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moved app to correctly include in package and allow load with dataset

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Andreas Gammelgaard Damsbo 2024-11-21 12:34:27 +01:00
commit 8e73992b39
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32 changed files with 5561 additions and 273 deletions
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14
R/regression_model.R
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@ -4,7 +4,7 @@
#' @param fun Name of function as character vector or function to use for model creation.
#' @param vars character vector of variables to include
#' @param outcome.str Name of outcome variable. Character vector.
#' @param auto.mode Make assumptions on function dependent on outcome data format.
#' @param auto.mode Make assumptions on function dependent on outcome data format. Overwrites other arguments.
#' @param formula.str Formula as string. Passed through 'glue::glue'. If given, 'outcome.str' and 'vars' are ignored. Optional.
#' @param args.list List of arguments passed to 'fun' with 'do.call'.
#'
@ -15,16 +15,18 @@
#'
#' @examples
#' gtsummary::trial |>
#' regression_model(outcome.str = "age",)
#' regression_model(outcome.str = "age")
#' gtsummary::trial |>
#' regression_model(
#' outcome.str = "age",
#' auto.mode = FALSE,
#' fun = "stats::lm",
#' formula.str = "{outcome.str}~.",
#' args.list = NULL
#' )
#' gtsummary::trial |> regression_model(
#' outcome.str = "trt",
#' auto.mode = FALSE,
#' fun = "stats::glm",
#' args.list = list(family = binomial(link = "logit"))
#' )
@ -35,8 +37,10 @@ regression_model <- function(data,
args.list = NULL,
fun = NULL,
vars = NULL) {
if (formula.str==""){
formula.str <- NULL
if (!is.null(formula.str)) {
if (formula.str == "") {
formula.str <- NULL
}
}
if (!is.null(formula.str)) {
@ -66,7 +70,7 @@ regression_model <- function(data,
} else if (is.factor(data[[outcome.str]])) {
if (length(levels(data[[outcome.str]])) == 2) {
fun <- "stats::glm"
args.list <- list(family = binomial(link = "logit"))
args.list <- list(family = stats::binomial(link = "logit"))
} else if (length(levels(data[[outcome.str]])) > 2) {
fun <- "MASS::polr"
args.list <- list(