From a5107eab3629008e837d6377a6e53f5e098d32ab Mon Sep 17 00:00:00 2001 From: agdamsbo <43278243+agdamsbo@users.noreply.github.com> Date: Mon, 12 May 2025 11:15:41 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20agdamsbo?= =?UTF-8?q?/FreesearchR@a82a5c6378589e0d1c89cf3ae4d47d49d3ffe880=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- pkgdown.yml | 2 +- reference/getfun.html | 2 +- reference/index.html | 6 ++ reference/regression_table_create.html | 107 +++++++++++++++++++++++++ search.json | 2 +- sitemap.xml | 1 + 6 files changed, 117 insertions(+), 3 deletions(-) create mode 100644 reference/regression_table_create.html diff --git a/pkgdown.yml b/pkgdown.yml index fd82102..9c95013 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -6,7 +6,7 @@ articles: FreesearchR: FreesearchR.html session: session.html visuals: visuals.html -last_built: 2025-05-12T10:02Z +last_built: 2025-05-12T11:14Z urls: reference: https://agdamsbo.github.io/FreesearchR/reference article: https://agdamsbo.github.io/FreesearchR/articles diff --git a/reference/getfun.html b/reference/getfun.html index 48cabf3..2ef1ad3 100644 --- a/reference/getfun.html +++ b/reference/getfun.html @@ -138,7 +138,7 @@ #> z$qr <- NULL #> z #> } -#> <bytecode: 0x562cc0c303c0> +#> <bytecode: 0x558929740180> #> <environment: namespace:stats> diff --git a/reference/index.html b/reference/index.html index 1e1cb85..59b0e70 100644 --- a/reference/index.html +++ b/reference/index.html @@ -502,6 +502,12 @@
Create table of regression model
+ regression_table_create() + +
+
Create regression summary table
+
+ remove_empty_attr()
diff --git a/reference/regression_table_create.html b/reference/regression_table_create.html new file mode 100644 index 0000000..d7b59f7 --- /dev/null +++ b/reference/regression_table_create.html @@ -0,0 +1,107 @@ + +Create regression summary table — regression_table_create • FreesearchR + Skip to contents + + +
+
+
+

Create regression summary table

+ Source: R/regression_table.R +
regression_table_create.Rd
+
+ +
+

Create regression summary table

+
+ +
+

Usage

+ 
regression_table_create(
+  x,
+  ...,
+  args.list = NULL,
+  fun = "gtsummary::tbl_regression",
+  theme = c("jama", "lancet", "nejm", "qjecon")
+)
+
+ +
+

Arguments

+ + +
x
+

(list of) regression model

+ + +
...
+

ignored for now

+ + +
args.list
+

args.list for the summary function

+ + +
fun
+

table summary function. Default is "gtsummary::tbl_regression"

+ + +
theme
+

summary table theme

+ +
+
+

Value

+

gtsummary list object

+
+ +
+ + +
+

Site built with pkgdown 2.1.2.

+
+ +
+

Developed by Andreas Gammelgaard Damsbo. Provided without any warranty.

