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improved code output

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Andreas Gammelgaard Damsbo 2025-03-17 15:00:13 +01:00
commit 9e8ff6b4a9
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20 changed files with 752 additions and 808 deletions
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31
R/redcap_read_shiny_module.R
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@ -143,7 +143,7 @@ m_redcap_readServer <- function(id) {
dd_list = NULL,
data = NULL,
rep_fields = NULL,
imported = NULL
code = NULL
)
shiny::observeEvent(list(input$api, input$uri), {
@ -340,7 +340,10 @@ m_redcap_readServer <- function(id) {
shiny::withProgress(message = "Downloading REDCap data. Hold on for a moment..", {
imported <- try(rlang::exec(REDCapCAST::read_redcap_tables, !!!parameters), silent = TRUE)
})
code <- rlang::call2(REDCapCAST::read_redcap_tables, !!!parameters)
code <- rlang::call2("read_redcap_tables",
!!!utils::modifyList(parameters,list(token="PERSONAL_API_TOKEN")),
, .ns = "REDCapCAST")
if (inherits(imported, "try-error") || NROW(imported) < 1) {
@ -375,6 +378,8 @@ m_redcap_readServer <- function(id) {
}
}
data_rv$code <- code
data_rv$data <- out |>
dplyr::select(-dplyr::ends_with("_complete")) |>
# dplyr::select(-dplyr::any_of(record_id)) |>
@ -390,7 +395,13 @@ m_redcap_readServer <- function(id) {
#
# })
return(shiny::reactive(data_rv$data))
return(list(
status = shiny::reactive(data_rv$data_status),
name = shiny::reactive(data_rv$info$project_title),
info = shiny::reactive(data_rv$info),
code = shiny::reactive(data_rv$code),
data = shiny::reactive(data_rv$data)
))
}
shiny::moduleServer(
@ -543,15 +554,15 @@ drop_empty_event <- function(data, event = "redcap_event_name") {
redcap_demo_app <- function() {
ui <- shiny::fluidPage(
m_redcap_readUI("data"),
DT::DTOutput("data_summary")
DT::DTOutput("data"),
shiny::tags$b("Code:"),
shiny::verbatimTextOutput(outputId = "code")
)
server <- function(input, output, session) {
data_val <- shiny::reactiveValues(data = NULL)
data_val <- m_redcap_readServer(id = "data")
data_val$data <- m_redcap_readServer(id = "data")
output$data_summary <- DT::renderDataTable(
output$data <- DT::renderDataTable(
{
shiny::req(data_val$data)
data_val$data()
@ -561,6 +572,10 @@ redcap_demo_app <- function() {
pageLength = 5
),
)
output$code <- shiny::renderPrint({
shiny::req(data_val$code)
data_val$code()
})
}
shiny::shinyApp(ui, server)
}