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Andreas Gammelgaard Damsbo 2025-04-29 12:11:38 +02:00
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2
R/app_version.R
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@ -1 +1 @@
app_version <- function()'v25.4.4.250428'
app_version <- function()'v25.4.4.250429'

3
R/launch_FreesearchR.R
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@ -11,7 +11,7 @@
#' @examples
#' \dontrun{
#' data(mtcars)
#' shiny_FreesearchR(launch.browser = TRUE)
#' launch_FreesearchR(launch.browser = TRUE)
#' }
launch_FreesearchR <- function(...){
appDir <- system.file("apps", "FreesearchR", package = "FreesearchR")
@ -22,3 +22,4 @@ launch_FreesearchR <- function(...){
a <- shiny::runApp(appDir = paste0(appDir,"/app.R"), ...)
return(invisible(a))
}

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README.md
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@ -53,4 +53,6 @@ Like any other project, this project was never possible without the great work o
- [easystats](https://easystats.github.io/easystats/): the [`performance::check_model()`](https://easystats.github.io/performance/articles/check_model.html) function was central in sparking the idea to create a data analysis tool.
- [IDEAfilter](https://biogen-inc.github.io/IDEAFilter/): a visually appealing data filter function based on the [{shinyDataFilter}](https://github.com/dgkf/shinyDataFilter).
This project was all written by a human and not by any AI-based tools.

