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reference/create_baseline.md

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+# Create a baseline table
+
+Create a baseline table
+
+## Usage
+
+``` r
+create_baseline(
+  data,
+  ...,
+  by.var,
+  add.p = FALSE,
+  add.overall = FALSE,
+  theme = c("jama", "lancet", "nejm", "qjecon"),
+  detail_level = c("minimal", "extended")
+)
+```
+
+## Arguments
+
+- data:
+
+  data
+
+- ...:
+
+  passed as fun.arg to baseline_table()
+
+- by.var:
+
+  specify stratification variable
+
+- add.p:
+
+  add comparison/p-value
+
+- add.overall:
+
+  add overall column
+
+- theme:
+
+  set table theme
+
+- detail_level:
+
+  specify detail level. Either "minimal" or "extended".
+
+## Value
+
+gtsummary table list object
+
+## Examples
+
+``` r
+mtcars |> create_baseline(by.var = "gear", add.p = "yes" == "yes")
+
+
+  
+
+Characteristic
+```
+
+**3**  
+N = 15
+
+**4**  
+N = 12
+
+**5**  
+N = 5
+
+**p-value**¹
+
+mpg, Median (IQR)
+
+15.5 (14.3 – 18.7)
+
+22.8 (21.0 – 28.9)
+
+19.7 (15.8 – 26.0)
+
+\<0.001
+
+cyl, n (%)
+
+  
+
+  
+
+  
+
+\<0.001
+
+    4
+
+1 (6.7)
+
+8 (67)
+
+2 (40)
+
+  
+
+    6
+
+2 (13)
+
+4 (33)
+
+1 (20)
+
+  
+
+    8
+
+12 (80)
+
+0 (0)
+
+2 (40)
+
+  
+
+disp, Median (IQR)
+
+318 (276 – 400)
+
+131 (79 – 160)
+
+145 (120 – 301)
+
+\<0.001
+
+hp, Median (IQR)
+
+180 (150 – 215)
+
+94 (66 – 110)
+
+175 (113 – 264)
+
+\<0.001
+
+drat, Median (IQR)
+
+3.08 (3.00 – 3.21)
+
+3.92 (3.90 – 4.10)
+
+3.77 (3.62 – 4.22)
+
+\<0.001
+
+wt, Median (IQR)
+
+3.73 (3.44 – 4.07)
+
+2.70 (2.07 – 3.17)
+
+2.77 (2.14 – 3.17)
+
+\<0.001
+
+qsec, Median (IQR)
+
+17.42 (17.02 – 18.00)
+
+18.76 (18.41 – 19.69)
+
+15.50 (14.60 – 16.70)
+
+0.002
+
+vs, n (%)
+
+3 (20)
+
+10 (83)
+
+1 (20)
+
+0.001
+
+am, n (%)
+
+0 (0)
+
+8 (67)
+
+5 (100)
+
+\<0.001
+
+carb, n (%)
+
+  
+
+  
+
+  
+
+0.24
+
+    1
+
+3 (20)
+
+4 (33)
+
+0 (0)
+
+  
+
+    2
+
+4 (27)
+
+4 (33)
+
+2 (40)
+
+  
+
+    3
+
+3 (20)
+
+0 (0)
+
+0 (0)
+
+  
+
+    4
+
+5 (33)
+
+4 (33)
+
+1 (20)
+
+  
+
+    6
+
+0 (0)
+
+0 (0)
+
+1 (20)
+
+  
+
+    8
+
+0 (0)
+
+0 (0)
+
+1 (20)
+
+  
+
+¹ Kruskal-Wallis rank sum test; Fisher’s exact test
+
+mtcars \|\> create_baseline(by.var = "gear", detail_level = "extended")
+
+[TABLE]
+
+mtcars \|\> create_baseline(by.var = "gear", detail_level =
+"extended",type =
+[list](https://rdrr.io/r/base/list.html)(gtsummary::[all_dichotomous](https://www.danieldsjoberg.com/gtsummary/reference/select_helpers.html)()
+~ "categorical"),theme="nejm")
+
+[TABLE]
+
+create_baseline([default_parsing](https://agdamsbo.github.io/FreesearchR/reference/default_parsing.md)(mtcars),
+by.var = "am", add.p = FALSE, add.overall = FALSE, theme = "lancet")
+
+[TABLE]