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Andreas Gammelgaard Damsbo 2025-05-14 12:54:44 +02:00
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14
CITATION.cff
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@ -9,7 +9,7 @@ type: software
license: AGPL-3.0-or-later
title: 'FreesearchR: A free and open-source browser based data analysis tool for researchers
with publication ready output'
version: 25.5.4
version: 25.5.5
doi: 10.5281/zenodo.14527429
identifiers:
- type: url
@ -990,6 +990,18 @@ references:
orcid: https://orcid.org/0000-0002-5645-3493
year: '2025'
doi: 10.32614/CRAN.package.shinyjs
- type: software
title: emmeans
abstract: 'emmeans: Estimated Marginal Means, aka Least-Squares Means'
notes: Imports
url: https://rvlenth.github.io/emmeans/
repository: https://CRAN.R-project.org/package=emmeans
authors:
- family-names: Lenth
given-names: Russell V.
email: russell-lenth@uiowa.edu
year: '2025'
doi: 10.32614/CRAN.package.emmeans
- type: software
title: styler
abstract: 'styler: Non-Invasive Pretty Printing of R Code'

5
DESCRIPTION
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@ -1,6 +1,6 @@
Package: FreesearchR
Title: A free and open-source browser based data analysis tool for researchers with publication ready output
Version: 25.5.4
Version: 25.5.5
Authors@R: c(
person("Andreas Gammelgaard", "Damsbo",email="agdamsbo@clin.au.dk", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-7559-1154")),
@ -63,7 +63,8 @@ Imports:
ggforce,
RcppArmadillo,
ggcorrplot,
shinyjs
shinyjs,
emmeans
Suggests:
styler,
devtools,

2
NEWS.md
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@ -2,6 +2,8 @@
- *FIX* several minor bugs and polish
- *FIX* include/exclude p-values in regression table.
# FreesearchR 25.5.4
- *FIX* correctly omit NAs in `data_type()` call

2
R/app_version.R
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@ -1 +1 @@
app_version <- function()'25.5.4'
app_version <- function()'25.5.5'

2
R/hosted_version.R
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@ -1 +1 @@
hosted_version <- function()'v25.5.4-250513'
hosted_version <- function()'v25.5.5-250514'

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R/sysdata.rda
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368
SESSION.md
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@ -11,177 +11,213 @@
|collate |en_US.UTF-8 |
|ctype |en_US.UTF-8 |
|tz |Europe/Copenhagen |
|date |2025-05-10 |
|date |2025-05-14 |
|rstudio |2024.12.1+563 Kousa Dogwood (desktop) |
|pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) |
|quarto |1.7.30 @ /usr/local/bin/quarto |
|FreesearchR |25.5.4.250510 |
|FreesearchR |25.5.5.250514 |
