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https://github.com/agdamsbo/FreesearchR.git
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updated feedback links
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parent
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commit
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2 changed files with 73 additions and 43 deletions
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@ -10,7 +10,7 @@
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#### Current file: /Users/au301842/FreesearchR/R//app_version.R
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########
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app_version <- function()'v25.4.4.250430'
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app_version <- function()'25.5.1'
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########
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@ -1619,15 +1619,23 @@ data_visuals_ui <- function(id, tab_title = "Plots", ...) {
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title = "Download",
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icon = bsicons::bs_icon("download"),
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shinyWidgets::noUiSliderInput(
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inputId = ns("height"),
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inputId = ns("height_slide"),
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label = "Plot height (mm)",
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min = 50,
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max = 300,
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value = 100,
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step = 1,
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format = shinyWidgets::wNumbFormat(decimals = 0),
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color = datamods:::get_primary_color()
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color = datamods:::get_primary_color(),
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inline = TRUE
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),
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# shiny::numericInput(
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# inputId = ns("height_numeric"),
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# label = "Plot height (mm)",
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# min = 50,
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# max = 300,
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# value = 100
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# ),
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shinyWidgets::noUiSliderInput(
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inputId = ns("width"),
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label = "Plot width (mm)",
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@ -1946,17 +1954,32 @@ data_visuals_server <- function(id,
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}
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})
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# shiny::observeEvent(input$height_numeric, {
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# shinyWidgets::updateNoUiSliderInput(session, ns("height_slide"), value = input$height_numeric)
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# }, ignoreInit = TRUE)
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# shiny::observeEvent(input$height_slide, {
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# shiny::updateNumericInput(session, ns("height_numeric"), value = input$height_slide)
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# }, ignoreInit = TRUE)
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output$download_plot <- shiny::downloadHandler(
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filename = shiny::reactive({
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paste0("plot.", input$plot_type)
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}),
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content = function(file) {
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if (inherits(rv$plot,"patchwork")){
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plot <- rv$plot
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} else {
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plot <- rv$plot[[1]]
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}
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# browser()
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shiny::withProgress(message = "Drawing the plot. Hold on for a moment..", {
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ggplot2::ggsave(
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filename = file,
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plot = rv$plot,
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plot = plot,
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width = input$width,
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height = input$height,
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height = input$height_slide,
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dpi = 300,
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units = "mm", scale = 2
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)
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@ -2091,8 +2114,8 @@ supported_plots <- function() {
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fun = "plot_euler",
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descr = "Euler diagram",
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note = "Generate area-proportional Euler diagrams to display set relationships",
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primary.type = "dichotomous",
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secondary.type = "dichotomous",
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primary.type = c("dichotomous", "categorical"),
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secondary.type = c("dichotomous", "categorical"),
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secondary.multi = TRUE,
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secondary.max = 4,
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tertiary.type = c("dichotomous", "categorical"),
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@ -3338,7 +3361,7 @@ write_rmd <- function(data, ...) {
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## Ref: https://github.com/quarto-dev/quarto-cli/discussions/4041
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## Outputs to the same as the .qmd file
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rmarkdown::render(
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params = list(data.file = "web_data.rds"),
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params = list(data.file = "web_data.rds",version=app_version()),
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# execute_params = list(data.file = temp),
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...
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)
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@ -3927,6 +3950,13 @@ is_identical_to_previous <- function(data, no.name = TRUE) {
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}
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########
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#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
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########
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hosted_version <- function()'v25.5.1-250505'
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########
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#### Current file: /Users/au301842/FreesearchR/R//html_dependency_freesearchr.R
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########
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@ -4784,6 +4814,12 @@ plot_euler <- function(data, pri, sec, ter = NULL, seed = 2103) {
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#' ) |> plot_euler_single()
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#' mtcars[c("vs", "am")] |> plot_euler_single()
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plot_euler_single <- function(data) {
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# if (any("categorical" %in% data_type(data))){
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# shape <- "ellipse"
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# } else {
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# shape <- "circle"
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# }
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data |>
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ggeulerr(shape = "circle") +
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ggplot2::theme_void() +
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@ -5529,7 +5565,9 @@ m_redcap_readServer <- function(id) {
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)
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# browser()
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shiny::withProgress({
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imported <- try(rlang::exec(REDCapR::redcap_metadata_read, !!!parameters), silent = TRUE)
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},message = paste("Connecting to",data_rv$uri))
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## TODO: Simplify error messages
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if (inherits(imported, "try-error") || NROW(imported) < 1 || ifelse(is.list(imported), !isTRUE(imported$success), FALSE)) {
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@ -5556,8 +5594,10 @@ m_redcap_readServer <- function(id) {
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include_data_alert(
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see_data_text = "Click to see data dictionary",
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dataIdName = "see_data",
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extra = tags$p(tags$b(phosphoricons::ph("check", weight = "bold"), "Connected to server!"),
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glue::glue("The {data_rv$info$project_title} project is loaded.")),
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extra = tags$p(
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tags$b(phosphoricons::ph("check", weight = "bold"), "Connected to server!"),
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glue::glue("The {data_rv$info$project_title} project is loaded.")