42
SESSION.md
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@ -11,78 +11,49 @@
|collate |en_US.UTF-8 |
|ctype |en_US.UTF-8 |
|tz |Europe/Copenhagen |
|date |2025-04-28 |
|date |2025-04-29 |
|rstudio |2024.12.1+563 Kousa Dogwood (desktop) |
|pandoc |3.6.4 @ /opt/homebrew/bin/pandoc |
|quarto |1.6.40 @ /usr/local/bin/quarto |
|FreesearchR |25.4.4.250428 |
|FreesearchR |25.4.4.250429 |
--------------------------------------------------------------------------------
----------------------------------- packages -----------------------------------
--------------------------------------------------------------------------------
|package |loadedversion |date |source |
|:-------------|:-------------|:----------|:--------------|
|askpass |1.2.1 |2024-10-04 |CRAN (R 4.4.1) |
|assertthat |0.2.1 |2019-03-21 |CRAN (R 4.4.1) |
|:-----------|:-------------|:----------|:--------------|
|bit |4.6.0 |2025-03-06 |CRAN (R 4.4.1) |
|bit64 |4.6.0-1 |2025-01-16 |CRAN (R 4.4.1) |
|bslib |0.9.0 |2025-01-30 |CRAN (R 4.4.1) |
|cachem |1.1.0 |2024-05-16 |CRAN (R 4.4.1) |
|cffr |1.2.0 |2025-01-25 |CRAN (R 4.4.1) |
|class |7.3-23 |2025-01-01 |CRAN (R 4.4.1) |
|classInt |0.4-11 |2025-01-08 |CRAN (R 4.4.1) |
|cli |3.6.5 |2025-04-23 |CRAN (R 4.4.1) |
|crayon |1.5.3 |2024-06-20 |CRAN (R 4.4.1) |
|credentials |2.0.2 |2024-10-04 |CRAN (R 4.4.1) |
|curl |6.2.2 |2025-03-24 |CRAN (R 4.4.1) |
|data.table |1.17.0 |2025-02-22 |CRAN (R 4.4.1) |
|desc |1.4.3 |2023-12-10 |CRAN (R 4.4.1) |
|devtools |2.4.5 |2022-10-11 |CRAN (R 4.4.0) |
|digest |0.6.37 |2024-08-19 |CRAN (R 4.4.1) |
|dplyr |1.1.4 |2023-11-17 |CRAN (R 4.4.0) |
|e1071 |1.7-16 |2024-09-16 |CRAN (R 4.4.1) |
|ellipsis |0.3.2 |2021-04-29 |CRAN (R 4.4.1) |
|evaluate |1.0.3 |2025-01-10 |CRAN (R 4.4.1) |
|fastmap |1.2.0 |2024-05-15 |CRAN (R 4.4.1) |
|FreesearchR |25.4.4 |NA |NA |
|fs |1.6.6 |2025-04-12 |CRAN (R 4.4.1) |
|generics |0.1.3 |2022-07-05 |CRAN (R 4.4.1) |
|gert |2.1.5 |2025-03-25 |CRAN (R 4.4.1) |
|gh |1.4.1 |2024-03-28 |CRAN (R 4.4.0) |
|gitcreds |0.1.2 |2022-09-08 |CRAN (R 4.4.1) |
|glue |1.8.0 |2024-09-30 |CRAN (R 4.4.1) |
|here |1.0.1 |2020-12-13 |CRAN (R 4.4.1) |
|hms |1.1.3 |2023-03-21 |CRAN (R 4.4.0) |
|htmltools |0.5.8.1 |2024-04-04 |CRAN (R 4.4.1) |
|htmlwidgets |1.6.4 |2023-12-06 |CRAN (R 4.4.0) |
|httpuv |1.6.16 |2025-04-16 |CRAN (R 4.4.1) |
|httr2 |1.1.2 |2025-03-26 |CRAN (R 4.4.1) |
|jquerylib |0.1.4 |2021-04-26 |CRAN (R 4.4.0) |
|jsonlite |2.0.0 |2025-03-27 |CRAN (R 4.4.1) |
|jsonvalidate |1.5.0 |2025-02-07 |CRAN (R 4.4.1) |
|KernSmooth |2.23-26 |2025-01-01 |CRAN (R 4.4.1) |
|keyring |1.3.2 |2023-12-11 |CRAN (R 4.4.0) |
|knitr |1.50 |2025-03-16 |CRAN (R 4.4.1) |
|later |1.4.2 |2025-04-08 |CRAN (R 4.4.1) |
|lifecycle |1.0.4 |2023-11-07 |CRAN (R 4.4.1) |
|magrittr |2.0.3 |2022-03-30 |CRAN (R 4.4.1) |
|memoise |2.0.1 |2021-11-26 |CRAN (R 4.4.0) |
|mime |0.13 |2025-03-17 |CRAN (R 4.4.1) |
|miniUI |0.1.2 |2025-04-17 |CRAN (R 4.4.1) |
|openssl |2.3.2 |2025-02-03 |CRAN (R 4.4.1) |
|pak |0.8.0.2 |2025-04-08 |CRAN (R 4.4.1) |
|phosphoricons |0.2.1 |2024-04-08 |CRAN (R 4.4.0) |
|pillar |1.10.2 |2025-04-05 |CRAN (R 4.4.1) |
|pkgbuild |1.4.7 |2025-03-24 |CRAN (R 4.4.1) |
|pkgconfig |2.0.3 |2019-09-22 |CRAN (R 4.4.1) |
|pkgload |1.4.0 |2024-06-28 |CRAN (R 4.4.0) |
|profvis |0.4.0 |2024-09-20 |CRAN (R 4.4.1) |
|promises |1.3.2 |2024-11-28 |CRAN (R 4.4.1) |
|proxy |0.4-27 |2022-06-09 |CRAN (R 4.4.1) |
|purrr |1.0.4 |2025-02-05 |CRAN (R 4.4.1) |
|R6 |2.6.1 |2025-02-15 |CRAN (R 4.4.1) |
|rappdirs |0.3.3 |2021-01-31 |CRAN (R 4.4.1) |
|Rcpp |1.0.14 |2025-01-12 |CRAN (R 4.4.1) |
|readr |2.1.5 |2024-01-10 |CRAN (R 4.4.0) |
|remotes |2.5.0 |2024-03-17 |CRAN (R 4.4.1) |
@ -91,21 +62,14 @@
|rprojroot |2.0.4 |2023-11-05 |CRAN (R 4.4.1) |
|rsconnect |1.3.4 |2025-01-22 |CRAN (R 4.4.1) |
|rstudioapi |0.17.1 |2024-10-22 |CRAN (R 4.4.1) |
|sass |0.4.10 |2025-04-11 |CRAN (R 4.4.1) |
|sessioninfo |1.2.3 |2025-02-05 |CRAN (R 4.4.1) |
|shiny |1.10.0 |2024-12-14 |CRAN (R 4.4.1) |
|shinyWidgets |0.9.0 |2025-02-21 |CRAN (R 4.4.1) |
|sys |3.4.3 |2024-10-04 |CRAN (R 4.4.1) |
|tibble |3.2.1 |2023-03-20 |CRAN (R 4.4.0) |
|tidyselect |1.2.1 |2024-03-11 |CRAN (R 4.4.0) |
|toastui |0.4.0 |2025-04-03 |CRAN (R 4.4.1) |
|tzdb |0.5.0 |2025-03-15 |CRAN (R 4.4.1) |
|urlchecker |1.0.1 |2021-11-30 |CRAN (R 4.4.1) |
|usethis |3.1.0 |2024-11-26 |CRAN (R 4.4.1) |
|V8 |6.0.3 |2025-03-26 |CRAN (R 4.4.1) |
|vctrs |0.6.5 |2023-12-01 |CRAN (R 4.4.0) |
|vroom |1.6.5 |2023-12-05 |CRAN (R 4.4.0) |
|withr |3.0.2 |2024-10-28 |CRAN (R 4.4.1) |
|xfun |0.52 |2025-04-02 |CRAN (R 4.4.1) |
|xtable |1.8-4 |2019-04-21 |CRAN (R 4.4.1) |
|yaml |2.3.10 |2024-07-26 |CRAN (R 4.4.1) |

