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU Affero General Public License","title":"GNU Affero General Public License","text":"Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc.  Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU Affero General Public License","text":"GNU Affero General Public License free, copyleft license software kinds works, specifically designed ensure cooperation community case network server software. licenses software practical works designed take away freedom share change works. contrast, General Public Licenses intended guarantee freedom share change versions program–make sure remains free software users. speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. Developers use General Public Licenses protect rights two steps: (1) assert copyright software, (2) offer License gives legal permission copy, distribute /modify software. secondary benefit defending users’ freedom improvements made alternate versions program, receive widespread use, become available developers incorporate. Many developers free software heartened encouraged resulting cooperation. However, case software used network servers, result may fail come . GNU General Public License permits making modified version letting public access server without ever releasing source code public. GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions.","title":"GNU Affero General Public License","text":"“License” refers version 3 GNU Affero General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. Mere interaction user computer network, transfer copy, conveying. interactive user interface displays “Appropriate Legal Notices” extent includes convenient prominently visible feature (1) displays appropriate copyright notice, (2) tells user warranty work (except extent warranties provided), licensees may convey work License, view copy License. interface presents list user commands options, menu, prominent item list meets criterion.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_1-source-code","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"1. Source Code.","title":"GNU Affero General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. However, include work’s System Libraries, general-purpose tools generally available free programs used unmodified performing activities part work. example, Corresponding Source includes interface definition files associated source files work, source code shared libraries dynamically linked subprograms work specifically designed require, intimate data communication control flow subprograms parts work. Corresponding Source need include anything users can regenerate automatically parts Corresponding Source. Corresponding Source work source code form work.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_2-basic-permissions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"2. Basic Permissions.","title":"GNU Affero General Public License","text":"rights granted License granted term copyright Program, irrevocable provided stated conditions met. License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law.","title":"GNU Affero General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies.","title":"GNU Affero General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. 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Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. 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Termination.","title":"GNU Affero General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. Termination rights section terminate licenses parties received copies rights License. rights terminated permanently reinstated, qualify receive new licenses material section 10.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_9-acceptance-not-required-for-having-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"9. Acceptance Not Required for Having Copies.","title":"GNU Affero General Public License","text":"required accept License order receive run copy Program. Ancillary propagation covered work occurring solely consequence using peer--peer transmission receive copy likewise require acceptance. However, nothing License grants permission propagate modify covered work. actions infringe copyright accept License. Therefore, modifying propagating covered work, indicate acceptance License .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_10-automatic-licensing-of-downstream-recipients","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"10. Automatic Licensing of Downstream Recipients.","title":"GNU Affero General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. Patents.","title":"GNU Affero General Public License","text":"“contributor” copyright holder authorizes use License Program work Program based. work thus licensed called contributor’s “contributor version”. contributor’s “essential patent claims” patent claims owned controlled contributor, whether already acquired hereafter acquired, infringed manner, permitted License, making, using, selling contributor version, include claims infringed consequence modification contributor version. purposes definition, “control” includes right grant patent sublicenses manner consistent requirements License. contributor grants non-exclusive, worldwide, royalty-free patent license contributor’s essential patent claims, make, use, sell, offer sale, import otherwise run, modify propagate contents contributor version. following three paragraphs, “patent license” express agreement