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Andreas Gammelgaard Damsbo 2026-03-30 20:26:09 +02:00
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1163
app_docker/app.R
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app_docker/renv.lock
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@ -35,12 +35,12 @@
},
"DHARMa": {
"Package": "DHARMa",
"Version": "0.4.6",
"Version": "0.4.7",
"Source": "Repository",
"Title": "Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models",
"Date": "2022-09-08",
"Authors@R": "c(person(\"Florian\", \"Hartig\", email = \"florian.hartig@biologie.uni-regensburg.de\", role = c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-6255-9059\")), person(\"Lukas\", \"Lohse\", role = \"ctb\"))",
"Description": "The 'DHARMa' package uses a simulation-based approach to create readily interpretable scaled (quantile) residuals for fitted (generalized) linear mixed models. Currently supported are linear and generalized linear (mixed) models from 'lme4' (classes 'lmerMod', 'glmerMod'), 'glmmTMB' 'GLMMadaptive' and 'spaMM', generalized additive models ('gam' from 'mgcv'), 'glm' (including 'negbin' from 'MASS', but excluding quasi-distributions) and 'lm' model classes. Moreover, externally created simulations, e.g. posterior predictive simulations from Bayesian software such as 'JAGS', 'STAN', or 'BUGS' can be processed as well. The resulting residuals are standardized to values between 0 and 1 and can be interpreted as intuitively as residuals from a linear regression. The package also provides a number of plot and test functions for typical model misspecification problems, such as over/underdispersion, zero-inflation, and residual spatial and temporal autocorrelation.",
"Date": "2024-10-16",
"Authors@R": "c(person(\"Florian\", \"Hartig\", email = \"florian.hartig@biologie.uni-regensburg.de\", role = c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-6255-9059\")), person(\"Lukas\", \"Lohse\", role = \"ctb\"), person(\"Melina\", \"de Souza leite\", role = \"ctb\"))",
"Description": "The 'DHARMa' package uses a simulation-based approach to create readily interpretable scaled (quantile) residuals for fitted (generalized) linear mixed models. Currently supported are linear and generalized linear (mixed) models from 'lme4' (classes 'lmerMod', 'glmerMod'), 'glmmTMB', 'GLMMadaptive', and 'spaMM'; phylogenetic linear models from 'phylolm' (classes 'phylolm' and 'phyloglm'); generalized additive models ('gam' from 'mgcv'); 'glm' (including 'negbin' from 'MASS', but excluding quasi-distributions) and 'lm' model classes. Moreover, externally created simulations, e.g. posterior predictive simulations from Bayesian software such as 'JAGS', 'STAN', or 'BUGS' can be processed as well. The resulting residuals are standardized to values between 0 and 1 and can be interpreted as intuitively as residuals from a linear regression. The package also provides a number of plot and test functions for typical model misspecification problems, such as over/underdispersion, zero-inflation, and residual spatial, phylogenetic and temporal autocorrelation.",
"Depends": [
"R (>= 3.0.2)"
],
@ -59,7 +59,7 @@
],
"Suggests": [
"knitr",
"testthat",
"testthat (>= 3.0.0)",
"rmarkdown",
"KernSmooth",
"sfsmisc",
@ -68,7 +68,8 @@
"mgcViz (>= 0.1.9)",
"spaMM (>= 3.2.0)",
"GLMMadaptive",
"glmmTMB (>= 1.1.2.3)"
"glmmTMB (>= 1.1.2.3)",
"phylolm (>= 2.6.5)"
],
"Enhances": [
"phyr",
@ -80,11 +81,12 @@
"URL": "http://florianhartig.github.io/DHARMa/",
"LazyData": "TRUE",
"BugReports": "https://github.com/florianhartig/DHARMa/issues",
"RoxygenNote": "7.2.1",
"RoxygenNote": "7.3.2",
"VignetteBuilder": "knitr",
"Encoding": "UTF-8",
"Config/testthat/edition": "3",
"NeedsCompilation": "no",
"Author": "Florian Hartig [aut, cre] (<https://orcid.org/0000-0002-6255-9059>), Lukas Lohse [ctb]",