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6
inst/apps/FreesearchR/app.R
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@ -10,7 +10,7 @@
#### Current file: /Users/au301842/FreesearchR/R//app_version.R
########
app_version <- function()'v25.4.4.250428'
app_version <- function()'v25.4.4.250429'
########
@ -4553,7 +4553,7 @@ import_file_demo_app <- function() {
#' @examples
#' \dontrun{
#' data(mtcars)
#' shiny_FreesearchR(launch.browser = TRUE)
#' launch_FreesearchR(launch.browser = TRUE)
#' }
launch_FreesearchR <- function(...){
appDir <- system.file("apps", "FreesearchR", package = "FreesearchR")
@ -4566,6 +4566,7 @@ launch_FreesearchR <- function(...){
}
########
#### Current file: /Users/au301842/FreesearchR/R//plot_box.R
########
@ -10098,6 +10099,7 @@ server <- function(input, output, session) {
######### Data filter
# IDEAFilter has the least cluttered UI, but might have a License issue
# Consider using shinyDataFilter, though not on CRAN
data_filter <- IDEAFilter::IDEAFilter("data_filter",
data = shiny::reactive(rv$data_variables),
verbose = TRUE

2
inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/FreesearchR.dcf
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@ -5,6 +5,6 @@ account: agdamsbo
server: shinyapps.io
hostUrl: https://api.shinyapps.io/v1
appId: 14600805
bundleId: 10191506
bundleId: 10198630
url: https://agdamsbo.shinyapps.io/FreesearchR/
version: 1

1
inst/apps/FreesearchR/server.R
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@ -383,6 +383,7 @@ server <- function(input, output, session) {
######### Data filter
# IDEAFilter has the least cluttered UI, but might have a License issue
# Consider using shinyDataFilter, though not on CRAN
data_filter <- IDEAFilter::IDEAFilter("data_filter",
data = shiny::reactive(rv$data_variables),
verbose = TRUE

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inst/apps/FreesearchR/www/intro.md
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@ -4,7 +4,7 @@ This is the ***FreesearchR*** data analysis tool. We intend the ***FreesearchR**
By intention, this tool has been designed to be simple to use with a minimum of mandatory options to keep the workflow streamlined, while also including a few options to go even further.
There are some simple steps to go through (see corresponding tabs in the top):
Here is a brief summary of the functions:
1. Import data to get started. This can be a spreadsheet/file on your machine, direct export from a REDCap server, sample data or data from a your local environment if run locally.
@ -30,4 +30,4 @@ There are some simple steps to go through (see corresponding tabs in the top):
- Code to recreate all steps locally
The full [project documentation is here](https://agdamsbo.github.io/FreesearchR/) and all code used is [freely available to read, copy, modify and improve](https://github.com/agdamsbo/FreesearchR) under an [open source license](https://github.com/agdamsbo/FreesearchR/blob/main/LICENSE.md)! Contributions are welcome and much appreciated and can be reporting issues, suggesting new functionality, improving code or any other feedback [here](https://github.com/agdamsbo/FreesearchR/issues).
The full [project documentation is here](https://agdamsbo.github.io/FreesearchR/) where you'll find detailed description of the app and link to the source code! If you want to [share feedback, please follow this link to a simple survey](https://redcap.au.dk/surveys/?s=JPCLPTXYDKFA8DA8), or share on [GitHub](https://github.com/agdamsbo/FreesearchR/issues).