+
+ +
+ + + + + + + diff --git a/search.json b/search.json index c027f89..652044d 100644 --- a/search.json +++ b/search.json @@ -1 +1 @@ -[{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. 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Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. 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GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. 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License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. 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Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. 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Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. 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Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":" Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see ."},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set also available, collection questions answers project use FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"how-do-i-merge-multiple-datasets","dir":"","previous_headings":"","what":"How do I merge multiple datasets?","title":"Questions and answers","text":"can merge multiple sheets ods xls(x) files import common key variable present selected sheets. Multiple file upload/merge currently supported.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, however, version 25.4.2, FreesearchR app considered functional can used data evaluation analyses. (actual list quite long growing) planned new features improvements:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"implementation-in-real-world-clinical-studies-and-projects","dir":"","previous_headings":"","what":"Implementation in real world clinical studies and projects","title":"Project roadmap","text":"really main goal whole project.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"new-features","dir":"","previous_headings":"","what":"New features:","title":"Project roadmap","text":"Merge data multiple sources (can merge sheets workbook (xls ods), allow merging several files /REDcap data) Additional plot types (bar plots, others…) Missingness analysis panel","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"expanded-options-for-regression-models","dir":"","previous_headings":"","what":"Expanded options for regression models:","title":"Project roadmap","text":"Expansion regression analysis functionality put hold now focus basic use-cases): study designs Cross-sectional data analyses Longitudinal data analyses Survival analysis regression models Stratified analyses Mixed models repeated measures Cox regression analyses Data handling Transforming data (transpose pivoting)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"improved-documentation","dir":"","previous_headings":"","what":"Improved documentation:","title":"Project roadmap","text":"Video walk-central functions","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"getting-started-with-freesearchr","dir":"Articles","previous_headings":"","what":"Getting started with FreesearchR","title":"FreesearchR","text":"simple walk-trough basic instructions functions FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"launching","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Launching","title":"FreesearchR","text":"easiest way get started launch hosted version app shinyapps.io (click link). Additionally option run app locally access data current working environment. , open R (RStudio similar), run following code install latest version FreesearchR launch app: small note, standalone Windows app version drawing board well, time frame available.","code":"require(\"pak\") pak::pak(\"agdamsbo/FreesearchR\") library(FreesearchR) FreesearchR::launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"importing-data","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Importing data","title":"FreesearchR","text":"app “Import”, three options available importing data: file upload, REDCap server export local sample data. choosing data source, can set threshold filter data completenes manually specify variables include analyses.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"file-upload","dir":"Articles","previous_headings":"Getting started with FreesearchR > Importing data","what":"File upload","title":"FreesearchR","text":"Currently several data file formats supported easy import (csv, txt, xls(x), ods, rds, dta). importing workbooks (xls(x) ods), prompted specify sheet(s) import. choosing multiple sheets, automatically merged common variable(s), please make sure key variables correctly named identically. notification posted error success. succesfull import data can previewed directly clicking “click see data” notification.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"redcap-server-export","dir":"Articles","previous_headings":"Getting started with FreesearchR > Importing data","what":"REDCap server export","title":"FreesearchR","text":"Export data directly REDCap server. need first generate API-token (see instruction) REDCap. Make sure necessary rights . Please don’t store API-key device unless encrypted keyring, may compromise data safety. Log REDCap server retrieve token needed. Type correct webaddress REDCap server. module validate information can click “Connect”. unfold options preview data dictionary (main database metadata), choose fields/variables download well filtering options.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"local-or-sample-data","dir":"Articles","previous_headings":"Getting started with FreesearchR > Importing data","what":"Local or sample data","title":"FreesearchR","text":"opening online hosted app, mainly testing purposes. running app locally R computer, find data.frames current environment . extends possible uses app allow quick easy data insights code generation basic plotting fine tune.