From 74c22aeba610da7d86bf51f94e4de82452e38e52 Mon Sep 17 00:00:00 2001 From: agdamsbo Date: Thu, 12 Mar 2026 12:18:55 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20agdamsbo?= =?UTF-8?q?/FreesearchR@9e2ee1e40290a27d6e53e82dea8ddc74404cdd53=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- CODE_OF_CONDUCT.html | 2 +- LICENSE.html | 2 +- QA.html | 2 +- ROADMAP.html | 2 +- SESSION.html | 2 +- articles/FreesearchR.html | 2 +- articles/data-types.html | 2 +- articles/missingness.html | 2 +- articles/session.html | 2 +- articles/visuals.html | 2 +- authors.html | 2 +- authors.md | 2 +- index.html | 4 ++-- index.md | 16 +++++++++------- llms.txt | 16 +++++++++------- news/index.html | 3 ++- news/index.md | 2 ++ pkgdown.yml | 2 +- reference/FreesearchR_palette.html | 2 +- reference/FreesearchR_theme.html | 2 +- reference/add_class_icon.html | 2 +- reference/add_sparkline.html | 2 +- reference/align_axes.html | 2 +- reference/all_but.html | 2 +- reference/append_column.html | 2 +- reference/append_list.html | 2 +- reference/apply_labels.html | 2 +- reference/argsstring2list.html | 2 +- reference/baseline_table.html | 2 +- reference/class_icons.html | 2 +- reference/clean_common_axis.html | 2 +- reference/clean_date.html | 2 +- reference/clean_sep.html | 2 +- reference/collapse_spaces.html | 2 +- reference/columnSelectInput.html | 2 +- reference/compare_missings.html | 2 +- reference/contrast_text.html | 2 +- reference/corr_pairs_validate.html | 2 +- reference/correlation_pairs.html | 2 +- reference/create-column.html | 2 +- reference/create_baseline.html | 2 +- reference/create_log_tics.html | 2 +- reference/create_overview_datagrid.html | 2 +- reference/cut-variable.html | 2 +- reference/cut_methods.html | 2 +- reference/cut_var.html | 2 +- reference/data-correlations.html | 2 +- reference/data-missings.html | 2 +- reference/data-plots.html | 4 ++-- reference/data-plots.md | 2 +- reference/data-summary.html | 2 +- reference/data_description.html | 2 +- reference/data_summary_gather.html | 2 +- reference/data_type.html | 2 +- reference/data_type_filter.html | 2 +- reference/data_types.html | 2 +- reference/default_format_arguments.html | 2 +- reference/default_parsing.html | 2 +- reference/detect_delimiter.html | 2 +- reference/dim_change_call.html | 2 +- reference/drop_empty_event.html | 2 +- reference/expression_string.html | 2 +- reference/extract_labels.html | 2 +- reference/factor_new_levels_labels.html | 2 +- reference/factorize.html | 2 +- reference/file_export.html | 2 +- reference/format_writer.html | 2 +- reference/get_data_packages.html | 2 +- reference/get_dimensions.html | 2 +- reference/get_fun_options.html | 2 +- reference/get_label.html | 2 +- reference/get_list_elements.html | 2 +- reference/get_plot_options.html | 2 +- reference/get_var_icon.html | 2 +- reference/getfun.html | 4 ++-- reference/getfun.md | 2 +- reference/gg_theme_export.html | 2 +- reference/gg_theme_shiny.html | 2 +- reference/ggeulerr.html | 2 +- reference/grepl_fix.html | 2 +- reference/if_not_missing.html | 2 +- reference/import-file-type.html | 2 +- reference/import-file.html | 2 +- reference/import-file_module.html | 2 +- reference/import-globalenv.html | 2 +- reference/index_embed.html | 2 +- reference/is_any_class.html | 2 +- reference/is_consecutive.html | 2 +- reference/is_datetime.html | 2 +- reference/is_identical_to_previous.html | 2 +- reference/is_splittable.html | 2 +- reference/is_valid_redcap_url.html | 2 +- reference/is_valid_token.html | 2 +- reference/label_report.html | 2 +- reference/landing_page_ui.html | 2 +- reference/launch_FreesearchR.html | 2 +- reference/limit_data_size.html | 2 +- reference/limit_log.html | 2 +- reference/line_break.html | 2 +- reference/list_pkg_data.html | 2 +- reference/make_validation.html | 2 +- reference/make_validation_alerts.html | 2 +- reference/mcar_validate.html | 2 +- reference/merge_expression.html | 2 +- reference/merge_long.html | 2 +- reference/missing_fraction.html | 2 +- reference/missings_logic_across.html | 2 +- reference/missings_validate.html | 2 +- reference/modify_qmd.html | 2 +- reference/names2val.html | 2 +- reference/obs_filter_validate.html | 2 +- reference/overview_vars.html | 2 +- reference/pipe_string.html | 2 +- reference/plot.tbl_regression.html | 2 +- reference/plot_euler.html | 2 +- reference/plot_euler_single.html | 2 +- reference/plot_sankey_single.html | 2 +- reference/possible_functions.html | 2 +- reference/possible_plots.html | 2 +- reference/read_input.html | 2 +- reference/redcap_read_shiny_module.html | 2 +- reference/regression_model.html | 2 +- reference/regression_table.html | 2 +- reference/regression_table_create.html | 2 +- reference/remove_empty_attr.html | 2 +- reference/remove_empty_cols.html | 2 +- reference/remove_nested_list.html | 2 +- reference/repeated_instruments.html | 2 +- reference/restore_labels.html | 2 +- reference/selectInputIcon.html | 2 +- reference/separate_string.html | 2 +- reference/set_column_label.html | 2 +- reference/show_data.html | 2 +- reference/simple_snake.html | 2 +- reference/sort_by.html | 2 +- reference/specify_qmd_format.html | 2 +- reference/split-string.html | 2 +- reference/subset_types.html | 2 +- reference/supported_functions.html | 2 +- reference/supported_plots.html | 2 +- reference/symmetrical_scale_x_log10.html | 2 +- reference/tbl_merge.html | 2 +- reference/type_icons.html | 2 +- reference/ui_elements.html | 2 +- reference/unique_names.html | 2 +- reference/unique_short.html | 2 +- reference/update-factor.html | 2 +- reference/update-variables.html | 2 +- reference/update_variables_datagrid.html | 2 +- reference/validation.html | 2 +- reference/validation_lib.html | 2 +- reference/vars_filter_validate.html | 2 +- reference/vectorSelectInput.html | 2 +- reference/vertical_stacked_bars.html | 2 +- reference/visual-summary.html | 2 +- reference/wide2long.html | 2 +- reference/with_labels.html | 2 +- reference/wrap_plot_list.html | 2 +- reference/write_quarto.html | 2 +- search.json | 2 +- 160 files changed, 181 insertions(+), 174 deletions(-) diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index 6d2eebe4..94e75d2f 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -38,7 +38,7 @@

Contributor Covenant Code of Conduct

- Source: CODE_OF_CONDUCT.md + Source: CODE_OF_CONDUCT.md
diff --git a/LICENSE.html b/LICENSE.html index 2ae1cd61..346d6434 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -38,7 +38,7 @@

GNU Affero General Public License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/QA.html b/QA.html index 2bd8022a..42f355ef 100644 --- a/QA.html +++ b/QA.html @@ -38,7 +38,7 @@

Questions and answers

- Source: QA.md + Source: QA.md
diff --git a/ROADMAP.html b/ROADMAP.html index 553277f8..849baaff 100644 --- a/ROADMAP.html +++ b/ROADMAP.html @@ -38,7 +38,7 @@

Project roadmap

- Source: ROADMAP.md + Source: ROADMAP.md
diff --git a/SESSION.html b/SESSION.html index 03b6a050..732a8106 100644 --- a/SESSION.html +++ b/SESSION.html @@ -38,7 +38,7 @@

NA

- Source: SESSION.md + Source: SESSION.md
diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html index 81ddce76..2511027c 100644 --- a/articles/FreesearchR.html +++ b/articles/FreesearchR.html @@ -73,7 +73,7 @@

FreesearchR

- Source: vignettes/FreesearchR.Rmd + Source: vignettes/FreesearchR.Rmd
FreesearchR.Rmd
diff --git a/articles/data-types.html b/articles/data-types.html index 4db39894..76f983e3 100644 --- a/articles/data-types.html +++ b/articles/data-types.html @@ -73,7 +73,7 @@

Data types

- Source: vignettes/data-types.Rmd + Source: vignettes/data-types.Rmd
data-types.Rmd
diff --git a/articles/missingness.html b/articles/missingness.html index 369155b4..1aa732f4 100644 --- a/articles/missingness.html +++ b/articles/missingness.html @@ -73,7 +73,7 @@

Missingness in data

- Source: vignettes/missingness.Rmd + Source: vignettes/missingness.Rmd
missingness.Rmd
diff --git a/articles/session.html b/articles/session.html index 12ea9305..2040d756 100644 --- a/articles/session.html +++ b/articles/session.html @@ -73,7 +73,7 @@

Session info

- Source: vignettes/session.Rmd + Source: vignettes/session.Rmd
session.Rmd
diff --git a/articles/visuals.html b/articles/visuals.html index 5ad387ad..64032f2d 100644 --- a/articles/visuals.html +++ b/articles/visuals.html @@ -73,7 +73,7 @@

On visuals

- Source: vignettes/visuals.Rmd + Source: vignettes/visuals.Rmd
visuals.Rmd
diff --git a/authors.html b/authors.html index 10d140e2..79e79e1c 100644 --- a/authors.html +++ b/authors.html @@ -59,7 +59,7 @@

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Damsbo A (2026). FreesearchR: Easy data analysis for clinicians. diff --git a/authors.md b/authors.md index 31e3fe6d..01a4665b 100644 --- a/authors.md +++ b/authors.md @@ -12,7 +12,7 @@ ## Citation Source: -[`DESCRIPTION`](https://github.com/agdamsbo/FreesearchR/blob/main/DESCRIPTION) +[`DESCRIPTION`](https://github.com/agdamsbo/FreesearchR/blob/v26.3.3/DESCRIPTION) Damsbo A (2026). *FreesearchR: Easy data analysis for clinicians*. R package version 26.3.3, . diff --git a/index.html b/index.html index 970f36ae..8cf2172c 100644 --- a/index.html +++ b/index.html @@ -126,7 +126,7 @@ DATA_LIMIT_UPPER -Maximum number of observations a user can set for the upper limit +Maximum number of observations a user can set for the upper limit. If set to 0, no uppper limit is applied. 100,000 @@ -154,7 +154,7 @@ launch_FreesearchR(INCLUDE_GLOBALENV=TRUE)

-

All the variables specified above can also be passed to the app on launch from R.

+

All the variables specified above can also be passed to the app on launch from R. Set DATA_LIMIT_UPPER=0 to remove upper data limit. This limit is set to protect the online app version from choking and crashing on large data sets.