"Author": "Florian Hartig [aut, cre] (<https://orcid.org/0000-0002-6255-9059>), Lukas Lohse [ctb], Melina de Souza leite [ctb]",
"Maintainer": "Florian Hartig <florian.hartig@biologie.uni-regensburg.de>",
"Repository": "CRAN"
},
@ -2345,7 +2347,7 @@
},
"datamods": {
"Package": "datamods",
"Version": "1.5.2",
"Version": "1.5.3",
"Source": "Repository",
"Title": "Modules to Import and Manipulate Data in 'Shiny'",
"Authors@R": "c(person(given = \"Victor\", family = \"Perrier\", role = c(\"aut\", \"cre\", \"cph\"), email = \"victor.perrier@dreamrs.fr\"), person(given = \"Fanny\", family = \"Meyer\", role = \"aut\"), person(given = \"Samra\", family = \"Goumri\", role = \"aut\"), person(given = \"Zauad Shahreer\", family = \"Abeer\", role = \"aut\", email = \"shahreyar.abeer@gmail.com\"), person(given = \"Eduard\", family = \"Szöcs\", role = \"ctb\", email = \"eduardszoecs@gmail.com\") )",
@ -8357,7 +8359,7 @@
},
"shinybusy": {
"Package": "shinybusy",
"Version": "0.3.2",
"Version": "0.3.3",
"Source": "Repository",
"Title": "Busy Indicators and Notifications for 'Shiny' Applications",
"Authors@R": "c(person(\"Fanny\", \"Meyer\", role = \"aut\"), person(\"Victor\", \"Perrier\", email = \"victor.perrier@dreamrs.fr\", role = c(\"aut\", \"cre\")), person(\"Silex Technologies\", comment = \"https://www.silex-ip.com\", role = \"fnd\"))",
@ -8370,8 +8372,8 @@
"jsonlite",
"htmlwidgets"
],
"RoxygenNote": "7.2.3",
"URL": "https://github.com/dreamRs/shinybusy",
"RoxygenNote": "7.3.1",
"URL": "https://github.com/dreamRs/shinybusy, https://dreamrs.github.io/shinybusy/",
"BugReports": "https://github.com/dreamRs/shinybusy/issues",
"Suggests": [
"testthat",

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app_docker/translations/translation_da.csv
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@ -55,7 +55,6 @@
"Imported data","Importeret data"
"www/intro.md","www/intro.md"
"Choose your data","Vælg dine data"
"Factor variable to reorder:","Kategoriske variabel der skal ændres:"
"Sort by levels","Sorter efter niveauer"
"Sort by count","Sorter efter antal"
"Update factor variable","Updater faktor-variabel"
@ -148,16 +147,12 @@
"Import data from REDCap","Importér data fra REDCap"
"REDCap server","REDCap-server"
"Web address","Serveradresse"
"Format should be either 'https://redcap.your.institution/' or 'https://your.institution/redcap/'","Adressen skal være som 'https://redcap.your.institution/' eller 'https://your.institution/redcap/'"
"API token","API-nøgle"
"The token is a string of 32 numbers and letters.","En API-nøgle består af ialt 32 tal og bogstaver."
"Connect","Forbind"
"Data import parameters","Data import parameters"
"Select fields/variables to import and click the funnel to apply optional filters","Vælg variabler, der skal importeres og tryk på tragten for at anvende valgfrie filtre"
"Import","Import"
"Click to see data dictionary","Tryk for at se metadata (Data Dictionary)"
"Connected to server!","Forbindelse til serveren oprettet!"
"The {data_rv$info$project_title} project is loaded.","{data_rv$info$project_title}-projektet er forbundet."
"Data dictionary","Data dictionary"
"Preview:","Forsmag:"
"Imported data set","Importeret datasæt"
@ -165,8 +160,6 @@
"Specify the data format","Specificér dataformatet"
"Fill missing values?","Skal manglende observationer udfyldes?"
"Requested data was retrieved!","Det udvalgte data blev hentet!"
"Data retrieved, but it looks like only the ID was retrieved from the server. Please check with your REDCap administrator that you have required permissions for data access.","Data er hentet, men det ser ud til kun at indeholde ID-variablen. Du skal kontakte din REDCap-administrator og sikre dig at du har adgang til faktisk at hente de udvalgte data."