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"data","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Data","title":"FreesearchR","text":"panel get good overview data, check data classed formatted correctly, perform simple modifications filter data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"summary","dir":"Articles","previous_headings":"Getting started with FreesearchR > Data","what":"Summary","title":"FreesearchR","text":", data variables can inspected simple visualisation key measures. Also, data filtering available two levels: Data type filtering allows filter variable data type Observations level filtering allow filter data variable","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"modify","dir":"Articles","previous_headings":"Getting started with FreesearchR > Data","what":"Modify","title":"FreesearchR","text":"Re-class, rename, relabel variables. Subset data, create new variables reorder factor levels. Also, compare modified dataset original restore original data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"evaluate","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Evaluate","title":"FreesearchR","text":"panel allows basic data evaluation.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"characteristics","dir":"Articles","previous_headings":"Getting started with FreesearchR > Evaluate","what":"Characteristics","title":"FreesearchR","text":"Create classical baseline characteristics table optional data stratification comparisons.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"correlation-matrix","dir":"Articles","previous_headings":"Getting started with FreesearchR > Evaluate","what":"Correlation matrix","title":"FreesearchR","text":"Visualise variable correlations get suggestions exclude highly correlated variables.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"visuals","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Visuals","title":"FreesearchR","text":"number plotting options visualise different aspects data. available plot types listed. Export plots directly sidebar easily adjusted plot dimensions next publication. Also copy code generate plot R-environment fine tune small details.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"regression","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Regression","title":"FreesearchR","text":"section intended simple explorative analyses proof--concept now. complex regression analyses probably just write code . available regression types listed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"table","dir":"Articles","previous_headings":"Getting started with FreesearchR > Regression","what":"Table","title":"FreesearchR","text":"Generate simple regression models get results nice table. also included exported report.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"plots","dir":"Articles","previous_headings":"Getting started with FreesearchR > Regression","what":"Plots","title":"FreesearchR","text":"Plot coefficients regression models forest plot. Choose model(s) include.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"checks","dir":"Articles","previous_headings":"Getting started with FreesearchR > Regression","what":"Checks","title":"FreesearchR","text":"Check model assumptions visually. Supported checks can chosen.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"report","dir":"Articles","previous_headings":"Getting started with FreesearchR > Download","what":"Report","title":"FreesearchR","text":"Download nice report baseline characteristics regression model results. Choose MS Word LibreOffice format.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"data-1","dir":"Articles","previous_headings":"Getting started with FreesearchR > Download","what":"Data","title":"FreesearchR","text":"Export modified dataset different formats.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"code","dir":"Articles","previous_headings":"Getting started with FreesearchR > Download","what":"Code","title":"FreesearchR","text":"See code snippets different steps data evaluation.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/data-types.html","id":"a-clinical-data-class","dir":"Articles","previous_headings":"","what":"A clinical data class","title":"Data types","text":"Traditionally R, data identified classes, like numeric, integer, double, logical, factor etc. classes can little confusing clinical operational standpoint. FreesearchR app, classes simplified modified following data types, assigned prioritised order like following: Categorising data way makes sense making choices evaluate analyse data. used throughout FreesearchR app simplify data handling.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"platform-info","dir":"Articles","previous_headings":"","what":"Platform info","title":"Session info","text":"","code":"FreesearchR:::session_data$platform |> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"libraries","dir":"Articles","previous_headings":"","what":"Libraries","title":"Session info","text":"","code":"FreesearchR:::session_data$libs|> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/visuals.html","id":"basic-visualisations","dir":"Articles","previous_headings":"","what":"Basic visualisations","title":"On visuals","text":"goal FreesearchR keep things simple. Visuals can get complicated. provide selection plots, helps visualise typical clinical enough use cases, publishing journals. want go , look sites suggestions sample code data plotting: R Charts: Extensive gallery great plots R Graph gallery: Another gallery great graphs graphics principles: Easy follow recommendations clear visuals.