new renders

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: FreesearchR
 Title: Easy data analysis for clinicians
-Version: 26.4.2
+Version: 26.5.1
 Authors@R: c(
     person("Andreas Gammelgaard", "Damsbo",email="agdamsbo@clin.au.dk", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-7559-1154")),
@@ -118,6 +118,7 @@ Collate:
     'launch_FreesearchR.R'
     'missings-module.R'
     'plot-download-module.R'
+    'plot-helpers.R'
     'plot_bar.R'
     'plot_box.R'
     'plot_euler.R'

NAMESPACE

@@ -16,6 +16,7 @@ export(append_column)
 export(append_list)
 export(apply_labels)
 export(argsstring2list)
+export(available_plots)
 export(baseline_table)
 export(class_icons)
 export(clean_common_axis)
@@ -64,6 +65,7 @@ export(format_writer)
 export(generate_colors)
 export(get_data_packages)
 export(get_fun_options)
+export(get_input_params)
 export(get_label)
 export(get_list_elements)
 export(get_plot_options)

NEWS.md

@@ -1,3 +1,7 @@
+# FreesearchR 26.5.1
+
+*NEW* The visuals module has been restructured to allow for more advanced inputs, which will be added in the future. Basically a more future proof design allowing for more adjustments, while striving to keep the simplicity. Have fun!
+
 # FreesearchR 26.4.2
 
 Bug fixes and revised color choices.

R/hosted_version.R

@@ -1 +1 @@
-hosted_version <- function()'v26.4.2-260528'
+hosted_version <- function()'v26.4.2-260530'

R/plot_hbar.R

@@ -76,7 +76,7 @@ vertical_stacked_bars <- function(data,
 
   colors <- generate_colors(n = nrow(df.table), palette = color.palette)
   ## Colors are reversed by default as that usually gives the best result
-  if (isTRUE(reverse)) {
+  if (isTRUE(reverse) | reverse=="TRUE") {
     colors <- rev(colors)
   }
 

inst/translations/translation_da.csv

@@ -89,7 +89,6 @@
 "and","og"
 "from each pair","fra hvert par"
 "Plot","Tegn"
-"Adjust settings, then press ""Plot"".","Juster indstillingerne og tryk så ""Tegn""."
 "Plot height (mm)","Højde af grafik (mm)"
 "Plot width (mm)","Bredde af grafik (mm)"
 "File format","File format"
@@ -97,12 +96,7 @@
 "Select variable","Vælg variabel"
 "Response variable","Svarvariable"
 "Plot type","Type af grafik"
-"Please select","Vælg"
-"Additional variables","Yderligere variabler"
-"Secondary variable","Sekundær variabel"
 "No variable","Ingen variabel"
-"Grouping variable","Variabel til gruppering"
-"No stratification","Ingen stratificering"
 "Drawing the plot. Hold tight for a moment..","Tegner grafikken. Spænd selen.."
 "#Plotting\n","#Tegner\n"
 "Stacked horizontal bars","Stablede horisontale søjler"
@@ -310,7 +304,6 @@
 "Sample data","Sample data"
 "Settings","Settings"
 "Create new factor","Create new factor"
-"Choose color palette","Choose color palette"
 "Optional filter logic (e.g., ⁠[gender] = 'female')","Optional filter logic (e.g., ⁠[gender] = 'female')"
 "Drop empty","Drop empty"
 "Choose variable:","Choose variable:"

inst/translations/translation_sw.csv

@@ -89,7 +89,6 @@
 "and","na"
 "from each pair","kutoka kwa kila jozi"
 "Plot","Kipande cha habari"
-"Adjust settings, then press ""Plot"".","Rekebisha mipangilio, kisha bonyeza ""Plot""."
 "Plot height (mm)","Urefu wa kiwanja (mm)"
 "Plot width (mm)","Upana wa kiwanja (mm)"
 "File format","Umbizo la faili"
@@ -97,12 +96,7 @@
 "Select variable","Chagua kigezo"
 "Response variable","Kigezo cha majibu"
 "Plot type","Aina ya kiwanja"
-"Please select","Tafadhali chagua"
-"Additional variables","Vigezo vya ziada"
-"Secondary variable","Kigezo cha pili"
 "No variable","Hakuna kigezo"
-"Grouping variable","Kigezo cha kuweka katika makundi"
-"No stratification","Hakuna matabaka"
 "Drawing the plot. Hold tight for a moment..","Kuchora njama. Shikilia kwa muda.."
 "#Plotting\n","#Upangaji\n"
 "Stacked horizontal bars","Pau za mlalo zilizopangwa kwa mpangilio"
@@ -310,7 +304,6 @@
 "Sample data","Sample data"
 "Settings","Settings"
 "Create new factor","Create new factor"
-"Choose color palette","Choose color palette"
 "Optional filter logic (e.g., ⁠[gender] = 'female')","Optional filter logic (e.g., ⁠[gender] = 'female')"
 "Drop empty","Drop empty"
 "Choose variable:","Choose variable:"

man/align_axes.Rd

@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{align_axes}
 \alias{align_axes}
 \title{Aligns axes between plots}

man/all_but.Rd

@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{all_but}
 \alias{all_but}
 \title{Select all from vector but}

