mirror of
https://github.com/agdamsbo/FreesearchR.git
synced 2026-06-19 04:27:30 +02:00
Deploying to gh-pages from @ agdamsbo/FreesearchR@54dd332cd8 🚀
This commit is contained in:
agdamsbo
parent
4cf4bd0499
commit
6d545337de
328 changed files with 12930 additions and 1662 deletions
300
news/index.md
Normal file
300
news/index.md
Normal file
|
|
@ -0,0 +1,300 @@
|
|||
# Changelog
|
||||
|
||||
## FreesearchR 25.11.2
|
||||
|
||||
*NEW* Vignettes were moved to the [FreesearchR project knowledge
|
||||
base](https://freesearchr.github.io/FreesearchR-knowledge/). This was
|
||||
mainly to ease rendering and allow quick and easy updates as well as
|
||||
future translations.
|
||||
|
||||
## FreesearchR 25.11.1
|
||||
|
||||
*NEW* Added option to select extensive baseline table selecting between
|
||||
“Minimal” (current) or “Extensive” which adds mean/sd and min/max as
|
||||
well as plots all levels also for dichotomous variables.
|
||||
|
||||
## FreesearchR 25.10.5
|
||||
|
||||
*NEW* New character/text split function available. A selection of
|
||||
delimiters are recognised and selectable. Function only available if
|
||||
splittable variables are present.
|
||||
|
||||
*NEW* Distribution plotting for factors have been much improved
|
||||
including two new bar plot styles and removing options better suited for
|
||||
continuous data.
|
||||
|
||||
These were the last major functions to be implemented after workshops at
|
||||
Jitimai in Zanzibar City, Zanzibar during October 2025.
|
||||
|
||||
## FreesearchR 25.10.4
|
||||
|
||||
*NEW* Two new options to create new simplified factors from factors. The
|
||||
“top” option will keep only the top N levels, while the “bottom” option
|
||||
will combine all levels occurring below set percentage.
|
||||
|
||||
*NEW* The “New factor” function received some updates to include
|
||||
detailed information on the methods for creating new factors.
|
||||
|
||||
*LANGUAGE* Updated Swahili strings. All Danish strings are translated.
|
||||
New languages are on track.
|
||||
|
||||
## FreesearchR 25.10.3
|
||||
|
||||
*NEW* Improvements to translations with more strings having been
|
||||
translated. Nearing completion of marking strings for translation, which
|
||||
means (almost) the complete interface is now translatable.
|
||||
|
||||
## FreesearchR 25.10.2
|
||||
|
||||
*NEW* Improvements to translations with more strings having been
|
||||
translated.
|
||||
|
||||
*NEW* More detailed label for the stacked horizontal bar plot.
|
||||
|
||||
*NEW* Better .rds import that will import the first element as
|
||||
data.frame if a list-type element is supplied.
|
||||
|
||||
*NEW* A limit to the imported dataset size was added to ensure
|
||||
performance on hosted version. The data is limited to 100.000 cells by
|
||||
dropping rows to fit. The vast majority of users will never experience
|
||||
this capping, but adds a layer of security and stability to the hosting
|
||||
framework.
|
||||
|
||||
## FreesearchR 25.10.1
|
||||
|
||||
*NEW* Improvements to translations with more strings having been
|
||||
translated.
|
||||
|
||||
*NEW* Sample data has been filtered to only include a few select
|
||||
packages (NHANES and stRoke).
|
||||
|
||||
*NEW* Missings evaluations slightly tweaked to include bold significant
|
||||
p-values for easier overview.
|
||||
|
||||
## FreesearchR 25.9.2
|
||||
|
||||
*NEW* Improvements to translations with more strings having been
|
||||
translated.
|
||||
|
||||
The Euler visualisation option has been limited to only plot dichotomous
|
||||
variables. This is also what makes the most sense.
|
||||
|
||||
## FreesearchR 25.9.1
|
||||
|
||||
*NEW* Language has been revised to make the app more accessible and
|
||||
easier to understand.
|
||||
|
||||
*NEW* Foundations for introducing an internationalised UI has been
|
||||
introduced. Initial and very rudimentary translation for Danish and
|
||||
Swahili is included. Other languages can be added as well.