Running with Docker Compose diff --git a/index.md b/index.md index 4f5a2f75..8eb18eca 100644 --- a/index.md +++ b/index.md @@ -47,12 +47,12 @@ values are provided, the app will use the defaults listed below. **Configuration Variables** -| Variable | Description | Default | -|----------------------|-------------------------------------------------------------------------|-----------| -| `INCLUDE_GLOBALENV` | Load datasets already present in the global R environment into the app | `FALSE` | -| `DATA_LIMIT_DEFAULT` | Default number of observations for previewing or working with a dataset | `10,000` | -| `DATA_LIMIT_UPPER` | Maximum number of observations a user can set for the upper limit | `100,000` | -| `DATA_LIMIT_LOWER` | Minimum number of observations a user can set for the lower limit | `1` | +| Variable | Description | Default | +|----------------------|-------------------------------------------------------------------------------------------------------------|-----------| +| `INCLUDE_GLOBALENV` | Load datasets already present in the global R environment into the app | `FALSE` | +| `DATA_LIMIT_DEFAULT` | Default number of observations for previewing or working with a dataset | `10,000` | +| `DATA_LIMIT_UPPER` | Maximum number of observations a user can set for the upper limit. If set to 0, no uppper limit is applied. | `100,000` | +| `DATA_LIMIT_LOWER` | Minimum number of observations a user can set for the lower limit | `1` | ### Run from R (or RStudio) @@ -77,7 +77,9 @@ tool for exploratory analysis. ``` All the variables specified above can also be passed to the app on -launch from R. +launch from R. Set DATA_LIMIT_UPPER=0 to remove upper data limit. This +limit is set to protect the online app version from choking and crashing +on large data sets. ### Running with Docker Compose diff --git a/llms.txt b/llms.txt index 6611cd97..ff6bb63b 100644 --- a/llms.txt +++ b/llms.txt @@ -47,12 +47,12 @@ values are provided, the app will use the defaults listed below. **Configuration Variables** -| Variable | Description | Default | -|----------------------|-------------------------------------------------------------------------|-----------| -| `INCLUDE_GLOBALENV` | Load datasets already present in the global R environment into the app | `FALSE` | -| `DATA_LIMIT_DEFAULT` | Default number of observations for previewing or working with a dataset | `10,000` | -| `DATA_LIMIT_UPPER` | Maximum number of observations a user can set for the upper limit | `100,000` | -| `DATA_LIMIT_LOWER` | Minimum number of observations a user can set for the lower limit | `1` | +| Variable | Description | Default | +|----------------------|-------------------------------------------------------------------------------------------------------------|-----------| +| `INCLUDE_GLOBALENV` | Load datasets already present in the global R environment into the app | `FALSE` | +| `DATA_LIMIT_DEFAULT` | Default number of observations for previewing or working with a dataset | `10,000` | +| `DATA_LIMIT_UPPER` | Maximum number of observations a user can set for the upper limit. If set to 0, no uppper limit is applied. | `100,000` | +| `DATA_LIMIT_LOWER` | Minimum number of observations a user can set for the lower limit | `1` | ### Run from R (or RStudio) @@ -77,7 +77,9 @@ tool for exploratory analysis. ``` All the variables specified above can also be passed to the app on -launch from R. +launch from R. Set DATA_LIMIT_UPPER=0 to remove upper data limit. This +limit is set to protect the online app version from choking and crashing +on large data sets. ### Running with Docker Compose diff --git a/news/index.html b/news/index.html index b9850336..b291c705 100644 --- a/news/index.html +++ b/news/index.html @@ -38,13 +38,14 @@

Changelog

- Source: NEWS.md + Source: NEWS.md

FreesearchR 26.3.3

NEW option to pass global settings when running as docker or launching from R. Support for INCLUDE_GLOBALENV, DATA_LIMIT_DEFAULT, DATA_LIMIT_UPPER and DATA_LIMIT_LOWER. Described in the README.

FIX faster data description function.

+

Also added a few tests to the package.

FreesearchR 26.3.2

diff --git a/news/index.md b/news/index.md index 827d7b84..3ac9af64 100644 --- a/news/index.md +++ b/news/index.md @@ -8,6 +8,8 @@ DATA_LIMIT_UPPER and DATA_LIMIT_LOWER. Described in the README. *FIX* faster data description function. +Also added a few tests to the package. + ## FreesearchR 26.3.2 *FIX* Updating factor levels always created new factor. diff --git a/pkgdown.yml b/pkgdown.yml index f17b6b0f..10741568 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -7,7 +7,7 @@ articles: missingness: missingness.html session: session.html visuals: visuals.html -last_built: 2026-03-12T11:58Z +last_built: 2026-03-12T12:17Z urls: reference: https://agdamsbo.github.io/FreesearchR/reference article: https://agdamsbo.github.io/FreesearchR/articles diff --git a/reference/FreesearchR_palette.html b/reference/FreesearchR_palette.html index 7860ba77..d3d88432 100644 --- a/reference/FreesearchR_palette.html +++ b/reference/FreesearchR_palette.html @@ -38,7 +38,7 @@

Use the FreesearchR colors

- Source: R/theme.R + Source: R/theme.R
FreesearchR_palette.Rd
diff --git a/reference/FreesearchR_theme.html b/reference/FreesearchR_theme.html index d407dd8a..5147d28f 100644 --- a/reference/FreesearchR_theme.html +++ b/reference/FreesearchR_theme.html @@ -38,7 +38,7 @@

Custom theme based on unity

- Source: R/theme.R + Source: R/theme.R
FreesearchR_theme.Rd
diff --git a/reference/add_class_icon.html b/reference/add_class_icon.html index b121667d..9539d416 100644 --- a/reference/add_class_icon.html +++ b/reference/add_class_icon.html @@ -38,7 +38,7 @@

Convert class grid column to icon

- Source: R/data-summary.R + Source: R/data-summary.R
add_class_icon.Rd
diff --git a/reference/add_sparkline.html b/reference/add_sparkline.html index 0c20ea28..1dac2146 100644 --- a/reference/add_sparkline.html +++ b/reference/add_sparkline.html @@ -38,7 +38,7 @@

Add sparkline to datagrid

- Source: R/data-summary.R + Source: R/data-summary.R
add_sparkline.Rd
diff --git a/reference/align_axes.html b/reference/align_axes.html index bade88d7..8ac61fa3 100644 --- a/reference/align_axes.html +++ b/reference/align_axes.html @@ -38,7 +38,7 @@

Aligns axes between plots

- Source: R/data_plots.R + Source: R/data_plots.R
align_axes.Rd
diff --git a/reference/all_but.html b/reference/all_but.html index 670aea7d..ca63c708 100644 --- a/reference/all_but.html +++ b/reference/all_but.html @@ -38,7 +38,7 @@

Select all from vector but

- Source: R/data_plots.R + Source: R/data_plots.R
all_but.Rd
diff --git a/reference/append_column.html b/reference/append_column.html index 1be7b98e..29dc57e2 100644 --- a/reference/append_column.html +++ b/reference/append_column.html @@ -38,7 +38,7 @@

Append a column to a data.frame

- Source: R/helpers.R + Source: R/helpers.R
append_column.Rd
diff --git a/reference/append_list.html b/reference/append_list.html index 1a4b1de7..ce57f87e 100644 --- a/reference/append_list.html +++ b/reference/append_list.html @@ -38,7 +38,7 @@

Append list with named index

- Source: R/helpers.R + Source: R/helpers.R
append_list.Rd
diff --git a/reference/apply_labels.html b/reference/apply_labels.html index fda67325..bbe98265 100644 --- a/reference/apply_labels.html +++ b/reference/apply_labels.html @@ -38,7 +38,7 @@

Apply a named label vector to a data frame

- Source: R/utils-labels.R + Source: R/utils-labels.R
apply_labels.Rd
diff --git a/reference/argsstring2list.html b/reference/argsstring2list.html index 65e4c2b5..746ff559 100644 --- a/reference/argsstring2list.html +++ b/reference/argsstring2list.html @@ -38,7 +38,7 @@

Convert string of arguments to list of arguments

- Source: R/helpers.R + Source: R/helpers.R
argsstring2list.Rd
diff --git a/reference/baseline_table.html b/reference/baseline_table.html index 3fd026ee..39cc8f7c 100644 --- a/reference/baseline_table.html +++ b/reference/baseline_table.html @@ -38,7 +38,7 @@

Print a flexible baseline characteristics table

- Source: R/baseline_table.R + Source: R/baseline_table.R
baseline_table.Rd
diff --git a/reference/class_icons.html b/reference/class_icons.html index 17840c3a..d38ff77c 100644 --- a/reference/class_icons.html +++ b/reference/class_icons.html @@ -38,7 +38,7 @@

Get data class icons

- Source: R/data-summary.R + Source: R/data-summary.R
class_icons.Rd
diff --git a/reference/clean_common_axis.html b/reference/clean_common_axis.html index a28341c0..2d9c6c4a 100644 --- a/reference/clean_common_axis.html +++ b/reference/clean_common_axis.html @@ -38,7 +38,7 @@

Extract and clean axis ranges

- Source: R/data_plots.R + Source: R/data_plots.R
clean_common_axis.Rd
diff --git a/reference/clean_date.html b/reference/clean_date.html index 29cf6b4d..d8274b2f 100644 --- a/reference/clean_date.html +++ b/reference/clean_date.html @@ -38,7 +38,7 @@

Attempts at applying uniform date format

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
clean_date.Rd
diff --git a/reference/clean_sep.html b/reference/clean_sep.html index 7db20f48..2d841b8c 100644 --- a/reference/clean_sep.html +++ b/reference/clean_sep.html @@ -38,7 +38,7 @@

gsub wrapper for piping with default values for separator substituting

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
clean_sep.Rd
diff --git a/reference/collapse_spaces.html b/reference/collapse_spaces.html index 0443c03d..71c2d33f 100644 --- a/reference/collapse_spaces.html +++ b/reference/collapse_spaces.html @@ -40,7 +40,7 @@ but it works">

Substitue spaces/tabs with single space excluding text within quotes

- Source: R/helpers.R + Source: R/helpers.R
collapse_spaces.Rd
diff --git a/reference/columnSelectInput.html b/reference/columnSelectInput.html index 8aeb5655..dcfe1cf5 100644 --- a/reference/columnSelectInput.html +++ b/reference/columnSelectInput.html @@ -40,7 +40,7 @@ Adds the option to select "none" which is handled later'>

A selectizeInput customized for data frames with column labels

- Source: R/custom_SelectInput.R + Source: R/custom_SelectInput.R
columnSelectInput.Rd
diff --git a/reference/compare_missings.html b/reference/compare_missings.html index 3daefb39..82e2b228 100644 --- a/reference/compare_missings.html +++ b/reference/compare_missings.html @@ -38,7 +38,7 @@