commitment, however denominated, enforce patent (express permission practice patent covenant sue patent infringement). “grant” patent license party means make agreement commitment enforce patent party. convey covered work, knowingly relying patent license, Corresponding Source work available anyone copy, free charge terms License, publicly available network server readily accessible means, must either (1) cause Corresponding Source available, (2) arrange deprive benefit patent license particular work, (3) arrange, manner consistent requirements License, extend patent license downstream recipients. “Knowingly relying” means actual knowledge , patent license, conveying covered work country, recipient’s use covered work country, infringe one identifiable patents country reason believe valid. , pursuant connection single transaction arrangement, convey, propagate procuring conveyance , covered work, grant patent license parties receiving covered work authorizing use, propagate, modify convey specific copy covered work, patent license grant automatically extended recipients covered work works based . patent license “discriminatory” include within scope coverage, prohibits exercise , conditioned non-exercise one rights specifically granted License. may convey covered work party arrangement third party business distributing software, make payment third party based extent activity conveying work, third party grants, parties receive covered work , discriminatory patent license () connection copies covered work conveyed (copies made copies), (b) primarily connection specific products compilations contain covered work, unless entered arrangement, patent license granted, prior 28 March 2007. Nothing License shall construed excluding limiting implied license defenses infringement may otherwise available applicable patent law.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_12-no-surrender-of-others-freedom","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"12. No Surrender of Others’ Freedom.","title":"GNU Affero General Public License","text":"conditions imposed (whether court order, agreement otherwise) contradict conditions License, excuse conditions License. convey covered work satisfy simultaneously obligations License pertinent obligations, consequence may convey . example, agree terms obligate collect royalty conveying convey Program, way satisfy terms License refrain entirely conveying Program.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_13-remote-network-interaction-use-with-the-gnu-general-public-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"13. Remote Network Interaction; Use with the GNU General Public License.","title":"GNU Affero General Public License","text":"Notwithstanding provision License, modify Program, modified version must prominently offer users interacting remotely computer network (version supports interaction) opportunity receive Corresponding Source version providing access Corresponding Source network server charge, standard customary means facilitating copying software. Corresponding Source shall include Corresponding Source work covered version 3 GNU General Public License incorporated pursuant following paragraph. Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU General Public License single combined work, convey resulting work. terms License continue apply part covered work, work combined remain governed version 3 GNU General Public License.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License.","title":"GNU Affero General Public License","text":"Free Software Foundation may publish revised /new versions GNU Affero General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":" Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see ."},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set also available, collection questions answers project use FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"how-do-i-merge-multiple-datasets","dir":"","previous_headings":"","what":"How do I merge multiple datasets?","title":"Questions and answers","text":"can merge multiple sheets ods xls(x) files import common key variable present selected sheets. Multiple file upload/merge currently supported.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, lot things still changing. , however, usable state, basic functions available user. (actual list quite long growing) planned features improvements: Stratified analyses Additional study designs: Cross-sectional data analyses Longitudinal data analyses Survival analysis detailed variable browser Add histograms data distribution. 2025-01-16 Option edit labels. 2025-01-16 output controls Theming output tables Select analyses include report Export modified data. 2025-01-16 Include reproducible code steps (maybe , steps, final dataset can exported) Modify factor levels Factor level modifications possible converting factors numeric > cutting numeric desired fixed values. 2024-12-12 options date/datetime/time grouping/factoring. Included weekday month-options. 