--------------------------------------------------------------------------------
----------------------------------- packages -----------------------------------
--------------------------------------------------------------------------------
|package |loadedversion |date |source |
|:-------------|:-------------|:----------|:--------------|
|apexcharter |0.4.4 |2024-09-06 |CRAN (R 4.4.1) |
|askpass |1.2.1 |2024-10-04 |CRAN (R 4.4.1) |
|assertthat |0.2.1 |2019-03-21 |CRAN (R 4.4.1) |
|backports |1.5.0 |2024-05-23 |CRAN (R 4.4.1) |
|bayestestR |0.15.3 |2025-04-28 |CRAN (R 4.4.1) |
|bit |4.6.0 |2025-03-06 |CRAN (R 4.4.1) |
|bit64 |4.6.0-1 |2025-01-16 |CRAN (R 4.4.1) |
|boot |1.3-31 |2024-08-28 |CRAN (R 4.4.1) |
|broom |1.0.8 |2025-03-28 |CRAN (R 4.4.1) |
|broom.helpers |1.21.0 |2025-04-24 |CRAN (R 4.4.1) |
|bsicons |0.1.2 |2023-11-04 |CRAN (R 4.4.0) |
|bslib |0.9.0 |2025-01-30 |CRAN (R 4.4.1) |
|cachem |1.1.0 |2024-05-16 |CRAN (R 4.4.1) |
|cellranger |1.1.0 |2016-07-27 |CRAN (R 4.4.0) |
|cffr |1.2.0 |2025-01-25 |CRAN (R 4.4.1) |
|class |7.3-23 |2025-01-01 |CRAN (R 4.4.1) |
|classInt |0.4-11 |2025-01-08 |CRAN (R 4.4.1) |
|cli |3.6.5 |2025-04-23 |CRAN (R 4.4.1) |
|commonmark |1.9.5 |2025-03-17 |CRAN (R 4.4.1) |
|correlation |0.8.7 |2025-03-03 |CRAN (R 4.4.1) |
|crayon |1.5.3 |2024-06-20 |CRAN (R 4.4.1) |
|curl |6.2.2 |2025-03-24 |CRAN (R 4.4.1) |
|data.table |1.17.0 |2025-02-22 |CRAN (R 4.4.1) |
|datamods |1.5.3 |2024-10-02 |CRAN (R 4.4.1) |
|datawizard |1.0.2 |2025-03-24 |CRAN (R 4.4.1) |
|desc |1.4.3 |2023-12-10 |CRAN (R 4.4.1) |
|devtools |2.4.5 |2022-10-11 |CRAN (R 4.4.0) |
|DHARMa |0.4.7 |2024-10-18 |CRAN (R 4.4.1) |
|digest |0.6.37 |2024-08-19 |CRAN (R 4.4.1) |
|dplyr |1.1.4 |2023-11-17 |CRAN (R 4.4.0) |
|DT |0.33 |2024-04-04 |CRAN (R 4.4.0) |
|e1071 |1.7-16 |2024-09-16 |CRAN (R 4.4.1) |
|easystats |0.7.4 |2025-02-06 |CRAN (R 4.4.1) |
|effectsize |1.0.0 |2024-12-10 |CRAN (R 4.4.1) |
|ellipsis |0.3.2 |2021-04-29 |CRAN (R 4.4.1) |
|eulerr |7.0.2 |2024-03-28 |CRAN (R 4.4.0) |
|evaluate |1.0.3 |2025-01-10 |CRAN (R 4.4.1) |
|farver |2.1.2 |2024-05-13 |CRAN (R 4.4.1) |
|fastmap |1.2.0 |2024-05-15 |CRAN (R 4.4.1) |
|fontawesome |0.5.3 |2024-11-16 |CRAN (R 4.4.1) |
|forcats |1.0.0 |2023-01-29 |CRAN (R 4.4.0) |
|fs |1.6.6 |2025-04-12 |CRAN (R 4.4.1) |
|generics |0.1.3 |2022-07-05 |CRAN (R 4.4.1) |
|ggalluvial |0.12.5 |2023-02-22 |CRAN (R 4.4.0) |
|ggforce |0.4.2 |2024-02-19 |CRAN (R 4.4.0) |
|ggplot2 |3.5.2 |2025-04-09 |CRAN (R 4.4.1) |
|glue |1.8.0 |2024-09-30 |CRAN (R 4.4.1) |
|gridExtra |2.3 |2017-09-09 |CRAN (R 4.4.1) |
|gt |1.0.0 |2025-04-05 |CRAN (R 4.4.1) |
|gtable |0.3.6 |2024-10-25 |CRAN (R 4.4.1) |
|gtsummary |2.2.0 |2025-04-14 |CRAN (R 4.4.1) |