Pairwise comparison of missings across covariables

- Source: R/missings-module.R + Source: R/missings-module.R
compare_missings.Rd
diff --git a/reference/contrast_text.html b/reference/contrast_text.html index 2ddccbc7..494b35b2 100644 --- a/reference/contrast_text.html +++ b/reference/contrast_text.html @@ -40,7 +40,7 @@ background color.">

Contrast Text Color

- Source: R/contrast_text.R + Source: R/contrast_text.R
contrast_text.Rd
diff --git a/reference/corr_pairs_validate.html b/reference/corr_pairs_validate.html index ef4b0074..0c8d7aa5 100644 --- a/reference/corr_pairs_validate.html +++ b/reference/corr_pairs_validate.html @@ -38,7 +38,7 @@

Correlation pairs validation

- Source: R/validation.R + Source: R/validation.R
corr_pairs_validate.Rd
diff --git a/reference/correlation_pairs.html b/reference/correlation_pairs.html index 6a1e3d4a..df19965b 100644 --- a/reference/correlation_pairs.html +++ b/reference/correlation_pairs.html @@ -38,7 +38,7 @@

Determine significant correlations in the data set

- Source: R/correlations-module.R + Source: R/correlations-module.R
correlation_pairs.Rd
diff --git a/reference/create-column.html b/reference/create-column.html index 86e4c495..d2dd867c 100644 --- a/reference/create-column.html +++ b/reference/create-column.html @@ -38,7 +38,7 @@

Create new column

- Source: R/create-column-mod.R + Source: R/create-column-mod.R
create-column.Rd
diff --git a/reference/create_baseline.html b/reference/create_baseline.html index 7e23d6cb..5e304b87 100644 --- a/reference/create_baseline.html +++ b/reference/create_baseline.html @@ -38,7 +38,7 @@

Create a baseline table

- Source: R/baseline_table.R + Source: R/baseline_table.R
create_baseline.Rd
diff --git a/reference/create_log_tics.html b/reference/create_log_tics.html index d5dd3cc0..a3c502bb 100644 --- a/reference/create_log_tics.html +++ b/reference/create_log_tics.html @@ -38,7 +38,7 @@

Create summetric log ticks

- Source: R/regression_plot.R + Source: R/regression_plot.R
create_log_tics.Rd
diff --git a/reference/create_overview_datagrid.html b/reference/create_overview_datagrid.html index 80da87bc..adb2e92a 100644 --- a/reference/create_overview_datagrid.html +++ b/reference/create_overview_datagrid.html @@ -38,7 +38,7 @@

Create a data overview datagrid

- Source: R/data-summary.R + Source: R/data-summary.R
create_overview_datagrid.Rd
diff --git a/reference/cut-variable.html b/reference/cut-variable.html index 3c9b089b..e30ef89a 100644 --- a/reference/cut-variable.html +++ b/reference/cut-variable.html @@ -38,7 +38,7 @@

Module to Convert Numeric to Factor

- Source: R/cut-variable-ext.R + Source: R/cut-variable-ext.R
cut-variable.Rd
diff --git a/reference/cut_methods.html b/reference/cut_methods.html index 8251343a..c462a68d 100644 --- a/reference/cut_methods.html +++ b/reference/cut_methods.html @@ -38,7 +38,7 @@

Library of cut methods with descriptions

- Source: R/cut-variable-ext.R + Source: R/cut-variable-ext.R
cut_methods.Rd
diff --git a/reference/cut_var.html b/reference/cut_var.html index 1539ea41..a66d25c1 100644 --- a/reference/cut_var.html +++ b/reference/cut_var.html @@ -42,7 +42,7 @@ Subset first part of string to factor">

Extended cutting function with fall-back to the native base::cut

- Source: R/cut_var.R + Source: R/cut_var.R
cut_var.Rd
diff --git a/reference/data-correlations.html b/reference/data-correlations.html index 046a19af..67e8c55e 100644 --- a/reference/data-correlations.html +++ b/reference/data-correlations.html @@ -38,7 +38,7 @@

Data correlations evaluation module

- Source: R/correlations-module.R + Source: R/correlations-module.R
data-correlations.Rd
diff --git a/reference/data-missings.html b/reference/data-missings.html index 50c65daf..cc5957e2 100644 --- a/reference/data-missings.html +++ b/reference/data-missings.html @@ -38,7 +38,7 @@

Data correlations evaluation module

- Source: R/missings-module.R + Source: R/missings-module.R
data-missings.Rd
diff --git a/reference/data-plots.html b/reference/data-plots.html index 8803597f..44eeb515 100644 --- a/reference/data-plots.html +++ b/reference/data-plots.html @@ -58,7 +58,7 @@ Beatiful violin plot">

Data correlations evaluation module

- Source: R/data_plots.R, R/plot_bar.R, R/plot_box.R, and 5 more + Source: R/data_plots.R, R/plot_bar.R, R/plot_box.R, and 5 more
data-plots.Rd
@@ -732,7 +732,7 @@ One of c("stack", "dodge", "fill")

#> list() #> #> $plot_env -#> <environment: 0x55ab174a7ad8> +#> <environment: 0x559cd394a3f0> #> #> $code #> FreesearchR::plot_violin(pri = "mpg", sec = "cyl", ter = NULL) diff --git a/reference/data-plots.md b/reference/data-plots.md index c4629b3d..97ffe34e 100644 --- a/reference/data-plots.md +++ b/reference/data-plots.md @@ -688,7 +688,7 @@ create_plot(mtcars, "plot_violin", "mpg", "cyl") |> attributes() #> list() #> #> $plot_env -#> +#> #> #> $code #> FreesearchR::plot_violin(pri = "mpg", sec = "cyl", ter = NULL) diff --git a/reference/data-summary.html b/reference/data-summary.html index f1f14913..d3bce97a 100644 --- a/reference/data-summary.html +++ b/reference/data-summary.html @@ -38,7 +38,7 @@

Data summary module

- Source: R/data-summary.R + Source: R/data-summary.R
data-summary.Rd
diff --git a/reference/data_description.html b/reference/data_description.html index 59de1527..8e804925 100644 --- a/reference/data_description.html +++ b/reference/data_description.html @@ -38,7 +38,7 @@

Ultra short data dascription

- Source: R/helpers.R + Source: R/helpers.R
data_description.Rd
diff --git a/reference/data_summary_gather.html b/reference/data_summary_gather.html index e6ed8884..8a44d8e8 100644 --- a/reference/data_summary_gather.html +++ b/reference/data_summary_gather.html @@ -38,7 +38,7 @@

Data summary for printing visual summary

- Source: R/visual_summary.R + Source: R/visual_summary.R
data_summary_gather.Rd
diff --git a/reference/data_type.html b/reference/data_type.html index a92b18c3..4662dd19 100644 --- a/reference/data_type.html +++ b/reference/data_type.html @@ -40,7 +40,7 @@ meaningful "clinical" data type.'>

Data type assessment.

- Source: R/helpers.R + Source: R/helpers.R
data_type.Rd
diff --git a/reference/data_type_filter.html b/reference/data_type_filter.html index 78c9cc6f..33e31370 100644 --- a/reference/data_type_filter.html +++ b/reference/data_type_filter.html @@ -38,7 +38,7 @@

Filter function to filter data set by variable type

- Source: R/helpers.R + Source: R/helpers.R
data_type_filter.Rd
diff --git a/reference/data_types.html b/reference/data_types.html index fca22b2c..a1e7c1ff 100644 --- a/reference/data_types.html +++ b/reference/data_types.html @@ -38,7 +38,7 @@

Recognised data types from data_type

- Source: R/helpers.R + Source: R/helpers.R
data_types.Rd
diff --git a/reference/default_format_arguments.html b/reference/default_format_arguments.html index 19a31b13..60798e98 100644 --- a/reference/default_format_arguments.html +++ b/reference/default_format_arguments.html @@ -38,7 +38,7 @@

Defaults qmd formats

- Source: R/report.R + Source: R/report.R
default_format_arguments.Rd
diff --git a/reference/default_parsing.html b/reference/default_parsing.html index 1289072d..86c2bc33 100644 --- a/reference/default_parsing.html +++ b/reference/default_parsing.html @@ -38,7 +38,7 @@

Default data parsing

- Source: R/helpers.R + Source: R/helpers.R
default_parsing.Rd
diff --git a/reference/detect_delimiter.html b/reference/detect_delimiter.html index 60d1b1a6..a1821731 100644 --- a/reference/detect_delimiter.html +++ b/reference/detect_delimiter.html @@ -38,7 +38,7 @@

Detect delimiters in string based on allowed delimiters

- Source: R/separate_string.R + Source: R/separate_string.R
detect_delimiter.Rd
diff --git a/reference/dim_change_call.html b/reference/dim_change_call.html index 39ab32f8..fc1f166c 100644 --- a/reference/dim_change_call.html +++ b/reference/dim_change_call.html @@ -38,7 +38,7 @@

Dimensions validation

- Source: R/validation.R + Source: R/validation.R
dim_change_call.Rd
diff --git a/reference/drop_empty_event.html b/reference/drop_empty_event.html index 3d4c9f12..5f0f8671 100644 --- a/reference/drop_empty_event.html +++ b/reference/drop_empty_event.html @@ -38,7 +38,7 @@

Drop empty events from REDCap export

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
drop_empty_event.Rd
diff --git a/reference/expression_string.html b/reference/expression_string.html index d5a4874c..a3aefa9c 100644 --- a/reference/expression_string.html +++ b/reference/expression_string.html @@ -38,7 +38,7 @@

Deparses expression as string, substitutes native pipe and adds assign

- Source: R/helpers.R + Source: R/helpers.R
expression_string.Rd
diff --git a/reference/extract_labels.html b/reference/extract_labels.html index fbb5f8c0..18ece639 100644 --- a/reference/extract_labels.html +++ b/reference/extract_labels.html @@ -38,7 +38,7 @@

Extract column labels from a data frame

- Source: R/utils-labels.R + Source: R/utils-labels.R
extract_labels.Rd
diff --git a/reference/factor_new_levels_labels.html b/reference/factor_new_levels_labels.html index 42465a75..b7334e11 100644 --- a/reference/factor_new_levels_labels.html +++ b/reference/factor_new_levels_labels.html @@ -38,7 +38,7 @@

Simple function to apply new levels and/or labels to factor

- Source: R/update-factor-ext.R + Source: R/update-factor-ext.R
factor_new_levels_labels.Rd
diff --git a/reference/factorize.html b/reference/factorize.html index 5ba9bb36..59ad27fa 100644 --- a/reference/factorize.html +++ b/reference/factorize.html @@ -38,7 +38,7 @@

Factorize variables in data.frame

- Source: R/helpers.R + Source: R/helpers.R
factorize.Rd
diff --git a/reference/file_export.html b/reference/file_export.html index 950edb74..3ee078b8 100644 --- a/reference/file_export.html +++ b/reference/file_export.html @@ -38,7 +38,7 @@