|
||||
|
||||
*NEW* Alerts as to guide on select important steps and aspects are
|
||||
introduced. This is expected to expand.
|
||||
|
||||
## FreesearchR 25.8.2
|
||||
|
||||
- *NEW* Including the
|
||||
[NHANES](https://cran.r-project.org/web/packages/NHANES/refman/NHANES.html#NHANES)
|
||||
dataset for experimentation.
|
||||
|
||||
- *BUG* Improved JS to correctly handle menu drop downs on mobile
|
||||
devices
|
||||
|
||||
- *DOCS* Updated “Prepare \> Overview” to “Prepare \> Overview and
|
||||
filter” to better reflect options.
|
||||
|
||||
## FreesearchR 25.8.1
|
||||
|
||||
- *NEW* improved the use of
|
||||
[`wrap_plot_list()`](https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.md)
|
||||
to pass on additional arguments to
|
||||
[`patchwork::wrap_plots()`](https://patchwork.data-imaginist.com/reference/wrap_plots.html)
|
||||
and allowed to specify axes to align in
|
||||
[`align_axes()`](https://agdamsbo.github.io/FreesearchR/reference/align_axes.md).
|
||||
- *FIX* fixed axis text printed in Euler diagrams
|
||||
|
||||
## FreesearchR 25.7.2
|
||||
|
||||
- *FIX* refining hiding drop downs. All JavaScript is now in separate
|
||||
file. Coded with GAI help from claude.ai.
|
||||
|
||||
- *FIX* refined iconography and navigation
|
||||
|
||||
- *FIX* updated intro and docs.
|
||||
|
||||
## FreesearchR 25.7.1
|
||||
|
||||
- *NEW* UI overhaul and navigation update. The interface is simplified
|
||||
to clearly show the relationship between panels and sub-items by
|
||||
abandoning multiple levels on panel to instead show a drop-down menu.
|
||||
This also results in simplified sidebar menus with room to add more
|
||||
controls in the future.
|
||||
|
||||
## FreesearchR 25.6.4
|
||||
|
||||
The app is now also published as a docker container. See the README for
|
||||
instructions. It is mainly to use for hosting the app. Work is ongoing
|
||||
to publish a true standalone app, preferably for both Windows and MacOS.
|
||||
|
||||
- *FIX* improved plot labels.
|
||||
|
||||
## FreesearchR 25.6.3
|
||||
|
||||
- *NEW* Introducing more options to evaluate missing observations.
|
||||
Inspired by the \[visdat()\] function from the {visdat} package, a
|
||||
specialised function has been introduced to easily visualise data
|
||||
classes and missing observations in the data set. This highly
|
||||
increases the options to visually get an overview of the data and to
|
||||
assess the pattern of missing data. Also under Evaluate, a comparison
|
||||
module has been introduced to compare the distribution of observations
|
||||
across variables depending on the missing vs non-missing in a
|
||||
specified variable.
|
||||
|
||||
- *FIX* The REDCap import module has been updated visually and the PAI
|
||||
token is now hidden as a password. This module should still only be
|
||||
used when running locally if you are accessing sensitive data.
|
||||
|
||||
- minor rewordings and updated UI.
|
||||
|
||||
## FreesearchR 25.6.2
|
||||
|
||||
- *FIX* Added warning about only using REDCap with sensitive data
|
||||
running locally. THis applies to all data actually. Considering taking
|
||||
REDCap out in hosted version. Standalone app is in the works.
|
||||
|
||||
- *FIX* Reworded the completeness filter to be on missingness, as this
|
||||
is a more commonly used concept.
|
||||
|
||||
- *FIX* Improved layout around data filters to improve usage.
|
||||
|
||||
- *FIX* Regression table in report respects inclusion of p-values or
|
||||
not.