|haven |2.5.4 |2023-11-30 |CRAN (R 4.4.0) |
|here |1.0.1 |2020-12-13 |CRAN (R 4.4.1) |
|hms |1.1.3 |2023-03-21 |CRAN (R 4.4.0) |
|htmltools |0.5.8.1 |2024-04-04 |CRAN (R 4.4.1) |
|htmlwidgets |1.6.4 |2023-12-06 |CRAN (R 4.4.0) |
|httpuv |1.6.16 |2025-04-16 |CRAN (R 4.4.1) |
|IDEAFilter |0.2.0 |2024-04-15 |CRAN (R 4.4.0) |
|insight |1.2.0 |2025-04-22 |CRAN (R 4.4.1) |
|jquerylib |0.1.4 |2021-04-26 |CRAN (R 4.4.0) |
|jsonlite |2.0.0 |2025-03-27 |CRAN (R 4.4.1) |
|jsonvalidate |1.5.0 |2025-02-07 |CRAN (R 4.4.1) |
|KernSmooth |2.23-26 |2025-01-01 |CRAN (R 4.4.1) |
|keyring |1.3.2 |2023-12-11 |CRAN (R 4.4.0) |
|knitr |1.50 |2025-03-16 |CRAN (R 4.4.1) |
|labeling |0.4.3 |2023-08-29 |CRAN (R 4.4.1) |
|later |1.4.2 |2025-04-08 |CRAN (R 4.4.1) |
|lattice |0.22-7 |2025-04-02 |CRAN (R 4.4.1) |
|lifecycle |1.0.4 |2023-11-07 |CRAN (R 4.4.1) |
|lme4 |1.1-37 |2025-03-26 |CRAN (R 4.4.1) |
|magrittr |2.0.3 |2022-03-30 |CRAN (R 4.4.1) |
|MASS |7.3-65 |2025-02-28 |CRAN (R 4.4.1) |
|Matrix |1.7-3 |2025-03-11 |CRAN (R 4.4.1) |
|memoise |2.0.1 |2021-11-26 |CRAN (R 4.4.0) |
|mime |0.13 |2025-03-17 |CRAN (R 4.4.1) |
|miniUI |0.1.2 |2025-04-17 |CRAN (R 4.4.1) |
|minqa |1.2.8 |2024-08-17 |CRAN (R 4.4.1) |
|modelbased |0.10.0 |2025-03-10 |CRAN (R 4.4.1) |
|nlme |3.1-168 |2025-03-31 |CRAN (R 4.4.1) |
|nloptr |2.2.1 |2025-03-17 |CRAN (R 4.4.1) |
|openssl |2.3.2 |2025-02-03 |CRAN (R 4.4.1) |
|openxlsx2 |1.15 |2025-04-25 |CRAN (R 4.4.1) |
|parameters |0.24.2 |2025-03-04 |CRAN (R 4.4.1) |
|patchwork |1.3.0 |2024-09-16 |CRAN (R 4.4.1) |
|performance |0.13.0 |2025-01-15 |CRAN (R 4.4.1) |
|phosphoricons |0.2.1 |2024-04-08 |CRAN (R 4.4.0) |
|pillar |1.10.2 |2025-04-05 |CRAN (R 4.4.1) |
|pkgbuild |1.4.7 |2025-03-24 |CRAN (R 4.4.1) |
|pkgconfig |2.0.3 |2019-09-22 |CRAN (R 4.4.1) |
|pkgload |1.4.0 |2024-06-28 |CRAN (R 4.4.0) |
|polyclip |1.10-7 |2024-07-23 |CRAN (R 4.4.1) |
|polylabelr |0.3.0 |2024-11-19 |CRAN (R 4.4.1) |
|processx |3.8.6 |2025-02-21 |CRAN (R 4.4.1) |
|profvis |0.4.0 |2024-09-20 |CRAN (R 4.4.1) |
|promises |1.3.2 |2024-11-28 |CRAN (R 4.4.1) |
|proxy |0.4-27 |2022-06-09 |CRAN (R 4.4.1) |
|ps |1.9.1 |2025-04-12 |CRAN (R 4.4.1) |
|purrr |1.0.4 |2025-02-05 |CRAN (R 4.4.1) |
|quarto |1.4.4 |2024-07-20 |CRAN (R 4.4.0) |
|R.cache |0.16.0 |2022-07-21 |CRAN (R 4.4.0) |
|R.methodsS3 |1.8.2 |2022-06-13 |CRAN (R 4.4.1) |
|R.oo |1.27.0 |2024-11-01 |CRAN (R 4.4.1) |
|R.utils |2.13.0 |2025-02-24 |CRAN (R 4.4.1) |
|R6 |2.6.1 |2025-02-15 |CRAN (R 4.4.1) |
|ragg |1.4.0 |2025-04-10 |CRAN (R 4.4.1) |
|rankinPlot |1.1.0 |2023-01-30 |CRAN (R 4.4.0) |
|rbibutils |2.3 |2024-10-04 |CRAN (R 4.4.1) |
|RColorBrewer |1.1-3 |2022-04-03 |CRAN (R 4.4.1) |
|Rcpp |1.0.14 |2025-01-12 |CRAN (R 4.4.1) |