"Data retrieved, but it looks like not all requested fields were retrieved from the server. Please check with your REDCap administrator that you have required permissions for data access.","Data er hentet, men det ser ud til kun at indeholde nogle af de udvalgte variabler. Du skal kontakte din REDCap-administrator og sikre dig at du har adgang til faktisk at hente de udvalgte data."
"Click to see the imported data","Tryk for at se de importerede data"
"Regression table","Regressionstabel"
"Import a dataset from an environment","Importer et datasæt fra et kodemiljø"
@ -291,7 +284,6 @@
"No data present.","Ingen data tilstede."
"You have provided a complete dataset with no missing values.","Data er uden manglende observationer."
"Start by loading data.","Start med at vælge data."
"Create a new variable; otherwise replaces (Updating labels always creates new variable)","Create a new variable; otherwise replaces (Updating labels always creates new variable)"
"Data classes and missing observations","Data classes and missing observations"
"We encountered the following error showing missingness:","We encountered the following error showing missingness:"
"Please confirm data reset!","Please confirm data reset!"
@ -323,3 +315,9 @@
"Settings","Settings"
"Create new factor","Create new factor"
"Choose color palette","Choose color palette"
"Optional filter logic (e.g., ⁠[gender] = 'female')","Optional filter logic (e.g., ⁠[gender] = 'female')"
"Drop empty","Drop empty"
"Choose variable:","Choose variable:"
"An empty data set was imported. Please review data filter.","An empty data set was imported. Please review data filter."
"An error was encountered exporting data. Please review data filter.","An error was encountered exporting data. Please review data filter."
"Likert diagram","Likert diagram"

1 en da
55 Imported data Importeret data
56 www/intro.md www/intro.md
57 Choose your data Vælg dine data
Factor variable to reorder: Kategoriske variabel der skal ændres:
58 Sort by levels Sorter efter niveauer
59 Sort by count Sorter efter antal
60 Update factor variable Updater faktor-variabel
147 Import data from REDCap Importér data fra REDCap
148 REDCap server REDCap-server
149 Web address Serveradresse
Format should be either 'https://redcap.your.institution/' or 'https://your.institution/redcap/' Adressen skal være som 'https://redcap.your.institution/' eller 'https://your.institution/redcap/'
150 API token API-nøgle
The token is a string of 32 numbers and letters. En API-nøgle består af ialt 32 tal og bogstaver.
151 Connect Forbind
152 Data import parameters Data import parameters
Select fields/variables to import and click the funnel to apply optional filters Vælg variabler, der skal importeres og tryk på tragten for at anvende valgfrie filtre
153 Import Import
154 Click to see data dictionary Tryk for at se metadata (Data Dictionary)
155 Connected to server! Forbindelse til serveren oprettet!
The {data_rv$info$project_title} project is loaded. {data_rv$info$project_title}-projektet er forbundet.
156 Data dictionary Data dictionary
157 Preview: Forsmag:
158 Imported data set Importeret datasæt
160 Specify the data format Specificér dataformatet
161 Fill missing values? Skal manglende observationer udfyldes?
162 Requested data was retrieved! Det udvalgte data blev hentet!
Data retrieved, but it looks like only the ID was retrieved from the server. Please check with your REDCap administrator that you have required permissions for data access. Data er hentet, men det ser ud til kun at indeholde ID-variablen. Du skal kontakte din REDCap-administrator og sikre dig at du har adgang til faktisk at hente de udvalgte data.
Data retrieved, but it looks like not all requested fields were retrieved from the server. Please check with your REDCap administrator that you have required permissions for data access. Data er hentet, men det ser ud til kun at indeholde nogle af de udvalgte variabler. Du skal kontakte din REDCap-administrator og sikre dig at du har adgang til faktisk at hente de udvalgte data.