Title

- Source: R/helpers.R + Source: R/helpers.R
file_export.Rd
diff --git a/reference/format_writer.html b/reference/format_writer.html index 9c33e24b..8a6385e2 100644 --- a/reference/format_writer.html +++ b/reference/format_writer.html @@ -38,7 +38,7 @@

Merges list of named arguments for qmd header generation

- Source: R/report.R + Source: R/report.R
format_writer.Rd
diff --git a/reference/get_data_packages.html b/reference/get_data_packages.html index b273eeb0..54332b37 100644 --- a/reference/get_data_packages.html +++ b/reference/get_data_packages.html @@ -38,7 +38,7 @@

Get packages containing datasets

- Source: R/import_globalenv-ext.R + Source: R/import_globalenv-ext.R
get_data_packages.Rd
diff --git a/reference/get_dimensions.html b/reference/get_dimensions.html index 82e88ff9..d3403bd2 100644 --- a/reference/get_dimensions.html +++ b/reference/get_dimensions.html @@ -38,7 +38,7 @@

Extension of the helper function from datamods

- Source: R/import_globalenv-ext.R + Source: R/import_globalenv-ext.R
get_dimensions.Rd
diff --git a/reference/get_fun_options.html b/reference/get_fun_options.html index 9af09170..5342ea99 100644 --- a/reference/get_fun_options.html +++ b/reference/get_fun_options.html @@ -38,7 +38,7 @@

Get the function options based on the selected function description

- Source: R/regression_model.R + Source: R/regression_model.R
get_fun_options.Rd
diff --git a/reference/get_label.html b/reference/get_label.html index df5d37d4..920dfc6a 100644 --- a/reference/get_label.html +++ b/reference/get_label.html @@ -38,7 +38,7 @@

Print label, and if missing print variable name for plots

- Source: R/data_plots.R + Source: R/data_plots.R
get_label.Rd
diff --git a/reference/get_list_elements.html b/reference/get_list_elements.html index 8841cd4c..1e1f2ade 100644 --- a/reference/get_list_elements.html +++ b/reference/get_list_elements.html @@ -38,7 +38,7 @@

Subset elements from list of lists

- Source: R/cut-variable-ext.R + Source: R/cut-variable-ext.R
get_list_elements.Rd
diff --git a/reference/get_plot_options.html b/reference/get_plot_options.html index c1872b35..9450cb5d 100644 --- a/reference/get_plot_options.html +++ b/reference/get_plot_options.html @@ -38,7 +38,7 @@

Get the function options based on the selected function description

- Source: R/data_plots.R + Source: R/data_plots.R
get_plot_options.Rd
diff --git a/reference/get_var_icon.html b/reference/get_var_icon.html index a0871753..dcee71a5 100644 --- a/reference/get_var_icon.html +++ b/reference/get_var_icon.html @@ -38,7 +38,7 @@

Easily get variable icon based on data type or class

- Source: R/data-summary.R + Source: R/data-summary.R
get_var_icon.Rd
diff --git a/reference/getfun.html b/reference/getfun.html index ded9edcb..826550ee 100644 --- a/reference/getfun.html +++ b/reference/getfun.html @@ -38,7 +38,7 @@

Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'

- Source: R/helpers.R + Source: R/helpers.R
getfun.Rd
@@ -139,7 +139,7 @@ #> z$qr <- NULL #> z #> } -#> <bytecode: 0x55ab19d19e08> +#> <bytecode: 0x559cd171a190> #> <environment: namespace:stats>
diff --git a/reference/getfun.md b/reference/getfun.md index f8d1dce7..87d2f500 100644 --- a/reference/getfun.md +++ b/reference/getfun.md @@ -95,6 +95,6 @@ getfun("stats::lm") #> z$qr <- NULL #> z #> } -#> +#> #> ``` diff --git a/reference/gg_theme_export.html b/reference/gg_theme_export.html index aa56b9c0..8b5b8be5 100644 --- a/reference/gg_theme_export.html +++ b/reference/gg_theme_export.html @@ -38,7 +38,7 @@

GGplot default theme for plotting export objects

- Source: R/theme.R + Source: R/theme.R
gg_theme_export.Rd
diff --git a/reference/gg_theme_shiny.html b/reference/gg_theme_shiny.html index 685eb6b5..68299660 100644 --- a/reference/gg_theme_shiny.html +++ b/reference/gg_theme_shiny.html @@ -38,7 +38,7 @@

GGplot default theme for plotting in Shiny

- Source: R/theme.R + Source: R/theme.R
gg_theme_shiny.Rd
diff --git a/reference/ggeulerr.html b/reference/ggeulerr.html index c489ec86..fad0808c 100644 --- a/reference/ggeulerr.html +++ b/reference/ggeulerr.html @@ -42,7 +42,7 @@ but plots it using ggplot2">

Area proportional venn diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
ggeulerr.Rd
diff --git a/reference/grepl_fix.html b/reference/grepl_fix.html index 21b20606..d47cb07f 100644 --- a/reference/grepl_fix.html +++ b/reference/grepl_fix.html @@ -38,7 +38,7 @@

Matches pattern to vector based on match type

- Source: R/wide2long.R + Source: R/wide2long.R
grepl_fix.Rd
diff --git a/reference/if_not_missing.html b/reference/if_not_missing.html index 75df563f..b316ecb9 100644 --- a/reference/if_not_missing.html +++ b/reference/if_not_missing.html @@ -38,7 +38,7 @@

Return if available

- Source: R/helpers.R + Source: R/helpers.R
if_not_missing.Rd
diff --git a/reference/import-file-type.html b/reference/import-file-type.html index e6eaf8fa..4e92c580 100644 --- a/reference/import-file-type.html +++ b/reference/import-file-type.html @@ -38,7 +38,7 @@

Wrapper to ease data file import

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file-type.Rd
diff --git a/reference/import-file.html b/reference/import-file.html index 003e819c..a98d98c7 100644 --- a/reference/import-file.html +++ b/reference/import-file.html @@ -38,7 +38,7 @@

Import data from a file

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file.Rd
diff --git a/reference/import-file_module.html b/reference/import-file_module.html index e3dc6e0a..0613c1bd 100644 --- a/reference/import-file_module.html +++ b/reference/import-file_module.html @@ -38,7 +38,7 @@

Test app for the import_file module

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file_module.Rd
diff --git a/reference/import-globalenv.html b/reference/import-globalenv.html index 8dfb0f59..bb19bb7c 100644 --- a/reference/import-globalenv.html +++ b/reference/import-globalenv.html @@ -40,7 +40,7 @@ Modified from datamods">

Import data from an Environment

- Source: R/import_globalenv-ext.R + Source: R/import_globalenv-ext.R
import-globalenv.Rd
diff --git a/reference/index_embed.html b/reference/index_embed.html index 37349dbf..360e5a8e 100644 --- a/reference/index_embed.html +++ b/reference/index_embed.html @@ -38,7 +38,7 @@

Split vector by an index and embed addition

- Source: R/report.R + Source: R/report.R
index_embed.Rd
diff --git a/reference/is_any_class.html b/reference/is_any_class.html index 3b086e4b..6255f60c 100644 --- a/reference/is_any_class.html +++ b/reference/is_any_class.html @@ -38,7 +38,7 @@

Test class

- Source: R/cut_var.R + Source: R/cut_var.R
is_any_class.Rd
diff --git a/reference/is_consecutive.html b/reference/is_consecutive.html index cd82b13d..c711dd2e 100644 --- a/reference/is_consecutive.html +++ b/reference/is_consecutive.html @@ -38,7 +38,7 @@

Checks if elements in vector are equally spaced as indication of ID

- Source: R/data-summary.R + Source: R/data-summary.R
is_consecutive.Rd
diff --git a/reference/is_datetime.html b/reference/is_datetime.html index 8d8ec54a..ac11d43b 100644 --- a/reference/is_datetime.html +++ b/reference/is_datetime.html @@ -38,7 +38,7 @@

Test is date/datetime/time

- Source: R/cut_var.R + Source: R/cut_var.R
is_datetime.Rd
diff --git a/reference/is_identical_to_previous.html b/reference/is_identical_to_previous.html index db43fc75..80037949 100644 --- a/reference/is_identical_to_previous.html +++ b/reference/is_identical_to_previous.html @@ -38,7 +38,7 @@

Test if element is identical to the previous

- Source: R/helpers.R + Source: R/helpers.R
is_identical_to_previous.Rd
diff --git a/reference/is_splittable.html b/reference/is_splittable.html index 8b9fa446..a8fc2ed8 100644 --- a/reference/is_splittable.html +++ b/reference/is_splittable.html @@ -38,7 +38,7 @@

Determine if any variable in data frame character and contains recognized delimiters

- Source: R/separate_string.R + Source: R/separate_string.R
is_splittable.Rd
diff --git a/reference/is_valid_redcap_url.html b/reference/is_valid_redcap_url.html index d887ea47..9d6d03f0 100644 --- a/reference/is_valid_redcap_url.html +++ b/reference/is_valid_redcap_url.html @@ -38,7 +38,7 @@

Test if url is valid format for REDCap API

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
is_valid_redcap_url.Rd
diff --git a/reference/is_valid_token.html b/reference/is_valid_token.html index 29776d42..8a75db62 100644 --- a/reference/is_valid_token.html +++ b/reference/is_valid_token.html @@ -38,7 +38,7 @@

Validate REDCap token

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
is_valid_token.Rd
diff --git a/reference/label_report.html b/reference/label_report.html index 1b356ce5..8e4b936e 100644 --- a/reference/label_report.html +++ b/reference/label_report.html @@ -38,7 +38,7 @@

Print a tidy summary of column labels

- Source: R/utils-labels.R + Source: R/utils-labels.R
label_report.Rd
diff --git a/reference/landing_page_ui.html b/reference/landing_page_ui.html index 5b1e48b1..477d42b2 100644 --- a/reference/landing_page_ui.html +++ b/reference/landing_page_ui.html @@ -38,7 +38,7 @@

Tag list of elements for the FreesearchR landing page

- Source: R/landing_page_ui.R + Source: R/landing_page_ui.R
landing_page_ui.Rd
diff --git a/reference/launch_FreesearchR.html b/reference/launch_FreesearchR.html index e82de09d..54bb4254 100644 --- a/reference/launch_FreesearchR.html +++ b/reference/launch_FreesearchR.html @@ -38,7 +38,7 @@

Easily launch the FreesearchR app

- Source: R/launch_FreesearchR.R + Source: R/launch_FreesearchR.R
launch_FreesearchR.Rd
diff --git a/reference/limit_data_size.html b/reference/limit_data_size.html index 17725b6b..62404621 100644 --- a/reference/limit_data_size.html +++ b/reference/limit_data_size.html @@ -44,7 +44,7 @@ If limit is set to 0 or NULL, the original data set is returned.">