|Rdpack |2.6.4 |2025-04-09 |CRAN (R 4.4.1) |
|reactable |0.4.4 |2023-03-12 |CRAN (R 4.4.0) |
|readODS |2.3.2 |2025-01-13 |CRAN (R 4.4.1) |
|readr |2.1.5 |2024-01-10 |CRAN (R 4.4.0) |
|readxl |1.4.5 |2025-03-07 |CRAN (R 4.4.1) |
|REDCapCAST |25.3.2 |2025-03-10 |CRAN (R 4.4.1) |
|REDCapR |1.4.0 |2025-01-11 |CRAN (R 4.4.1) |
|reformulas |0.4.0 |2024-11-03 |CRAN (R 4.4.1) |
|remotes |2.5.0 |2024-03-17 |CRAN (R 4.4.1) |
|renv |1.1.4 |2025-03-20 |CRAN (R 4.4.1) |
|report |0.6.1 |2025-02-07 |CRAN (R 4.4.1) |
|rio |1.2.3 |2024-09-25 |CRAN (R 4.4.1) |
|rlang |1.1.6 |2025-04-11 |CRAN (R 4.4.1) |
|rmarkdown |2.29 |2024-11-04 |CRAN (R 4.4.1) |
|roxygen2 |7.3.2 |2024-06-28 |CRAN (R 4.4.0) |
|rprojroot |2.0.4 |2023-11-05 |CRAN (R 4.4.1) |
|rsconnect |1.3.4 |2025-01-22 |CRAN (R 4.4.1) |
|rstudioapi |0.17.1 |2024-10-22 |CRAN (R 4.4.1) |
|sass |0.4.10 |2025-04-11 |CRAN (R 4.4.1) |
|scales |1.4.0 |2025-04-24 |CRAN (R 4.4.1) |
|see |0.11.0 |2025-03-11 |CRAN (R 4.4.1) |
|sessioninfo |1.2.3 |2025-02-05 |CRAN (R 4.4.1) |
|shiny |1.10.0 |2024-12-14 |CRAN (R 4.4.1) |
|shinybusy |0.3.3 |2024-03-09 |CRAN (R 4.4.0) |
|shinyjs |2.1.0 |2021-12-23 |CRAN (R 4.4.0) |
|shinyTime |1.0.3 |2022-08-19 |CRAN (R 4.4.0) |
|shinyWidgets |0.9.0 |2025-02-21 |CRAN (R 4.4.1) |
|stringi |1.8.7 |2025-03-27 |CRAN (R 4.4.1) |
|stringr |1.5.1 |2023-11-14 |CRAN (R 4.4.0) |
|styler |1.10.3 |2024-04-07 |CRAN (R 4.4.0) |
|systemfonts |1.2.2 |2025-04-04 |CRAN (R 4.4.1) |
|textshaping |1.0.0 |2025-01-20 |CRAN (R 4.4.1) |
|tibble |3.2.1 |2023-03-20 |CRAN (R 4.4.0) |
|tidyr |1.3.1 |2024-01-24 |CRAN (R 4.4.1) |
|tidyselect |1.2.1 |2024-03-11 |CRAN (R 4.4.0) |
|toastui |0.4.0 |2025-04-03 |CRAN (R 4.4.1) |
|tweenr |2.0.3 |2024-02-26 |CRAN (R 4.4.0) |
|tzdb |0.5.0 |2025-03-15 |CRAN (R 4.4.1) |
|urlchecker |1.0.1 |2021-11-30 |CRAN (R 4.4.1) |
|usethis |3.1.0 |2024-11-26 |CRAN (R 4.4.1) |
|utf8 |1.2.4 |2023-10-22 |CRAN (R 4.4.1) |
|V8 |6.0.3 |2025-03-26 |CRAN (R 4.4.1) |
|vctrs |0.6.5 |2023-12-01 |CRAN (R 4.4.0) |
|viridis |0.6.5 |2024-01-29 |CRAN (R 4.4.0) |
|viridisLite |0.4.2 |2023-05-02 |CRAN (R 4.4.1) |
|vroom |1.6.5 |2023-12-05 |CRAN (R 4.4.0) |
|withr |3.0.2 |2024-10-28 |CRAN (R 4.4.1) |
|writexl |1.5.4 |2025-04-15 |CRAN (R 4.4.1) |
|xfun |0.52 |2025-04-02 |CRAN (R 4.4.1) |
|xml2 |1.3.8 |2025-03-14 |CRAN (R 4.4.1) |
|xtable |1.8-4 |2019-04-21 |CRAN (R 4.4.1) |
|yaml |2.3.10 |2024-07-26 |CRAN (R 4.4.1) |
|zip |2.3.2 |2025-02-01 |CRAN (R 4.4.1) |
|package |loadedversion |date |source |
|:-----------------|:-------------|:----------|:--------------|
|apexcharter |0.4.4 |2024-09-06 |CRAN (R 4.4.1) |
|askpass |1.2.1 |2024-10-04 |CRAN (R 4.4.1) |
|assertthat |0.2.1 |2019-03-21 |CRAN (R 4.4.1) |