163 Click to see the imported data Tryk for at se de importerede data
164 Regression table Regressionstabel
165 Import a dataset from an environment Importer et datasæt fra et kodemiljø
284 No data present. Ingen data tilstede.
285 You have provided a complete dataset with no missing values. Data er uden manglende observationer.
286 Start by loading data. Start med at vælge data.
Create a new variable; otherwise replaces (Updating labels always creates new variable) Create a new variable; otherwise replaces (Updating labels always creates new variable)
287 Data classes and missing observations Data classes and missing observations
288 We encountered the following error showing missingness: We encountered the following error showing missingness:
289 Please confirm data reset! Please confirm data reset!
315 Settings Settings
316 Create new factor Create new factor
317 Choose color palette Choose color palette
318 Optional filter logic (e.g., ⁠[gender] = 'female') Optional filter logic (e.g., ⁠[gender] = 'female')
319 Drop empty Drop empty
320 Choose variable: Choose variable:
321 An empty data set was imported. Please review data filter. An empty data set was imported. Please review data filter.
322 An error was encountered exporting data. Please review data filter. An error was encountered exporting data. Please review data filter.
323 Likert diagram Likert diagram

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app_docker/translations/translation_sw.csv
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@ -55,7 +55,6 @@
"Imported data","Data iliyoingizwa"
"www/intro.md","www/intro.md"
"Choose your data","Chagua data yako"
"Factor variable to reorder:","Kigezo cha vipengele ili kupanga upya:"
"Sort by levels","Panga kwa viwango"
"Sort by count","Panga kwa hesabu"
"Update factor variable","Sasisha kigezo cha kipengele"
@ -148,16 +147,12 @@
"Import data from REDCap","Ingiza data kutoka REDCap"
"REDCap server","Seva ya REDCap"
"Web address","Anwani ya wavuti"
"Format should be either 'https://redcap.your.institution/' or 'https://your.institution/redcap/'","Muundo unapaswa kuwa 'https://redcap.your.institution/' au 'https://your.institution/redcap/'"
"API token","Tokeni ya API"
"The token is a string of 32 numbers and letters.","Tokeni ni mfuatano wa nambari na herufi 32."
"Connect","Unganisha"
"Data import parameters","Vigezo vya kuingiza data"
"Select fields/variables to import and click the funnel to apply optional filters","Chagua sehemu/vigezo vya kuingiza na ubofye faneli ili kutumia vichujio vya hiari"
"Import","Ingiza"
"Click to see data dictionary","Bofya ili kuona kamusi ya data"
"Connected to server!","Imeunganishwa na seva!"
"The {data_rv$info$project_title} project is loaded.","Mradi wa {data_rv$info$project_title} umepakiwa."
"Data dictionary","Kamusi ya data"
"Preview:","Hakikisho:"
"Imported data set","Seti ya data iliyoingizwa"
@ -165,8 +160,6 @@
"Specify the data format","Bainisha umbizo la data"
"Fill missing values?","Jaza thamani zinazokosekana?"
"Requested data was retrieved!","Data iliyoombwa ilipatikana!"
"Data retrieved, but it looks like only the ID was retrieved from the server. Please check with your REDCap administrator that you have required permissions for data access.","Data imerejeshwa, lakini inaonekana ni kitambulisho pekee kilichorejeshwa kutoka kwa seva. Tafadhali wasiliana na msimamizi wako wa REDCap kama una ruhusa zinazohitajika kwa ufikiaji wa data."
"Data retrieved, but it looks like not all requested fields were retrieved from the server. Please check with your REDCap administrator that you have required permissions for data access.","Data imerejeshwa, lakini inaonekana kama si sehemu zote zilizoombwa zilizorejeshwa kutoka kwa seva. Tafadhali wasiliana na msimamizi wako wa REDCap kama una ruhusa zinazohitajika kwa ufikiaji wa data."
"Click to see the imported data","Bofya ili kuona data iliyoingizwa"
"Regression table","Jedwali la urejeshaji"
"Import a dataset from an environment","Ingiza seti ya data kutoka kwa mazingira"
@ -291,7 +284,6 @@
"No data present.","No data present."
"You have provided a complete dataset with no missing values.","You have provided a complete dataset with no missing values."
"Start by loading data.","Start by loading data."
"Create a new variable; otherwise replaces (Updating labels always creates new variable)","Create a new variable; otherwise replaces (Updating labels always creates new variable)"
"Data classes and missing observations","Data classes and missing observations"
"We encountered the following error showing missingness:","We encountered the following error showing missingness:"
"Please confirm data reset!","Please confirm data reset!"