Limit the allowed data set size by number of cells

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
limit_data_size.Rd
diff --git a/reference/limit_log.html b/reference/limit_log.html index c454d5f7..2ad2e689 100644 --- a/reference/limit_log.html +++ b/reference/limit_log.html @@ -38,7 +38,7 @@

Easily round log scale limits for nice plots

- Source: R/regression_plot.R + Source: R/regression_plot.R
limit_log.Rd
diff --git a/reference/line_break.html b/reference/line_break.html index b14ea449..a12c408d 100644 --- a/reference/line_break.html +++ b/reference/line_break.html @@ -38,7 +38,7 @@

Line breaking at given number of characters for nicely plotting labels

- Source: R/data_plots.R + Source: R/data_plots.R
line_break.Rd
diff --git a/reference/list_pkg_data.html b/reference/list_pkg_data.html index 7d74d80f..c3693d5a 100644 --- a/reference/list_pkg_data.html +++ b/reference/list_pkg_data.html @@ -38,7 +38,7 @@

List dataset contained in a package

- Source: R/import_globalenv-ext.R + Source: R/import_globalenv-ext.R
list_pkg_data.Rd
diff --git a/reference/make_validation.html b/reference/make_validation.html index ba4559f4..c4fbf275 100644 --- a/reference/make_validation.html +++ b/reference/make_validation.html @@ -38,7 +38,7 @@

Create validation data.frame

- Source: R/validation.R + Source: R/validation.R
make_validation.Rd
diff --git a/reference/make_validation_alerts.html b/reference/make_validation_alerts.html index cf324d02..2cb740af 100644 --- a/reference/make_validation_alerts.html +++ b/reference/make_validation_alerts.html @@ -38,7 +38,7 @@

Create alert from validation data.frame

- Source: R/validation.R + Source: R/validation.R
make_validation_alerts.Rd
diff --git a/reference/mcar_validate.html b/reference/mcar_validate.html index 2166d90a..64b95573 100644 --- a/reference/mcar_validate.html +++ b/reference/mcar_validate.html @@ -38,7 +38,7 @@

MCAR validation based on a gtsummary table bady

- Source: R/validation.R + Source: R/validation.R
mcar_validate.Rd
diff --git a/reference/merge_expression.html b/reference/merge_expression.html index 08aed7be..e98f344f 100644 --- a/reference/merge_expression.html +++ b/reference/merge_expression.html @@ -38,7 +38,7 @@

Merge list of expressions

- Source: R/helpers.R + Source: R/helpers.R
merge_expression.Rd
diff --git a/reference/merge_long.html b/reference/merge_long.html index 27703bf4..f2ebc23f 100644 --- a/reference/merge_long.html +++ b/reference/merge_long.html @@ -38,7 +38,7 @@

Wrapper to pivot gtsummary table data to long for plotting

- Source: R/regression_plot.R + Source: R/regression_plot.R
merge_long.Rd
diff --git a/reference/missing_fraction.html b/reference/missing_fraction.html index b95d3b44..d2854efa 100644 --- a/reference/missing_fraction.html +++ b/reference/missing_fraction.html @@ -38,7 +38,7 @@

Get missingsness fraction

- Source: R/helpers.R + Source: R/helpers.R
missing_fraction.Rd
diff --git a/reference/missings_logic_across.html b/reference/missings_logic_across.html index c3aa68d4..b2db0379 100644 --- a/reference/missings_logic_across.html +++ b/reference/missings_logic_across.html @@ -38,7 +38,7 @@

Converting all variables to logicals by missing status

- Source: R/missings-module.R + Source: R/missings-module.R
missings_logic_across.Rd
diff --git a/reference/missings_validate.html b/reference/missings_validate.html index 08f13ffe..0eab18e0 100644 --- a/reference/missings_validate.html +++ b/reference/missings_validate.html @@ -38,7 +38,7 @@

Validate function of missingness in data

- Source: R/validation.R + Source: R/validation.R
missings_validate.Rd
diff --git a/reference/modify_qmd.html b/reference/modify_qmd.html index dce59ac6..afd516dc 100644 --- a/reference/modify_qmd.html +++ b/reference/modify_qmd.html @@ -38,7 +38,7 @@

Wrapper to modify quarto file to render specific formats

- Source: R/report.R + Source: R/report.R
modify_qmd.Rd
diff --git a/reference/names2val.html b/reference/names2val.html index dc169ef8..a63ecf1e 100644 --- a/reference/names2val.html +++ b/reference/names2val.html @@ -38,7 +38,7 @@

Set values as names and names as values

- Source: R/cut-variable-ext.R + Source: R/cut-variable-ext.R
names2val.Rd
diff --git a/reference/obs_filter_validate.html b/reference/obs_filter_validate.html index 75d5dded..4aae22ab 100644 --- a/reference/obs_filter_validate.html +++ b/reference/obs_filter_validate.html @@ -38,7 +38,7 @@

Observations filter test wrapper

- Source: R/validation.R + Source: R/validation.R
obs_filter_validate.Rd
diff --git a/reference/overview_vars.html b/reference/overview_vars.html index 7da8016f..6878b0c6 100644 --- a/reference/overview_vars.html +++ b/reference/overview_vars.html @@ -38,7 +38,7 @@

Create a data overview data.frame ready for sparklines

- Source: R/data-summary.R + Source: R/data-summary.R
overview_vars.Rd
diff --git a/reference/pipe_string.html b/reference/pipe_string.html index a80b8411..fc412be8 100644 --- a/reference/pipe_string.html +++ b/reference/pipe_string.html @@ -38,7 +38,7 @@

Reduce character vector with the native pipe operator or character string

- Source: R/helpers.R + Source: R/helpers.R
pipe_string.Rd
diff --git a/reference/plot.tbl_regression.html b/reference/plot.tbl_regression.html index 5bf37774..e74c28e0 100644 --- a/reference/plot.tbl_regression.html +++ b/reference/plot.tbl_regression.html @@ -38,7 +38,7 @@

Regression coef plot from gtsummary. Slightly modified to pass on arguments

- Source: R/regression_plot.R + Source: R/regression_plot.R
plot.tbl_regression.Rd
diff --git a/reference/plot_euler.html b/reference/plot_euler.html index baef9fa8..83c0d391 100644 --- a/reference/plot_euler.html +++ b/reference/plot_euler.html @@ -38,7 +38,7 @@

Easily plot euler diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
plot_euler.Rd
diff --git a/reference/plot_euler_single.html b/reference/plot_euler_single.html index ca3f668c..f5d1be5c 100644 --- a/reference/plot_euler_single.html +++ b/reference/plot_euler_single.html @@ -38,7 +38,7 @@

Easily plot single euler diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
plot_euler_single.Rd
diff --git a/reference/plot_sankey_single.html b/reference/plot_sankey_single.html index d581cbd4..5e699943 100644 --- a/reference/plot_sankey_single.html +++ b/reference/plot_sankey_single.html @@ -38,7 +38,7 @@

Beautiful sankey plot

- Source: R/plot_sankey.R + Source: R/plot_sankey.R
plot_sankey_single.Rd
diff --git a/reference/possible_functions.html b/reference/possible_functions.html index e59d7876..22c84287 100644 --- a/reference/possible_functions.html +++ b/reference/possible_functions.html @@ -38,7 +38,7 @@

Get possible regression models

- Source: R/regression_model.R + Source: R/regression_model.R
possible_functions.Rd
diff --git a/reference/possible_plots.html b/reference/possible_plots.html index 793111da..2d0fd974 100644 --- a/reference/possible_plots.html +++ b/reference/possible_plots.html @@ -38,7 +38,7 @@

Get possible regression models

- Source: R/data_plots.R + Source: R/data_plots.R
possible_plots.Rd
diff --git a/reference/read_input.html b/reference/read_input.html index 73640951..e6c3f1e0 100644 --- a/reference/read_input.html +++ b/reference/read_input.html @@ -38,7 +38,7 @@

Flexible file import based on extension

- Source: R/helpers.R + Source: R/helpers.R
read_input.Rd
diff --git a/reference/redcap_read_shiny_module.html b/reference/redcap_read_shiny_module.html index cfc3e3bc..154f185a 100644 --- a/reference/redcap_read_shiny_module.html +++ b/reference/redcap_read_shiny_module.html @@ -40,7 +40,7 @@ Test app for the redcap_read_shiny_module">

Shiny module to browser and export REDCap data

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
redcap_read_shiny_module.Rd
diff --git a/reference/regression_model.html b/reference/regression_model.html index 79a45b2b..47d5776a 100644 --- a/reference/regression_model.html +++ b/reference/regression_model.html @@ -38,7 +38,7 @@

Create a regression model programatically

- Source: R/regression_model.R + Source: R/regression_model.R
regression_model.Rd
diff --git a/reference/regression_table.html b/reference/regression_table.html index 39b8c95e..53e916f6 100644 --- a/reference/regression_table.html +++ b/reference/regression_table.html @@ -38,7 +38,7 @@

Create table of regression model

- Source: R/regression_table.R + Source: R/regression_table.R
regression_table.Rd
diff --git a/reference/regression_table_create.html b/reference/regression_table_create.html index da4bcd82..140f9dfa 100644 --- a/reference/regression_table_create.html +++ b/reference/regression_table_create.html @@ -38,7 +38,7 @@

Create regression summary table

- Source: R/regression_table.R + Source: R/regression_table.R
regression_table_create.Rd
diff --git a/reference/remove_empty_attr.html b/reference/remove_empty_attr.html index 0e30f83a..23bdee4e 100644 --- a/reference/remove_empty_attr.html +++ b/reference/remove_empty_attr.html @@ -38,7 +38,7 @@

Remove empty/NA attributes

- Source: R/helpers.R + Source: R/helpers.R
remove_empty_attr.Rd
diff --git a/reference/remove_empty_cols.html b/reference/remove_empty_cols.html index 046f1839..29eff831 100644 --- a/reference/remove_empty_cols.html +++ b/reference/remove_empty_cols.html @@ -38,7 +38,7 @@

Removes columns with completenes below cutoff

- Source: R/helpers.R + Source: R/helpers.R
remove_empty_cols.Rd
diff --git a/reference/remove_nested_list.html b/reference/remove_nested_list.html index 89acb88d..f65a8e6a 100644 --- a/reference/remove_nested_list.html +++ b/reference/remove_nested_list.html @@ -38,7 +38,7 @@

Very simple function to remove nested lists, like when uploading .rds

- Source: R/helpers.R + Source: R/helpers.R
remove_nested_list.Rd
diff --git a/reference/repeated_instruments.html b/reference/repeated_instruments.html index 4e6a017b..43610f35 100644 --- a/reference/repeated_instruments.html +++ b/reference/repeated_instruments.html @@ -38,7 +38,7 @@