|backports |1.5.0 |2024-05-23 |CRAN (R 4.4.1) |
|base64enc |0.1-3 |2015-07-28 |CRAN (R 4.4.1) |
|bayestestR |0.15.3 |2025-04-28 |CRAN (R 4.4.1) |
|bit |4.6.0 |2025-03-06 |CRAN (R 4.4.1) |
|bit64 |4.6.0-1 |2025-01-16 |CRAN (R 4.4.1) |
|bitops |1.0-9 |2024-10-03 |CRAN (R 4.4.1) |
|boot |1.3-31 |2024-08-28 |CRAN (R 4.4.1) |
|brio |1.1.5 |2024-04-24 |CRAN (R 4.4.1) |
|broom |1.0.8 |2025-03-28 |CRAN (R 4.4.1) |
|broom.helpers |1.21.0 |2025-04-24 |CRAN (R 4.4.1) |
|bsicons |0.1.2 |2023-11-04 |CRAN (R 4.4.0) |
|bslib |0.9.0 |2025-01-30 |CRAN (R 4.4.1) |
|cachem |1.1.0 |2024-05-16 |CRAN (R 4.4.1) |
|cards |0.6.0 |2025-04-11 |CRAN (R 4.4.1) |
|cardx |0.2.4 |2025-04-12 |CRAN (R 4.4.1) |
|caTools |1.18.3 |2024-09-04 |CRAN (R 4.4.1) |
|cellranger |1.1.0 |2016-07-27 |CRAN (R 4.4.0) |
|cffr |1.2.0 |2025-01-25 |CRAN (R 4.4.1) |
|checkmate |2.3.2 |2024-07-29 |CRAN (R 4.4.0) |
|class |7.3-23 |2025-01-01 |CRAN (R 4.4.1) |
|classInt |0.4-11 |2025-01-08 |CRAN (R 4.4.1) |
|cli |3.6.5 |2025-04-23 |CRAN (R 4.4.1) |
|cluster |2.1.8.1 |2025-03-12 |CRAN (R 4.4.1) |
|codetools |0.2-20 |2024-03-31 |CRAN (R 4.4.1) |
|colorspace |2.1-1 |2024-07-26 |CRAN (R 4.4.1) |
|commonmark |1.9.5 |2025-03-17 |CRAN (R 4.4.1) |
|crayon |1.5.3 |2024-06-20 |CRAN (R 4.4.1) |
|curl |6.2.2 |2025-03-24 |CRAN (R 4.4.1) |
|data.table |1.17.0 |2025-02-22 |CRAN (R 4.4.1) |
|datamods |1.5.3 |2024-10-02 |CRAN (R 4.4.1) |
|datawizard |1.0.2 |2025-03-24 |CRAN (R 4.4.1) |
|DEoptimR |1.1-3-1 |2024-11-23 |CRAN (R 4.4.1) |
|desc |1.4.3 |2023-12-10 |CRAN (R 4.4.1) |
|devtools |2.4.5 |2022-10-11 |CRAN (R 4.4.0) |
|DHARMa |0.4.7 |2024-10-18 |CRAN (R 4.4.1) |
|digest |0.6.37 |2024-08-19 |CRAN (R 4.4.1) |
|doParallel |1.0.17 |2022-02-07 |CRAN (R 4.4.0) |
|dplyr |1.1.4 |2023-11-17 |CRAN (R 4.4.0) |
|DT |0.33 |2024-04-04 |CRAN (R 4.4.0) |
|e1071 |1.7-16 |2024-09-16 |CRAN (R 4.4.1) |
|easystats |0.7.4 |2025-02-06 |CRAN (R 4.4.1) |
|ellipsis |0.3.2 |2021-04-29 |CRAN (R 4.4.1) |
|emmeans |1.11.1 |2025-05-04 |CRAN (R 4.4.1) |
|esquisse |2.1.0 |2025-02-21 |CRAN (R 4.4.1) |
|estimability |1.5.1 |2024-05-12 |CRAN (R 4.4.0) |
|eulerr |7.0.2 |2024-03-28 |CRAN (R 4.4.0) |
|evaluate |1.0.3 |2025-01-10 |CRAN (R 4.4.1) |
|farver |2.1.2 |2024-05-13 |CRAN (R 4.4.1) |
|fastmap |1.2.0 |2024-05-15 |CRAN (R 4.4.1) |
|flextable |0.9.7 |2024-10-27 |CRAN (R 4.4.1) |
|fontawesome |0.5.3 |2024-11-16 |CRAN (R 4.4.1) |
|fontBitstreamVera |0.1.1 |2017-02-01 |CRAN (R 4.4.1) |
|fontLiberation |0.1.0 |2016-10-15 |CRAN (R 4.4.1) |
|fontquiver |0.2.1 |2017-02-01 |CRAN (R 4.4.0) |
|forcats |1.0.0 |2023-01-29 |CRAN (R 4.4.0) |
|foreach |1.5.2 |2022-02-02 |CRAN (R 4.4.0) |
|foreign |0.8-90 |2025-03-31 |CRAN (R 4.4.1) |
|Formula |1.2-5 |2023-02-24 |CRAN (R 4.4.1) |