man/available_plots.Rd

@@ -0,0 +1,27 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/plot-helpers.R
+\name{available_plots}
+\alias{available_plots}
+\title{Implemented functions}
+\usage{
+available_plots()
+}
+\value{
+list
+}
+\description{
+Library of supported functions. The list name and "descr" element should be
+unique for each element on list.
+\itemize{
+\item fun: the plotting function
+\item fun.args: default parameters for the plotting function
+\item descr: Plot description
+\item note: Short note/description of the function for displaying in ui and docs
+\item primary.type: Primary variable data type (see \link{data_type})
+\item base: holds a list of parameters for plot input fields generation
+Secondary and tertiary variable input fields are mandatory.
+}
+}
+\examples{
+available_plots() |> str()
+}

man/clean_common_axis.Rd

@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{clean_common_axis}
 \alias{clean_common_axis}
 \title{Extract and clean axis ranges}

man/data-plots.Rd

@@ -1,7 +1,7 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R, R/plot_bar.R, R/plot_box.R,
+% Please edit documentation in R/data_plots.R, R/plot-helpers.R, R/plot_bar.R,
-%   R/plot_hbar.R, R/plot_likert.R, R/plot_ridge.R, R/plot_sankey.R,
+%   R/plot_box.R, R/plot_hbar.R, R/plot_likert.R, R/plot_ridge.R,
-%   R/plot_scatter.R, R/plot_violin.R
+%   R/plot_sankey.R, R/plot_scatter.R, R/plot_violin.R
 \name{data-plots}
 \alias{data-plots}
 \alias{data_visuals_ui}
@@ -22,7 +22,7 @@
 \usage{
 data_visuals_ui(id, tab_title = "Plots", ...)
 
-data_visuals_server(id, data, palettes, ...)
+data_visuals_server(id, data, palettes = color_choices(), ...)
 
 create_plot(data, type, pri, sec, ter = NULL, color.palette = "viridis", ...)
 
@@ -50,9 +50,9 @@ plot_box(data, pri, sec, ter = NULL, color.palette = "viridis", ...)
 
 plot_box_single(data, pri, sec = NULL, seed = 2103, color.palette = "viridis")
 
-plot_hbars(data, pri, sec, ter = NULL, color.palette = "viridis")
+plot_hbars(data, pri, sec, ter = NULL, color.palette = "viridis", ...)
 
-plot_likert(data, pri, sec = NULL, ter = NULL, color.palette = "viridis")
+plot_likert(data, pri, sec = NULL, ter = NULL, color.palette = "viridis", ...)
 
 plot_ridge(data, x, y, z = NULL, color.palette = "viridis", ...)
 
@@ -69,12 +69,13 @@ plot_sankey(
   default.color = "#2986cc",
   box.color = "#1E4B66",
   na.color = "grey80",
-  missing.level = "Missing"
+  missing.level = "Missing",
+  ...
 )
 
-plot_scatter(data, pri, sec, ter = NULL, color.palette = "viridis")
+plot_scatter(data, pri, sec, ter = NULL, color.palette = "viridis", ...)
 
-plot_violin(data, pri, sec, ter = NULL, color.palette = "viridis")
+plot_violin(data, pri, sec, ter = NULL, color.palette = "viridis", ...)
 }
 \arguments{
 \item{id}{Module id. (Use 'ns("id")')}

man/get_input_params.Rd

@@ -0,0 +1,27 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/plot-helpers.R
+\name{get_input_params}
+\alias{get_input_params}
+\title{Get the function parameters based on the selected function description}
+\usage{
+get_input_params(data)
+}
+\arguments{
+\item{data}{vector}
+}
+\value{
+list
+}
+\description{
+Get the function parameters based on the selected function description
+}
+\examples{
+ls <- mtcars |>
+  default_parsing() |>
+  dplyr::pull(mpg) |>
+  possible_plots() |>
+  (\(.x){
+    .x[[1]]
+  })() |>
+  get_input_params()
+}

man/get_label.Rd

@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{get_label}
 \alias{get_label}
 \title{Print label, and if missing print variable name for plots}

man/get_plot_options.Rd

@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{get_plot_options}
 \alias{get_plot_options}
 \title{Get the function options based on the selected function description}

man/line_break.Rd

@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{line_break}
 \alias{line_break}
 \title{Line breaking at given number of characters for nicely plotting labels}

man/plot_euler_single.Rd

@@ -4,7 +4,7 @@
 \alias{plot_euler_single}
 \title{Easily plot single euler diagrams}
 \usage{
-plot_euler_single(data, color.palette = "viridis")
+plot_euler_single(data, color.palette = "viridis", ...)
 }
 \value{
 ggplot2 object

man/possible_plots.Rd

@@ -1,10 +1,10 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{possible_plots}
 \alias{possible_plots}
 \title{Get possible regression models}
 \usage{
-possible_plots(data)
+possible_plots(data, source_list = supported_plots())
 }
 \arguments{
 \item{data}{data}

man/selectPlotVariables.Rd

@@ -0,0 +1,11 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/plot-helpers.R
+\name{selectPlotVariables}
+\alias{selectPlotVariables}
+\title{Wrapper for columnSelectInput}
+\usage{
+selectPlotVariables(data, exclude = NULL, allow_none = TRUE, var_types, ...)
+}
+\description{
+Wrapper for columnSelectInput
+}

man/subset_types.Rd

@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{subset_types}
 \alias{subset_types}
 \title{Easily subset by data type function}

man/supported_plots.Rd

@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{supported_plots}
 \alias{supported_plots}
 \title{Implemented functions}

man/wrap_plot_list.Rd

@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data_plots.R
+% Please edit documentation in R/plot-helpers.R
 \name{wrap_plot_list}
 \alias{wrap_plot_list}
 \title{Wrapping}