Get names of repeated instruments

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
repeated_instruments.Rd
diff --git a/reference/restore_labels.html b/reference/restore_labels.html index f26fc0f3..ad0ce4cd 100644 --- a/reference/restore_labels.html +++ b/reference/restore_labels.html @@ -40,7 +40,7 @@ matched by column name; new columns in df_modified are left unchanged.">

Restore column labels using a reference data frame

- Source: R/utils-labels.R + Source: R/utils-labels.R
restore_labels.Rd
diff --git a/reference/selectInputIcon.html b/reference/selectInputIcon.html index 6bb70c7b..a0d3b527 100644 --- a/reference/selectInputIcon.html +++ b/reference/selectInputIcon.html @@ -40,7 +40,7 @@ after, or on both sides of a classic selectInput.">

Create a select input control with icon(s)

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
selectInputIcon.Rd
diff --git a/reference/separate_string.html b/reference/separate_string.html index 37d4e599..57844991 100644 --- a/reference/separate_string.html +++ b/reference/separate_string.html @@ -38,7 +38,7 @@

Separate string wide or long

- Source: R/separate_string.R + Source: R/separate_string.R
separate_string.Rd
diff --git a/reference/set_column_label.html b/reference/set_column_label.html index 8716bb0f..eb0d786a 100644 --- a/reference/set_column_label.html +++ b/reference/set_column_label.html @@ -38,7 +38,7 @@

(Re)label columns in data.frame

- Source: R/helpers.R + Source: R/helpers.R
set_column_label.Rd
diff --git a/reference/show_data.html b/reference/show_data.html index 6014aab3..95609dbb 100644 --- a/reference/show_data.html +++ b/reference/show_data.html @@ -38,7 +38,7 @@

Display a table in a window

- Source: R/datagrid-infos-mod.R + Source: R/datagrid-infos-mod.R
show_data.Rd
diff --git a/reference/simple_snake.html b/reference/simple_snake.html index 4cee8f92..c06ece8a 100644 --- a/reference/simple_snake.html +++ b/reference/simple_snake.html @@ -38,7 +38,7 @@

Simplified version of the snakecase packages to_snake_case

- Source: R/helpers.R + Source: R/helpers.R
simple_snake.Rd
diff --git a/reference/sort_by.html b/reference/sort_by.html index c6f84596..07bfc61c 100644 --- a/reference/sort_by.html +++ b/reference/sort_by.html @@ -38,7 +38,7 @@

Drop-in replacement for the base::sort_by with option to remove NAs

- Source: R/helpers.R + Source: R/helpers.R
sort_by.Rd
diff --git a/reference/specify_qmd_format.html b/reference/specify_qmd_format.html index cf438db4..ec9425a9 100644 --- a/reference/specify_qmd_format.html +++ b/reference/specify_qmd_format.html @@ -38,7 +38,7 @@

Specify format arguments to include in qmd header/frontmatter

- Source: R/report.R + Source: R/report.R
specify_qmd_format.Rd
diff --git a/reference/split-string.html b/reference/split-string.html index 8b08e02d..d9180023 100644 --- a/reference/split-string.html +++ b/reference/split-string.html @@ -38,7 +38,7 @@

String split module based on tidyr::separate_

- Source: R/separate_string.R + Source: R/separate_string.R
split-string.Rd
diff --git a/reference/subset_types.html b/reference/subset_types.html index ee700e62..346a3c9c 100644 --- a/reference/subset_types.html +++ b/reference/subset_types.html @@ -38,7 +38,7 @@

Easily subset by data type function

- Source: R/data_plots.R + Source: R/data_plots.R
subset_types.Rd
diff --git a/reference/supported_functions.html b/reference/supported_functions.html index ca651512..d5574a04 100644 --- a/reference/supported_functions.html +++ b/reference/supported_functions.html @@ -40,7 +40,7 @@ unique for each element on list.'>

Implemented functions

- Source: R/regression_model.R + Source: R/regression_model.R
supported_functions.Rd
diff --git a/reference/supported_plots.html b/reference/supported_plots.html index ae2dbd54..3359f5d9 100644 --- a/reference/supported_plots.html +++ b/reference/supported_plots.html @@ -54,7 +54,7 @@ tertiary.type: Tertiary variable data type (continuous, dichotomous or ordinal)

Implemented functions

- Source: R/data_plots.R + Source: R/data_plots.R
supported_plots.Rd
diff --git a/reference/symmetrical_scale_x_log10.html b/reference/symmetrical_scale_x_log10.html index 3a8695b4..94835e43 100644 --- a/reference/symmetrical_scale_x_log10.html +++ b/reference/symmetrical_scale_x_log10.html @@ -38,7 +38,7 @@

Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots

- Source: R/regression_plot.R + Source: R/regression_plot.R
symmetrical_scale_x_log10.Rd
diff --git a/reference/tbl_merge.html b/reference/tbl_merge.html index 3eefee18..eb0bd75c 100644 --- a/reference/tbl_merge.html +++ b/reference/tbl_merge.html @@ -40,7 +40,7 @@ spanner names.">

A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.

- Source: R/regression_table.R + Source: R/regression_table.R
tbl_merge.Rd
diff --git a/reference/type_icons.html b/reference/type_icons.html index 63a70f8f..c9499fd5 100644 --- a/reference/type_icons.html +++ b/reference/type_icons.html @@ -38,7 +38,7 @@

Get data type icons

- Source: R/data-summary.R + Source: R/data-summary.R
type_icons.Rd
diff --git a/reference/ui_elements.html b/reference/ui_elements.html index 1c9907f8..41c71c22 100644 --- a/reference/ui_elements.html +++ b/reference/ui_elements.html @@ -38,7 +38,7 @@

FreesearchR UI elements list

- Source: R/ui_elements.R + Source: R/ui_elements.R
ui_elements.Rd
diff --git a/reference/unique_names.html b/reference/unique_names.html index d6f02dff..00eeb85e 100644 --- a/reference/unique_names.html +++ b/reference/unique_names.html @@ -42,7 +42,7 @@ If a variable name already exists, a number will be appended.">

Make unique variable names

- Source: R/update-factor-ext.R + Source: R/update-factor-ext.R
unique_names.Rd
diff --git a/reference/unique_short.html b/reference/unique_short.html index 8b83ecf3..d879a8dd 100644 --- a/reference/unique_short.html +++ b/reference/unique_short.html @@ -40,7 +40,7 @@ strings.">

Create unique short names of character vector items based on index

- Source: R/visual_summary.R + Source: R/visual_summary.R
unique_short.Rd
diff --git a/reference/update-factor.html b/reference/update-factor.html index 4836ae7f..07cae017 100644 --- a/reference/update-factor.html +++ b/reference/update-factor.html @@ -38,7 +38,7 @@

Module to Reorder the Levels of a Factor Variable

- Source: R/update-factor-ext.R + Source: R/update-factor-ext.R
update-factor.Rd
diff --git a/reference/update-variables.html b/reference/update-variables.html index 6dd8380f..c83c820b 100644 --- a/reference/update-variables.html +++ b/reference/update-variables.html @@ -38,7 +38,7 @@

Select, rename and convert variables

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
update-variables.Rd
diff --git a/reference/update_variables_datagrid.html b/reference/update_variables_datagrid.html index b61ece5c..dae95400 100644 --- a/reference/update_variables_datagrid.html +++ b/reference/update_variables_datagrid.html @@ -38,7 +38,7 @@

Modified from the datamods pacakge

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
update_variables_datagrid.Rd
diff --git a/reference/validation.html b/reference/validation.html index d405a252..99cdfc77 100644 --- a/reference/validation.html +++ b/reference/validation.html @@ -38,7 +38,7 @@

Validation module

- Source: R/validation.R + Source: R/validation.R
validation.Rd
diff --git a/reference/validation_lib.html b/reference/validation_lib.html index 82ca39c9..a89c808a 100644 --- a/reference/validation_lib.html +++ b/reference/validation_lib.html @@ -38,7 +38,7 @@

Validation library

- Source: R/validation.R + Source: R/validation.R
validation_lib.Rd
diff --git a/reference/vars_filter_validate.html b/reference/vars_filter_validate.html index 7e8b26b0..8f0b9aa7 100644 --- a/reference/vars_filter_validate.html +++ b/reference/vars_filter_validate.html @@ -38,7 +38,7 @@

Variable filter test wrapper

- Source: R/validation.R + Source: R/validation.R
vars_filter_validate.Rd
diff --git a/reference/vectorSelectInput.html b/reference/vectorSelectInput.html index 5e0f3af5..ab3b3718 100644 --- a/reference/vectorSelectInput.html +++ b/reference/vectorSelectInput.html @@ -38,7 +38,7 @@

A selectizeInput customized for named vectors

- Source: R/custom_SelectInput.R + Source: R/custom_SelectInput.R
vectorSelectInput.Rd
diff --git a/reference/vertical_stacked_bars.html b/reference/vertical_stacked_bars.html index 2d001138..2810785d 100644 --- a/reference/vertical_stacked_bars.html +++ b/reference/vertical_stacked_bars.html @@ -38,7 +38,7 @@

Vertical stacked bar plot wrapper

- Source: R/plot_hbar.R + Source: R/plot_hbar.R
vertical_stacked_bars.Rd
diff --git a/reference/visual-summary.html b/reference/visual-summary.html index c9d80b5b..0abacc19 100644 --- a/reference/visual-summary.html +++ b/reference/visual-summary.html @@ -46,7 +46,7 @@ Ggplot2 data summary visualisation based on visdat::vis_dat.">

Data correlations evaluation module

- Source: R/visual_summary.R + Source: R/visual_summary.R
visual-summary.Rd
diff --git a/reference/wide2long.html b/reference/wide2long.html index 7f273578..5dc927f0 100644 --- a/reference/wide2long.html +++ b/reference/wide2long.html @@ -42,7 +42,7 @@ an added "ignore" string pattern or similarly. Example 2.'>

Alternative pivoting method for easily pivoting based on name pattern

- Source: R/wide2long.R + Source: R/wide2long.R
wide2long.Rd
diff --git a/reference/with_labels.html b/reference/with_labels.html index 36f52669..a3635d39 100644 --- a/reference/with_labels.html +++ b/reference/with_labels.html @@ -42,7 +42,7 @@ label automatically.">

Evaluate an expression while preserving column labels

- Source: R/utils-labels.R + Source: R/utils-labels.R
with_labels.Rd
diff --git a/reference/wrap_plot_list.html b/reference/wrap_plot_list.html index bbf3d91d..adc13371 100644 --- a/reference/wrap_plot_list.html +++ b/reference/wrap_plot_list.html @@ -38,7 +38,7 @@

Wrapping

- Source: R/data_plots.R + Source: R/data_plots.R
wrap_plot_list.Rd
diff --git a/reference/write_quarto.html b/reference/write_quarto.html index 36fb8448..6791be00 100644 --- a/reference/write_quarto.html +++ b/reference/write_quarto.html @@ -38,7 +38,7 @@