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man/launch_FreesearchR.Rd
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@ -18,6 +18,6 @@ All data.frames in the global environment will be accessible through the app.
\examples{
\dontrun{
data(mtcars)
shiny_FreesearchR(launch.browser = TRUE)
launch_FreesearchR(launch.browser = TRUE)
}
}

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pkgdown/favicon/site.webmanifest Executable file
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@ -0,0 +1,21 @@
{
"name": "FreesearchR",
"short_name": "FreesearchR",
"icons": [
{
"src": "/FreesearchR/web-app-manifest-192x192.png",
"sizes": "192x192",
"type": "image/png",
"purpose": "maskable"
},
{
"src": "/FreesearchR/web-app-manifest-512x512.png",
"sizes": "512x512",
"type": "image/png",
"purpose": "maskable"
}
],
"theme_color": "#ffffff",
"background_color": "#ffffff",
"display": "standalone"
}

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renv.lock
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@ -5406,31 +5406,6 @@
"Author": "Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>), Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>), Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>), Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>), Rémi Thériault [aut] (<https://orcid.org/0000-0003-4315-6788>)",
"Repository": "CRAN"
},
"munsell": {
"Package": "munsell",
"Version": "0.5.1",
"Source": "Repository",
"Type": "Package",
"Title": "Utilities for Using Munsell Colours",
"Author": "Charlotte Wickham <cwickham@gmail.com>",
"Maintainer": "Charlotte Wickham <cwickham@gmail.com>",
"Description": "Provides easy access to, and manipulation of, the Munsell colours. Provides a mapping between Munsell's original notation (e.g. \"5R 5/10\") and hexadecimal strings suitable for use directly in R graphics. Also provides utilities to explore slices through the Munsell colour tree, to transform Munsell colours and display colour palettes.",
"Suggests": [
"ggplot2",
"testthat"
],
"Imports": [
"colorspace",
"methods"
],
"License": "MIT + file LICENSE",
"URL": "https://cran.r-project.org/package=munsell, https://github.com/cwickham/munsell/",
"RoxygenNote": "7.3.1",
"Encoding": "UTF-8",
"BugReports": "https://github.com/cwickham/munsell/issues",
"NeedsCompilation": "no",
"Repository": "CRAN"
},
"nlme": {
"Package": "nlme",
"Version": "3.1-168",
@ -7662,16 +7637,16 @@
},
"scales": {
"Package": "scales",
"Version": "1.3.0",
"Version": "1.4.0",
"Source": "Repository",
"Title": "Scale Functions for Visualization",
"Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
"Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
"Description": "Graphical scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends.",
"License": "MIT + file LICENSE",
"URL": "https://scales.r-lib.org, https://github.com/r-lib/scales",
"BugReports": "https://github.com/r-lib/scales/issues",
"Depends": [
"R (>= 3.6)"
"R (>= 4.1)"
],
"Imports": [
"cli",
@ -7679,10 +7654,9 @@
"glue",
"labeling",
"lifecycle",
"munsell (>= 0.5)",
"R6",
"RColorBrewer",
"rlang (>= 1.0.0)",
"rlang (>= 1.1.0)",
"viridisLite"
],
"Suggests": [
@ -7696,11 +7670,12 @@
],
"Config/Needs/website": "tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Config/usethis/last-upkeep": "2025-04-23",
"Encoding": "UTF-8",
"LazyLoad": "yes",
"RoxygenNote": "7.2.3",
"NeedsCompilation": "yes",
"Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit, PBC [cph, fnd]",
"RoxygenNote": "7.3.2",
"NeedsCompilation": "no",
"Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)",
"Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
"Repository": "CRAN"
},