|FreesearchR |25.5.5 |NA |NA |
|fs |1.6.6 |2025-04-12 |CRAN (R 4.4.1) |
|gdtools |0.4.2 |2025-03-27 |CRAN (R 4.4.1) |
|generics |0.1.3 |2022-07-05 |CRAN (R 4.4.1) |
|ggalluvial |0.12.5 |2023-02-22 |CRAN (R 4.4.0) |
|ggcorrplot |0.1.4.1 |2023-09-05 |CRAN (R 4.4.0) |
|ggforce |0.4.2 |2024-02-19 |CRAN (R 4.4.0) |
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152
renv.lock
View file

@ -2710,6 +2710,86 @@
"Author": "Mattan S. Ben-Shachar [aut, cre] (<https://orcid.org/0000-0002-4287-4801>), Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>), Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>), Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>), Brenton M. Wiernik [aut] (<https://orcid.org/0000-0001-9560-6336>), Rémi Thériault [aut] (<https://orcid.org/0000-0003-4315-6788>), Ken Kelley [ctb], David Stanley [ctb], Aaron Caldwell [ctb] (<https://orcid.org/0000-0002-4541-6283>), Jessica Burnett [rev] (<https://orcid.org/0000-0002-0896-5099>), Johannes Karreth [rev] (<https://orcid.org/0000-0003-4586-7153>), Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>)",
"Repository": "CRAN"
},
"emmeans": {
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"Version": "1.11.1",
"Source": "Repository",
"Type": "Package",
"Title": "Estimated Marginal Means, aka Least-Squares Means",
"Date": "2025-05-03",
"Authors@R": "c(person(\"Russell V.\", \"Lenth\", role = c(\"aut\", \"cre\", \"cph\"), email = \"russell-lenth@uiowa.edu\"), person(\"Balazs\", \"Banfai\", role = \"ctb\"), person(\"Ben\", \"Bolker\", role = \"ctb\"), person(\"Paul\", \"Buerkner\", role = \"ctb\"), person(\"Iago\", \"Giné-Vázquez\", role = \"ctb\"), person(\"Maxime\", \"Herve\", role = \"ctb\"), person(\"Maarten\", \"Jung\", role = \"ctb\"), person(\"Jonathon\", \"Love\", role = \"ctb\"), person(\"Fernando\", \"Miguez\", role = \"ctb\"), person(\"Julia\", \"Piaskowski\", role = \"ctb\"), person(\"Hannes\", \"Riebl\", role = \"ctb\"), person(\"Henrik\", \"Singmann\", role = \"ctb\"))",
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"R (>= 4.1.0)"
],
"Imports": [
"estimability (>= 1.4.1)",
"graphics",
"methods",
"mvtnorm",
"numDeriv",
"stats",
"utils"
],
"Suggests": [
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"bayestestR",
"biglm",
"brms",
"car",
"coda (>= 0.17)",
"compositions",
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"knitr",
"lattice",
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"Enhances": [
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"coxme",
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"geepack",
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"MCMCpack",
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"pscl",