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/visuals.html","id":"available-plots","dir":"Articles","previous_headings":"Basic visualisations","what":"Available plots","title":"On visuals","text":"available plot types listed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Jutta Mari Adelin Jørgensen. Contributor. Anne Brink Behrndtz. Contributor.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2025). FreesearchR: free open-source browser based data analysis tool researchers publication ready output. R package version 25.5.4, https://github.com/agdamsbo/FreesearchR.","code":"@Manual{, title = {FreesearchR: A free and open-source browser based data analysis tool for researchers with publication ready output}, author = {Andreas Gammelgaard Damsbo}, year = {2025}, note = {R package version 25.5.4}, url = {https://github.com/agdamsbo/FreesearchR}, }"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"freesearchr-","dir":"","previous_headings":"","what":"A free and open-source browser based data analysis tool for researchers with publication ready output","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"FreesearchR simple, clinical health data exploration analysis tool democratise clinical research assisting researcher easily evaluate analyse data export publication ready results. FreesearchR free open-source, accessible web browser link. app can also run locally, please see . feedback welcome can shared GitHub issue. suggestions collaboration much welcomed. Please reach !","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"motivation","dir":"","previous_headings":"","what":"Motivation","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"app following simple goals: help health clinician getting overview data quality improvement projects clinical research help learners get good start analysing data coding R ease quick data overview basic visualisations clinical researcher","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-locally-on-your-own-machine","dir":"","previous_headings":"","what":"Run locally on your own machine","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"FreesearchR app can also run machine data transmitted anywhere. data.frame available global environment accessible interface. Just follow steps: Requirement: need R installed possibly editor like RStudio. open R console copy/paste following code, install devtools package FreesearchR R-package dependencies:","code":"require(\"devtools\") devtools::install_github(\"agdamsbo/FreesearchR\") library(FreesearchR) # By loading mtcars to the environment, it will be available # in the interface like any other data.frame data(mtcars) launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"Please note FreesearchR project published Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"acknowledgements","dir":"","previous_headings":"","what":"Acknowledgements","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"Like project, project never possible without great work others. sources packages used: FreesearchR app build Shiny based R. gtsummary: superb flexible way create publication-ready analytical summary tables. dreamRs: maintainers broad selection great extensions tools Shiny. easystats: performance::check_model() function central sparking idea create data analysis tool. IDEAfilter: visually appealing data filter function based {shinyDataFilter}. project written human AI-based tools. online FreesearchR app contains tracking script, transmitting minimal data usage. uploaded data transmitted anywhere. look tracking data . tracking data sent running app locally (see ).","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\", fun = class_icons)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |> overview_vars() |> toastui::datagrid() |> add_class_icon() {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[6,6,4,6,8,6,8,4,4,6,6,8,8,8,8,8,8,4,4,4,4,8,8,8,8,4,4,4,8,6,8,4],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[0,0,1,1,0,1,0,1,1,1,1,0,0,0,0,0,0,1,1,1,1,0,0,0,0,1,0,1,0,0,0,1],[1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,1,1,1,1,1,1,1],[4,4,4,3,3,3,3,4,4,4,4,3,3,3,3,3,3,4,4,4,3,3,3,3,3,4,5,5,5,5,5,4],[4,4,1,1,2,1,4,2,2,4,4,3,3,3,4,4,4,1,2,1,1,2,2,4,2,1,2,2,4,6,8,2]]],\"colnames\":[\"icon\",\"class\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"icon\",\"name\":\"icon\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.format\",\"options\":{\"formatted\":[\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\"]}},\"width\":60},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}}],\"bodyHeight\":\"fitToParent\",\"draggable\":false,\"usageStatistics\":false,\"contextMenu\":null,\"rowHeight\":\"auto\"},\"theme\":\"clean\",\"themeOptions\":{\"cell\":{\"normal\":{\"showHorizontalBorder\":true}}},\"language\":\"en\",\"languageOptions\":[],\"filters\":false,\"rowAttributes\":[],\"validationInput\":false,\"dataAsInput\":false,\"dragInput\":false},\"evals\":[\"options.columns.1.renderer.type\"],\"jsHooks\":[]}"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":null,"dir":"Reference","previous_headings":"","what":"Add sparkline to datagrid — add_sparkline","title":"Add sparkline to datagrid — add_sparkline","text":"Add sparkline datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"add_sparkline( grid, column = \"vals\", color.main = \"#2a8484\", color.sec = \"#84EF84\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add sparkline to datagrid — add_sparkline","text":"grid grid column clumn transform","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add sparkline to datagrid — add_sparkline","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"grid <- mtcars |> default_parsing() |> overview_vars() |> toastui::datagrid() |> add_sparkline() grid 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<\\/div>\\n