@ -323,3 +315,9 @@
"Settings","Settings"
"Create new factor","Create new factor"
"Choose color palette","Choose color palette"
"Optional filter logic (e.g., ⁠[gender] = 'female')","Optional filter logic (e.g., ⁠[gender] = 'female')"
"Drop empty","Drop empty"
"Choose variable:","Choose variable:"
"An empty data set was imported. Please review data filter.","An empty data set was imported. Please review data filter."
"An error was encountered exporting data. Please review data filter.","An error was encountered exporting data. Please review data filter."
"Likert diagram","Likert diagram"

1 en sw
55 Imported data Data iliyoingizwa
56 www/intro.md www/intro.md
57 Choose your data Chagua data yako
Factor variable to reorder: Kigezo cha vipengele ili kupanga upya:
58 Sort by levels Panga kwa viwango
59 Sort by count Panga kwa hesabu
60 Update factor variable Sasisha kigezo cha kipengele
147 Import data from REDCap Ingiza data kutoka REDCap
148 REDCap server Seva ya REDCap
149 Web address Anwani ya wavuti
Format should be either 'https://redcap.your.institution/' or 'https://your.institution/redcap/' Muundo unapaswa kuwa 'https://redcap.your.institution/' au 'https://your.institution/redcap/'
150 API token Tokeni ya API
The token is a string of 32 numbers and letters. Tokeni ni mfuatano wa nambari na herufi 32.
151 Connect Unganisha
152 Data import parameters Vigezo vya kuingiza data
Select fields/variables to import and click the funnel to apply optional filters Chagua sehemu/vigezo vya kuingiza na ubofye faneli ili kutumia vichujio vya hiari
153 Import Ingiza
154 Click to see data dictionary Bofya ili kuona kamusi ya data
155 Connected to server! Imeunganishwa na seva!
The {data_rv$info$project_title} project is loaded. Mradi wa {data_rv$info$project_title} umepakiwa.
156 Data dictionary Kamusi ya data
157 Preview: Hakikisho:
158 Imported data set Seti ya data iliyoingizwa
160 Specify the data format Bainisha umbizo la data
161 Fill missing values? Jaza thamani zinazokosekana?
162 Requested data was retrieved! Data iliyoombwa ilipatikana!
Data retrieved, but it looks like only the ID was retrieved from the server. Please check with your REDCap administrator that you have required permissions for data access. Data imerejeshwa, lakini inaonekana ni kitambulisho pekee kilichorejeshwa kutoka kwa seva. Tafadhali wasiliana na msimamizi wako wa REDCap kama una ruhusa zinazohitajika kwa ufikiaji wa data.
Data retrieved, but it looks like not all requested fields were retrieved from the server. Please check with your REDCap administrator that you have required permissions for data access. Data imerejeshwa, lakini inaonekana kama si sehemu zote zilizoombwa zilizorejeshwa kutoka kwa seva. Tafadhali wasiliana na msimamizi wako wa REDCap kama una ruhusa zinazohitajika kwa ufikiaji wa data.
163 Click to see the imported data Bofya ili kuona data iliyoingizwa
164 Regression table Jedwali la urejeshaji
165 Import a dataset from an environment Ingiza seti ya data kutoka kwa mazingira
284 No data present. No data present.
285 You have provided a complete dataset with no missing values. You have provided a complete dataset with no missing values.
286 Start by loading data. Start by loading data.
Create a new variable; otherwise replaces (Updating labels always creates new variable) Create a new variable; otherwise replaces (Updating labels always creates new variable)
287 Data classes and missing observations Data classes and missing observations
288 We encountered the following error showing missingness: We encountered the following error showing missingness:
289 Please confirm data reset! Please confirm data reset!
315 Settings Settings
316 Create new factor Create new factor
317 Choose color palette Choose color palette
318 Optional filter logic (e.g., ⁠[gender] = 'female') Optional filter logic (e.g., ⁠[gender] = 'female')
319 Drop empty Drop empty
320 Choose variable: Choose variable:
321 An empty data set was imported. Please review data filter. An empty data set was imported. Please review data filter.
322 An error was encountered exporting data. Please review data filter. An error was encountered exporting data. Please review data filter.
323 Likert diagram Likert diagram

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