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),
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btn_show_data = TRUE
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)
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)
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@ -7521,7 +7561,8 @@ regression_server <- function(id,
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shiny::observeEvent(
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list(
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data_r()
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data_r(),
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regression_vars()
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),
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{
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rv$list$regression$tables <- NULL
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@ -9687,14 +9728,28 @@ ui_elements <- list(
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),
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##############################################################################
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#########
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######### Documentation panel
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######### Feedback link
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#########
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##############################################################################
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"feedback" = bslib::nav_item(
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# shiny::img(shiny::icon("book")),
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shiny::tags$a(
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href = "https://redcap.au.dk/surveys/?s=JPCLPTXYDKFA8DA8",
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"Feedback",shiny::icon("arrow-up-right-from-square"),
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target = "_blank",
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rel = "noopener noreferrer"
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)
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),
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##############################################################################
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#########
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######### Documentation link
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#########
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##############################################################################
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"docs" = bslib::nav_item(
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# shiny::img(shiny::icon("book")),
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shiny::tags$a(
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href = "https://agdamsbo.github.io/FreesearchR/",
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"Docs (external)",
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"Docs",shiny::icon("arrow-up-right-from-square"),
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target = "_blank",
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rel = "noopener noreferrer"
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)
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@ -9736,6 +9791,7 @@ ui <- bslib::page_fixed(
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ui_elements$analyze,
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ui_elements$download,
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bslib::nav_spacer(),
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ui_elements$feedback,
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ui_elements$docs,
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fillable = FALSE,
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footer = shiny::tags$footer(
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@ -9746,7 +9802,7 @@ ui <- bslib::page_fixed(
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),
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shiny::p(
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style = "margin: 1; color: #888;",
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shiny::tags$a("Docs", href = "https://agdamsbo.github.io/FreesearchR/", target = "_blank", rel = "noopener noreferrer")," | ", app_version(), " | ", shiny::tags$a("License: AGPLv3", href = "https://github.com/agdamsbo/FreesearchR/blob/main/LICENSE.md", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Source", href = "https://github.com/agdamsbo/FreesearchR/", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Share feedback", href = "https://redcap.au.dk/surveys/?s=JPCLPTXYDKFA8DA8", target = "_blank", rel = "noopener noreferrer")
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shiny::tags$a("Docs", href = "https://agdamsbo.github.io/FreesearchR/", target = "_blank", rel = "noopener noreferrer")," | ", hosted_version(), " | ", shiny::tags$a("License: AGPLv3", href = "https://github.com/agdamsbo/FreesearchR/blob/main/LICENSE.md", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Source", href = "https://github.com/agdamsbo/FreesearchR/", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Share feedback", href = "https://redcap.au.dk/surveys/?s=JPCLPTXYDKFA8DA8", target = "_blank", rel = "noopener noreferrer")
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),
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)
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)
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@ -9773,9 +9829,7 @@ library(quarto)
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library(here)
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library(broom)
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library(broom.helpers)
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# library(REDCapCAST)
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library(easystats)
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# library(esquisse)
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library(patchwork)
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library(DHARMa)
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library(apexcharter)
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@ -9786,32 +9840,17 @@ library(shinyWidgets)
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library(DT)
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library(data.table)
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library(gtsummary)
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# library(FreesearchR)
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# source("functions.R")
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data(starwars)
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data(mtcars)
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mtcars_date <- mtcars |> append_column(as.Date(sample(1:365, nrow(mtcars))), "rand_dates")
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mtcars_date$date <- as.Date(sample(seq_len(365), nrow(mtcars)))
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data(trial)
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# light <- custom_theme()
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#
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# dark <- custom_theme(bg = "#000",fg="#fff")
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server <- function(input, output, session) {
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## Listing files in www in session start to keep when ending and removing
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## everything else.
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files.to.keep <- list.files("www/")
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output$docs_file <- shiny::renderUI({
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# shiny::includeHTML("www/docs.html")
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shiny::HTML(readLines("www/docs.html"))
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})
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##############################################################################
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#########
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######### Night mode (just very popular, not really needed)
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@ -10480,20 +10519,11 @@ server <- function(input, output, session) {
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paste0("report.", input$output_type)
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}),
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content = function(file, type = input$output_type) {
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# browser()
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# shiny::req(rv$list$regression)
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## Notification is not progressing
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## Presumably due to missing
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# browser()
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# Simplified for .rmd output attempt
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format <- ifelse(type == "docx", "word_document", "odt_document")
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# browser()
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# if (shiny::is.reactive(rv$regression)){
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# rv$list$regression <- rv$regression()
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# }
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# rv$list$regression <- rv$regression()
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rv$list$regression <- rv$regression()
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shiny::withProgress(message = "Generating the report. Hold on for a moment..", {
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@ -30,4 +30,4 @@ Here is a brief summary of the functions:
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- Code to recreate all steps locally
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The full [project documentation is here](https://agdamsbo.github.io/FreesearchR/) where you'll find detailed description of the app and link to the source code! If you want to [share feedback, please follow this link to a simple survey](https://redcap.au.dk/surveys/?s=JPCLPTXYDKFA8DA8), or share on [GitHub](https://github.com/agdamsbo/FreesearchR/issues).
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The full [project documentation is here](https://agdamsbo.github.io/FreesearchR/) where you'll find detailed description of the app and link to the source code! If you want to [share feedback, please follow this link to a simple survey](https://redcap.au.dk/surveys/?s=JPCLPTXYDKFA8DA8).
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