Wrapper to save data in RDS, load into specified qmd and render

- Source: R/helpers.R + Source: R/helpers.R
write_quarto.Rd
diff --git a/search.json b/search.json index 4c55b4f6..bd1a4d61 100644 --- a/search.json +++ b/search.json @@ -1 +1 @@ -[{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement agdamsbo@clin.au.dk. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU Affero General Public License","title":"GNU Affero General Public License","text":"Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc.  Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU Affero General Public License","text":"GNU Affero General Public License free, copyleft license software kinds works, specifically designed ensure cooperation community case network server software. licenses software practical works designed take away freedom share change works. contrast, General Public Licenses intended guarantee freedom share change versions program–make sure remains free software users. speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. Developers use General Public Licenses protect rights two steps: (1) assert copyright software, (2) offer License gives legal permission copy, distribute /modify software. secondary benefit defending users’ freedom improvements made alternate versions program, receive widespread use, become available developers incorporate. Many developers free software heartened encouraged resulting cooperation. However, case software used network servers, result may fail come . GNU General Public License permits making modified version letting public access server without ever releasing source code public. GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions.","title":"GNU Affero General Public License","text":"“License” refers version 3 GNU Affero General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. Mere interaction user computer network, transfer copy, conveying. interactive user interface displays “Appropriate Legal Notices” extent includes convenient prominently visible feature (1) displays appropriate copyright notice, (2) tells user warranty work (except extent warranties provided), licensees may convey work License, view copy License. interface presents list user commands options, menu, prominent item list meets criterion.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_1-source-code","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"1. Source Code.","title":"GNU Affero General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. However, include work’s System Libraries, general-purpose tools generally available free programs used unmodified performing activities part work. example, Corresponding Source includes interface definition files associated source files work, source code shared libraries dynamically linked subprograms work specifically designed require, intimate data communication control flow subprograms parts work. Corresponding Source need include anything users can regenerate automatically parts Corresponding Source. Corresponding Source work source code form work.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_2-basic-permissions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"2. Basic Permissions.","title":"GNU Affero General Public License","text":"rights granted License granted term copyright Program, irrevocable provided stated conditions met. License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law.","title":"GNU Affero General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies.","title":"GNU Affero General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. Conveying Modified Source Versions.","title":"GNU Affero General Public License","text":"may convey work based Program, modifications produce Program, form source code terms section 4, provided also meet conditions: work must carry prominent notices stating modified , giving relevant date. work must carry prominent notices stating released License conditions added section 7. requirement modifies requirement section 4 “keep intact notices”. must license entire work, whole, License anyone comes possession copy. License therefore apply, along applicable section 7 additional terms, whole work, parts, regardless packaged. License gives permission license work way, invalidate permission separately received . work interactive user interfaces, must display Appropriate Legal Notices; however, Program interactive interfaces display Appropriate Legal Notices, work need make . compilation covered work separate independent works, nature extensions covered work, combined form larger program, volume storage distribution medium, called “aggregate” compilation resulting copyright used limit access legal rights compilation’s users beyond individual works permit. Inclusion covered work aggregate cause License apply parts aggregate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_6-conveying-non-source-forms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"6. Conveying Non-Source Forms.","title":"GNU Affero General Public License","text":"may convey covered work object code form terms sections 4 5, provided also convey machine-readable Corresponding Source terms License, one ways: Convey object code , embodied , physical product (including physical distribution medium), accompanied Corresponding Source fixed durable physical medium customarily used software interchange. Convey object code , embodied , physical product (including physical distribution medium), accompanied written offer, valid least three years valid long offer spare parts customer support product model, give anyone possesses object code either (1) copy Corresponding Source software product covered License, durable physical medium customarily used software interchange, price reasonable cost physically performing conveying source, (2) access copy Corresponding Source network server charge. Convey individual copies object code copy written offer provide Corresponding Source. alternative allowed occasionally noncommercially, received object code offer, accord subsection 6b. Convey object code offering access designated place (gratis charge), offer equivalent access Corresponding Source way place charge. need require recipients copy Corresponding Source along object code. place copy object code network server, Corresponding Source may different server (operated third party) supports equivalent copying facilities, provided maintain clear directions next object code saying find Corresponding Source. Regardless server hosts Corresponding Source, remain obligated ensure available long needed satisfy requirements. Convey object code using peer--peer transmission, provided inform peers object code Corresponding Source work offered general public charge subsection 6d. separable portion object code, whose source code excluded Corresponding Source System Library, need included conveying object code work. “User Product” either (1) “consumer product”, means tangible personal property normally used personal, family, household purposes, (2) anything designed sold incorporation dwelling. determining whether product consumer product, doubtful cases shall resolved favor coverage. particular product received particular user, “normally used” refers typical common use class product, regardless status particular user way particular user actually uses, expects expected use, product. product consumer product regardless whether product substantial commercial, industrial non-consumer uses, unless uses represent significant mode use product. “Installation Information” User Product means methods, procedures, authorization keys, information required install execute modified versions covered work User Product modified version Corresponding Source. information must suffice ensure continued functioning modified object code case prevented interfered solely modification made. convey object code work section , , specifically use , User Product, conveying occurs part transaction right possession use User Product transferred recipient perpetuity fixed term (regardless transaction characterized), Corresponding Source conveyed section must accompanied Installation Information. requirement apply neither third party retains ability install modified object code User Product (example, work installed ROM). requirement provide Installation Information include requirement continue provide support service, warranty, updates work modified installed recipient, User Product modified installed. Access network may denied modification materially adversely affects operation network violates rules protocols communication across network. Corresponding Source conveyed, Installation Information provided, accord section must format publicly documented (implementation available public source code form), must require special password key unpacking, reading copying.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_7-additional-terms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"7. Additional Terms.","title":"GNU Affero General Public License","text":"“Additional permissions” terms supplement terms License making exceptions one conditions. Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. Notwithstanding provision License, material add covered work, may (authorized copyright holders material) supplement terms License terms: Disclaiming warranty limiting liability differently terms sections 15 16 License; Requiring preservation specified reasonable legal notices author attributions material Appropriate Legal Notices displayed works containing ; Prohibiting misrepresentation origin material, requiring modified versions material marked reasonable ways different original version; Limiting use publicity purposes names licensors authors material; Declining grant rights trademark law use trade names, trademarks, service marks; Requiring indemnification licensors authors material anyone conveys material (modified versions ) contractual assumptions liability recipient, liability contractual assumptions directly impose licensors authors. non-permissive additional terms considered “restrictions” within meaning section 10. Program received , part , contains notice stating governed License along term restriction, may remove term. license document contains restriction permits relicensing conveying License, may add covered work material governed terms license document, provided restriction survive relicensing conveying. add terms covered work accord section, must place, relevant source files, statement additional terms apply files, notice indicating find applicable terms. Additional terms, permissive non-permissive, may stated form separately written license, stated exceptions; requirements apply either way.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_8-termination","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"8. Termination.","title":"GNU Affero General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. Termination rights section terminate licenses parties received copies rights License. rights terminated permanently reinstated, qualify receive new licenses material section 10.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_9-acceptance-not-required-for-having-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"9. Acceptance Not Required for Having Copies.","title":"GNU Affero General Public License","text":"required accept License order receive run copy Program. Ancillary propagation covered work occurring solely consequence using peer--peer transmission receive copy likewise require acceptance. However, nothing License grants permission propagate modify covered work. actions infringe copyright accept License. Therefore, modifying propagating covered work, indicate acceptance License .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_10-automatic-licensing-of-downstream-recipients","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"10. Automatic Licensing of Downstream Recipients.","title":"GNU Affero General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. Patents.","title":"GNU Affero General Public License","text":"“contributor” copyright holder authorizes use License Program work Program based. work thus licensed called contributor’s “contributor version”. contributor’s “essential patent claims” patent claims owned controlled contributor, whether already acquired hereafter acquired, infringed manner, permitted License, making, using, selling contributor version, include claims infringed consequence modification contributor version. purposes definition, “control” includes right grant patent sublicenses manner consistent requirements License. contributor grants non-exclusive, worldwide, royalty-free patent license contributor’s essential patent claims, make, use, sell, offer sale, import otherwise run, modify propagate contents contributor version. following three paragraphs, “patent license” express agreement commitment, however denominated, enforce patent (express permission practice patent covenant sue patent infringement). “grant” patent license party means make agreement commitment enforce patent party. convey covered work, knowingly relying patent license, Corresponding Source work available anyone copy, free charge terms License, publicly available network server readily accessible means, must either (1) cause Corresponding Source available, (2) arrange deprive benefit patent license particular work, (3) arrange, manner consistent requirements License, extend patent license downstream recipients. “Knowingly relying” means actual knowledge , patent license, conveying covered work country, recipient’s use covered work country, infringe one identifiable patents country reason believe valid. , pursuant connection single transaction arrangement, convey, propagate procuring conveyance , covered work, grant patent license parties receiving covered work authorizing use, propagate, modify convey specific copy covered work, patent license grant automatically extended recipients covered work works based . patent license “discriminatory” include within scope coverage, prohibits exercise , conditioned non-exercise one rights specifically granted License. may convey covered work party arrangement third party business distributing software, make payment third party based extent activity conveying work, third party grants, parties receive covered work , discriminatory patent license () connection copies covered work conveyed (copies made copies), (b) primarily connection specific products compilations contain covered work, unless entered arrangement, patent license granted, prior 28 March 2007. Nothing License shall construed excluding limiting implied license defenses infringement may otherwise available applicable patent law.