2024-12-12 Graphs plots Correlation matrix plot data exploration 2025-2-20 Grotta bars ordianl outcomes (sankey) 2025-3-17 Coefficient plotting regression analyses (forest plot) 2025-2-20","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"getting-started-with-freesearchr","dir":"Articles","previous_headings":"","what":"Getting started with FreesearchR","title":"FreesearchR","text":"simple walk-trough basic instructions functions FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"launching","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Launching","title":"FreesearchR","text":"easiest way get started launch hosted version app shinyapps.io (click link). Additionally option run app locally access data current working environment. , open R (RStudio similar), run following code install latest version FreesearchR launch app: small note, standalone Windows app version drawing board well, time frame available.","code":"require(\"pak\") pak::pak(\"agdamsbo/FreesearchR\") library(FreesearchR) FreesearchR::launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"importing-data","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Importing data","title":"FreesearchR","text":"app “Import”, three options available importing data: file upload, REDCap server export local sample data. choosing data source, can set threshold filter data completenes manually specify variables include analyses.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"file-upload","dir":"Articles","previous_headings":"Getting started with FreesearchR > Importing data","what":"File upload","title":"FreesearchR","text":"Currently several data file formats supported easy import (csv, txt, xls(x), ods, rds, dta). importing workbooks (xls(x) ods), prompted specify sheet(s) import. choosing multiple sheets, automatically merged common variable(s), please make sure key variables correctly named identically.","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"visualise","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Visualise","title":"FreesearchR","text":"nice table possible plots, description data options","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2025). FreesearchR: Browser Based Data Analysis. R package version 25.4.1, https://agdamsbo.github.io/FreesearchR/, https://github.com/agdamsbo/FreesearchR.","code":"@Manual{, title = {FreesearchR: Browser Based Data Analysis}, author = {Andreas Gammelgaard Damsbo}, year = {2025}, note = {R package version 25.4.1, https://agdamsbo.github.io/FreesearchR/}, url = {https://github.com/agdamsbo/FreesearchR}, }"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"freesearchr","dir":"","previous_headings":"","what":"Browser Based Data Analysis","title":"Browser Based Data Analysis","text":"package backbone FreesearchR, free open-source browser based data exploration analysis tool clinicians researchers publication ready output. package FreesearchR-tool part larger initiative democratize health data analysis remove barriers clinicians engage health research. FreesearchR-tool online accessible : link app freely hosted shinyapps.io. feedback welcome can shared GitHub issue. Initiatives funding continued development tool surrounding initiatives ongoing.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"install-locally","dir":"","previous_headings":"","what":"Install locally","title":"Browser Based Data Analysis","text":"FreesearchR-tool can also launched locally. data.frame available global environment accessible interface.","code":"require(\"devtools\") devtools::install_github(\"agdamsbo/FreesearchR\") library(FreesearchR) # By loading mtcars to the environment, it will be available # in the interface like any other data.frame data(mtcars) launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Browser Based Data Analysis","text":"Please note FreesearchR project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |> overview_vars() |> toastui::datagrid() |> add_class_icon() {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[6,6,4,6,8,6,8,4,4,6,6,8,8,8,8,8,8,4,4,4,4,8,8,8,8,4,4,4,8,6,8,4],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[0,0,1,1,0,1,0,1,1,1,1,0,0,0,0,0,0,1,1,1,1,0,0,0,0,1,0,1,0,0,0,1],[1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,1,1,1,1,1,1,1],[4,4,4,3,3,3,3,4,4,4,4,3,3,3,3,3,3,4,4,4,3,3,3,3,3,4,5,5,5,5,5,4],[4,4,1,1,2,1,4,2,2,4,4,3,3,3,4,4,4,1,2,1,1,2,2,4,2,1,2,2,4,6,8,2]]],\"colnames\":[\"class\",\"type\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.format\",\"options\":{\"formatted\":[\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\"]}},\"width\":60},{\"header\":\"type\",\"name\":\"type\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}}],\"bodyHeight\":\"fitToParent\",\"draggable\":false,\"usageStatistics\":false,\"contextMenu\":null,\"rowHeight\":\"auto\"},\"theme\":\"clean\",\"themeOptions\":{\"cell\":{\"normal\":{\"showHorizontalBorder\":true}}},\"language\":\"en\",\"languageOptions\":[],\"filters\":false,\"rowAttributes\":[],\"validationInput\":false,\"dataAsInput\":false,\"dragInput\":false},\"evals\":[\"options.columns.0.renderer.type\"],\"jsHooks\":[]}"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":null,"dir":"Reference","previous_headings":"","what":"Add sparkline to datagrid — add_sparkline","title":"Add sparkline to datagrid — add_sparkline","text":"Add sparkline datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"add_sparkline( grid, column = \"vals\", color.main = \"#2a8484\", color.sec = \"#84EF84\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add sparkline to datagrid — add_sparkline","text":"grid grid column clumn transform","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add sparkline to datagrid — add_sparkline","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"grid <- mtcars |> default_parsing() |> overview_vars() |> toastui::datagrid() |> add_sparkline() grid 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<\\/div>\\n