"rstanarm",
"sommer",
"survival"
],
"URL": "https://rvlenth.github.io/emmeans/,https://rvlenth.github.io/emmeans/",
"BugReports": "https://github.com/rvlenth/emmeans/issues",
"LazyData": "yes",
"ByteCompile": "yes",
"Description": "Obtain estimated marginal means (EMMs) for many linear, generalized linear, and mixed models. Compute contrasts or linear functions of EMMs, trends, and comparisons of slopes. Plots and other displays. Least-squares means are discussed, and the term \"estimated marginal means\" is suggested, in Searle, Speed, and Milliken (1980) Population marginal means in the linear model: An alternative to least squares means, The American Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.",
"License": "GPL-2 | GPL-3",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.2",
"VignetteBuilder": "knitr",
"NeedsCompilation": "no",
"Author": "Russell V. Lenth [aut, cre, cph], Balazs Banfai [ctb], Ben Bolker [ctb], Paul Buerkner [ctb], Iago Giné-Vázquez [ctb], Maxime Herve [ctb], Maarten Jung [ctb], Jonathon Love [ctb], Fernando Miguez [ctb], Julia Piaskowski [ctb], Hannes Riebl [ctb], Henrik Singmann [ctb]",
"Maintainer": "Russell V. Lenth <russell-lenth@uiowa.edu>",
"Repository": "CRAN"
},
"esquisse": {
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"Version": "2.1.0",
@ -2757,6 +2837,33 @@
"Maintainer": "Victor Perrier <victor.perrier@dreamrs.fr>",
"Repository": "CRAN"
},
"estimability": {
"Package": "estimability",
"Version": "1.5.1",
"Source": "Repository",
"Type": "Package",
"Title": "Tools for Assessing Estimability of Linear Predictions",
"Date": "2024-05-12",
"Authors@R": "c(person(\"Russell\", \"Lenth\", role = c(\"aut\", \"cre\", \"cph\"), email = \"russell-lenth@uiowa.edu\"))",
"Depends": [
"stats",
"R(>= 4.1.0)"
],
"Suggests": [
"knitr",
"rmarkdown"
],
"Description": "Provides tools for determining estimability of linear functions of regression coefficients, and 'epredict' methods that handle non-estimable cases correctly. Estimability theory is discussed in many linear-models textbooks including Chapter 3 of Monahan, JF (2008), \"A Primer on Linear Models\", Chapman and Hall (ISBN 978-1-4200-6201-4).",
"URL": "https://github.com/rvlenth/estimability, https://rvlenth.github.io/estimability/",
"BugReports": "https://github.com/rvlenth/estimability/issues",
"ByteCompile": "yes",
"License": "GPL (>= 3)",
"VignetteBuilder": "knitr",
"NeedsCompilation": "no",
"Author": "Russell Lenth [aut, cre, cph]",
"Maintainer": "Russell Lenth <russell-lenth@uiowa.edu>",
"Repository": "CRAN"
},
"eulerr": {
"Package": "eulerr",
"Version": "7.0.2",
@ -5407,6 +5514,31 @@