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_12-no-surrender-of-others-freedom","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"12. No Surrender of Others’ Freedom.","title":"GNU Affero General Public License","text":"conditions imposed (whether court order, agreement otherwise) contradict conditions License, excuse conditions License. convey covered work satisfy simultaneously obligations License pertinent obligations, consequence may convey . example, agree terms obligate collect royalty conveying convey Program, way satisfy terms License refrain entirely conveying Program.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_13-remote-network-interaction-use-with-the-gnu-general-public-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"13. Remote Network Interaction; Use with the GNU General Public License.","title":"GNU Affero General Public License","text":"Notwithstanding provision License, modify Program, modified version must prominently offer users interacting remotely computer network (version supports interaction) opportunity receive Corresponding Source version providing access Corresponding Source network server charge, standard customary means facilitating copying software. Corresponding Source shall include Corresponding Source work covered version 3 GNU General Public License incorporated pursuant following paragraph. Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU General Public License single combined work, convey resulting work. terms License continue apply part covered work, work combined remain governed version 3 GNU General Public License.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License.","title":"GNU Affero General Public License","text":"Free Software Foundation may publish revised /new versions GNU Affero General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":" Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see ."},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set also available, collection questions answers project use FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"how-do-i-merge-multiple-datasets","dir":"","previous_headings":"","what":"How do I merge multiple datasets?","title":"Questions and answers","text":"can merge multiple sheets ods xls(x) files import common key variable present selected sheets. Multiple file upload/merge currently supported.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, however, version 25.4.2, FreesearchR app considered functional can used data evaluation analyses. (actual list quite long growing) planned new features improvements:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"implementation-in-real-world-clinical-studies-and-projects","dir":"","previous_headings":"","what":"Implementation in real world clinical studies and projects","title":"Project roadmap","text":"really main goal whole project.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"new-features","dir":"","previous_headings":"","what":"New features:","title":"Project roadmap","text":"Merge data multiple sources (can merge sheets workbook (xls ods), allow merging several files /REDcap data) Additional plot types (bar plots, others…) Missingness analysis panel","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"expanded-options-for-regression-models","dir":"","previous_headings":"","what":"Expanded options for regression models:","title":"Project roadmap","text":"Expansion regression analysis functionality put hold now focus basic use-cases): study designs Cross-sectional data analyses Longitudinal data analyses Survival analysis regression models Stratified analyses Mixed models repeated measures Cox regression analyses Data handling Transforming data (transpose pivoting)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"improved-documentation","dir":"","previous_headings":"","what":"Improved documentation:","title":"Project roadmap","text":"Video walk-central functions","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"platform-info","dir":"Articles","previous_headings":"","what":"Platform info","title":"Session info","text":"","code":"FreesearchR:::session_data$platform |> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"libraries","dir":"Articles","previous_headings":"","what":"Libraries","title":"Session info","text":"","code":"FreesearchR:::session_data$libs|> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Jutta Mari Adelin Jørgensen. Contributor. Anne Brink Behrndtz. Contributor.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2026). FreesearchR: Easy data analysis clinicians. R package version 26.3.3, https://github.com/agdamsbo/FreesearchR.","code":"@Manual{, title = {FreesearchR: Easy data analysis for clinicians}, author = {Andreas Gammelgaard Damsbo}, year = {2026}, note = {R package version 26.3.3}, url = {https://github.com/agdamsbo/FreesearchR}, }"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"freesearchr-","dir":"","previous_headings":"","what":"Easy data analysis for clinicians","title":"Easy data analysis for clinicians","text":"FreesearchR simple, clinical health data exploration analysis tool democratise clinical research assisting researcher easily evaluate analyse data export publication ready results. FreesearchR free open-source, accessible web browser link. app can also run locally, please see . feedback welcome can shared GitHub issue. suggestions collaboration much welcomed. Please reach !","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"motivation","dir":"","previous_headings":"","what":"Motivation","title":"Easy data analysis for clinicians","text":"app following simple goals: help health clinician getting overview data quality improvement projects clinical research help learners get good start analysing data coding R ease quick data overview basic visualisations clinical researcher ’s polished restructured version README section clarity, conciseness, user-friendliness:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-locally-on-your-own-machine","dir":"","previous_headings":"","what":"Run Locally on Your Own Machine","title":"Easy data analysis for clinicians","text":"FreesearchR app can run locally machine, ensuring data transmitted externally. available options setup configuration.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"configuration--data-loading","dir":"","previous_headings":"Run Locally on Your Own Machine","what":"Configuration & Data Loading","title":"Easy data analysis for clinicians","text":"app can configured either passing named list run_app() setting environment variables Docker Compose file. following variables control data access display behavior. values provided, app use defaults listed . Configuration Variables","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-from-r-or-rstudio","dir":"","previous_headings":"Run Locally on Your Own Machine","what":"Run from R (or RStudio)","title":"Easy data analysis for clinicians","text":"’re working data R, FreesearchR quick easy tool exploratory analysis. Requirement: Ensure R installed, optionally editor like RStudio. Open R console run following code install FreesearchR package launch app: variables specified can also passed app launch R.","code":"if (!require(\"devtools\")) install.packages(\"devtools\") devtools::install_github(\"agdamsbo/FreesearchR\") library(FreesearchR) # Load sample data (e.g., mtcars) to make it available in the app data(mtcars) launch_FreesearchR(INCLUDE_GLOBALENV=TRUE)"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"running-with-docker-compose","dir":"","previous_headings":"Run Locally on Your Own Machine","what":"Running with Docker Compose","title":"Easy data analysis for clinicians","text":"advanced users, can deploy FreesearchR using Docker. data folder can mounted /app/data automatically load supported file types (.csv, .tsv, .txt, .xls, .xlsx, .ods, .dta, .rds) startup. mount local data folder, add volumes entry docker-compose.yml file: :ro flag mounts folder read-, preventing app modifying original data files. volume mounted, app start without preloaded datasets.","code":"services: shiny: image: ghcr.io/agdamsbo/freesearchr:latest volumes: - ./data:/app/data:ro environment: - INCLUDE_GLOBALENV=FALSE - DATA_LIMIT_DEFAULT=10000 - DATA_LIMIT_UPPER=100000 - DATA_LIMIT_LOWER=1 ports: - '3838:3838' restart: on-failure"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Easy data analysis for clinicians","text":"Please note FreesearchR project published Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"translators","dir":"","previous_headings":"","what":"Translators","title":"Easy data analysis for clinicians","text":"Thank much translators helped translate validate translation drafts.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"acknowledgements","dir":"","previous_headings":"","what":"Acknowledgements","title":"Easy data analysis for clinicians","text":"Like project, project never possible without great work others. sources packages used: FreesearchR app built Shiny based R. gtsummary: superb flexible way create publication-ready analytical summary tables. dreamRs: maintainers broad selection great extensions tools Shiny. easystats: performance::check_model() function central sparking idea create data analysis tool. IDEAfilter: visually appealing data filter function based {shinyDataFilter}. project written human AI-based tools. online FreesearchR app contains tracking script, transmitting minimal data usage. uploaded data transmitted anywhere. look tracking data . tracking data sent running app locally (see ).","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":null,"dir":"Reference","previous_headings":"","what":"Use the FreesearchR colors — FreesearchR_palette","title":"Use the FreesearchR colors — FreesearchR_palette","text":"Use FreesearchR colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Use the FreesearchR colors — FreesearchR_palette","text":"n number colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Use the FreesearchR colors — FreesearchR_palette","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n=7) #> [1] \"#1E4A8F\" \"#FF6F61\" \"#00C896\" \"#FFB100\" \"#CC2E25\" \"#8A4FFF\" \"#11A0EC\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":null,"dir":"Reference","previous_headings":"","what":"Custom theme based on unity — FreesearchR_theme","title":"Custom theme based on unity — FreesearchR_theme","text":"Custom theme based unity","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Custom theme based on unity — FreesearchR_theme","text":"","code":"FreesearchR_theme( ..., version = 5, primary = FreesearchR_colors(\"primary\"), secondary = FreesearchR_colors(\"secondary\"), bootswatch = \"united\", base_font = bslib::font_google(\"Montserrat\"), heading_font = bslib::font_google(\"Public Sans\", wght = \"700\"), code_font = bslib::font_google(\"Open Sans\"), success = FreesearchR_colors(\"success\"), info = FreesearchR_colors(\"info\"), warning = FreesearchR_colors(\"warning\"), danger = FreesearchR_colors(\"danger\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Custom theme based on unity — FreesearchR_theme","text":"... everything passed bslib::bs_theme()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Custom theme based on unity — FreesearchR_theme","text":"theme list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Custom theme based on unity — FreesearchR_theme","text":"","code":"if (interactive()) { bs_theme_preview(FreesearchR_theme) }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\", fun = class_icons)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |> overview_vars() |> toastui::datagrid() |> add_class_icon() {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[6,6,4,6,8,6,8,4,4,6,6,8,8,8,8,8,8,4,4,4,4,8,8,8,8,4,4,4,8,6,8,4],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[0,0,1,1,0,1,0,1,1,1,1,0,0,0,0,0,0,1,1,1,1,0,0,0,0,1,0,1,0,0,0,1],[1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,1,1,1,1,1,1,1],[4,4,4,3,3,3,3,4,4,4,4,3,3,3,3,3,3,4,4,4,3,3,3,3,3,4,5,5,5,5,5,4],[4,4,1,1,2,1,4,2,2,4,4,3,3,3,4,4,4,1,2,1,1,2,2,4,2,1,2,2,4,6,8,2]]],\"colnames\":[\"icon\",\"class\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"icon\",\"name\":\"icon\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.format\",\"options\":{\"formatted\":[\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\"]}},\"width\":60},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}}],\"bodyHeight\":\"fitToParent\",\"draggable\":false,\"usageStatistics\":false,\"contextMenu\":null,\"rowHeight\":\"auto\"},\"theme\":\"clean\",\"themeOptions\":{\"cell\":{\"normal\":{\"showHorizontalBorder\":true}}},\"language\":\"en\",\"languageOptions\":[],\"filters\":false,\"rowAttributes\":[],\"validationInput\":false,\"dataAsInput\":false,\"dragInput\":false},\"evals\":[\"options.columns.1.renderer.type\"],\"jsHooks\":[]}"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":null,"dir":"Reference","previous_headings":"","what":"Add sparkline to datagrid — add_sparkline","title":"Add sparkline to datagrid — add_sparkline","text":"Add sparkline datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"add_sparkline( grid, column = \"vals\", color.main = \"#2a8484\", color.sec = \"#84EF84\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add sparkline to datagrid — add_sparkline","text":"grid grid column clumn transform","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add sparkline to datagrid — add_sparkline","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"grid <- mtcars |> default_parsing() |> overview_vars() |> toastui::datagrid() |> add_sparkline() grid {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"factor\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"logical\",\"logical\",\"factor\",\"factor\"],[\"numeric\",\"factor\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"logical\",\"logical\",\"factor\",\"factor\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[\"6\",\"6\",\"4\",\"6\",\"8\",\"6\",\"8\",\"4\",\"4\",\"6\",\"6\",\"8\",\"8\",\"8\",\"8\",\"8\",\"8\",\"4\",\"4\",\"4\",\"4\",\"8\",\"8\",\"8\",\"8\",\"4\",\"4\",\"4\",\"8\",\"6\",\"8\",\"4\"],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[false,false,true,true,false,true,false,true,true,true,true,false,false,false,false,false,false,true,true,true,true,false,false,false,false,true,false,true,false,false,false,true],[true,true,true,false,false,false,false,false,false,false,false,false,false,false,false,false,false,true,true,true,false,false,false,false,false,true,true,true,true,true,true,true],[\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"3\",\"4\",\"5\",\"5\",\"5\",\"5\",\"5\",\"4\"],[\"4\",\"4\",\"1\",\"1\",\"2\",\"1\",\"4\",\"2\",\"2\",\"4\",\"4\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"1\",\"2\",\"1\",\"1\",\"2\",\"2\",\"4\",\"2\",\"1\",\"2\",\"2\",\"4\",\"6\",\"8\",\"2\"]]],\"colnames\":[\"icon\",\"class\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"icon\",\"name\":\"icon\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.htmlwidgets\",\"options\":{\"rendered\":[\"
<\\/div>\\n