"Author": "Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>), Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>), Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>), Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>), Rémi Thériault [aut] (<https://orcid.org/0000-0003-4315-6788>)",
"Repository": "CRAN"
},
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"Package": "mvtnorm",
"Version": "1.3-3",
"Source": "Repository",
"Title": "Multivariate Normal and t Distributions",
"Date": "2025-01-09",
"Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))",
"Description": "Computes multivariate normal and t probabilities, quantiles, random deviates, and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae parameterised by Cholesky factors of covariance or precision matrices are implemented for interval-censored and exact data, or a mix thereof. Score functions for these log-likelihoods are available. A class representing multiple lower triangular matrices and corresponding methods are part of this package.",
"Imports": [
"stats"
],
"Depends": [
"R(>= 3.5.0)"
],
"Suggests": [
"qrng",
"numDeriv"
],
"License": "GPL-2",
"URL": "http://mvtnorm.R-forge.R-project.org",
"NeedsCompilation": "yes",
"Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (<https://orcid.org/0000-0002-6294-8185>), Martin Maechler [ctb] (<https://orcid.org/0000-0002-8685-9910>), Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)",
"Maintainer": "Torsten Hothorn <Torsten.Hothorn@R-project.org>",
"Repository": "CRAN"
},
"nlme": {
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@ -5493,6 +5625,26 @@
"Maintainer": "Brian Ripley <Brian.Ripley@R-project.org>",
"Repository": "CRAN"
},
"numDeriv": {
"Package": "numDeriv",
"Version": "2016.8-1.1",
"Source": "Repository",
"Title": "Accurate Numerical Derivatives",
"Description": "Methods for calculating (usually) accurate numerical first and second order derivatives. Accurate calculations are done using 'Richardson''s' extrapolation or, when applicable, a complex step derivative is available. A simple difference method is also provided. Simple difference is (usually) less accurate but is much quicker than 'Richardson''s' extrapolation and provides a useful cross-check. Methods are provided for real scalar and vector valued functions.",
"Depends": [
"R (>= 2.11.1)"
],
"LazyLoad": "yes",
"ByteCompile": "yes",
"License": "GPL-2",
"Copyright": "2006-2011, Bank of Canada. 2012-2016, Paul Gilbert",
"Author": "Paul Gilbert and Ravi Varadhan",
"Maintainer": "Paul Gilbert <pgilbert.ttv9z@ncf.ca>",
"URL": "http://optimizer.r-forge.r-project.org/",
"NeedsCompilation": "no",
"Repository": "RSPM",
"Encoding": "UTF-8"
},
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