|
||||
|
||||
## FreesearchR 25.6.1
|
||||
|
||||
- *FIX* big not allowing to browse data
|
||||
|
||||
- *FIX* caught the last bugs when initiating the creation of new
|
||||
variables
|
||||
|
||||
## FreesearchR 25.5.6
|
||||
|
||||
- *FIX* note on max file size of 5 mb
|
||||
|
||||
- *FIX* added a banner to the dev version on shinyapps.io
|
||||
|
||||
- *FIX* updated intro text
|
||||
|
||||
## FreesearchR 25.5.5
|
||||
|
||||
- *FIX* several minor bugs and polish
|
||||
|
||||
- *FIX* include/exclude p-values in regression table.
|
||||
|
||||
## FreesearchR 25.5.4
|
||||
|
||||
- *FIX* correctly omit NAs in
|
||||
[`data_type()`](https://agdamsbo.github.io/FreesearchR/reference/data_type.md)
|
||||
call
|
||||
|
||||
- *FIX* omit NAs when plotting Euler diagrams.
|
||||
|
||||
- *FIX* print correct labels in horizontal stacked bars.
|
||||
|
||||
- *FIX* initial app load should feel faster.
|
||||
|
||||
## FreesearchR 25.5.3
|
||||
|
||||
- *FIX* a little polish on the data import
|
||||
|
||||
- *FIX* polished REDCap import and new code to reference the
|
||||
[`REDCapCAST::easy_redcap()`](https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html)
|
||||
function.
|
||||
|
||||
- *FIX* updated documentation to reflect new private hosting on a
|
||||
Hetzner server in Germany.
|
||||
|
||||
## FreesearchR 25.5.2
|
||||
|
||||
- *FIX*: correct export of plots. The solution in the last version broke
|
||||
more than it solved.
|
||||
|
||||
- *NEW*: added simple loading animation.
|
||||
|
||||
A privately hosted version is now live on app.freesearchr.org. For now,
|
||||
it is hosted on Hetzner with Yunohost.
|
||||
|
||||
## FreesearchR 25.5.1
|
||||
|
||||
- *FIX*: correct export of single variable plot.
|
||||
|
||||
- *NEW*: Include app version in report for reference.
|
||||
|
||||
- *NEW*: Show progress on connecting to a REDCap database.
|
||||
|
||||
- *FIX*: Data import code export.
|
||||
|
||||
## FreesearchR 25.4.5
|
||||
|
||||
- *BUG*: Regression results and code not returned correctly
|
||||
|
||||
- *IMPROVED*: analyses results are reset on data change
|
||||
|
||||
- *NEW*: app usage tracking only in hosted app. README updated to
|
||||
reflect.
|
||||
|
||||
## FreesearchR 25.4.4
|
||||
|
||||
Minor updates in docs and easier citation.
|
||||
|
||||
## FreesearchR 25.4.3
|
||||
|
||||
- *NEW*: Added a variables type filter to easily exclude unwanted types.
|
||||
This also includes having data type rather than data class in the
|
||||
summary table. Will evaluate. Types are a simpler, more practical
|
||||
version of the *R* data class to easy interpretation.
|
||||
|
||||
- *NEW*: A logo is here! It should emphasize the underlying reliance on
|
||||
*R* while also inspire to explore.
|
||||
|
||||
- *IMPROVED*: docs are updated and much more comprehensive. They will be
|
||||
continuously updated.
|
||||
|
||||
Polishing and moved hosted app to new address to fully reflect name
|
||||
change: <https://agdamsbo.shinyapps.io/FreesearchR/>
|
||||
|
||||
## FreesearchR 25.4.2
|
||||
|
||||
Polished and simplified data import module including a much improved
|
||||
REDCap import module.
|
||||
|
||||
- *CHANGE*
|
||||
[`default_parsing()`](https://agdamsbo.github.io/FreesearchR/reference/default_parsing.md)
|
||||
now ensure unique variable names.
|
||||
|
||||
- *NEW* Working code output for all major modules including import,
|
||||
modifications, filter, evaluation, plotting and regression. And it is
|
||||
nicely formatted!
|
||||
|
||||
- *NEW* The basics of a “Getting started”-vignette is done, and can be
|
||||
expanded on later.
|
||||
|
||||
## FreesearchR 25.4.1
|
||||
|
||||
Focus is on polish and improved ui/ux.
|
||||
|
||||
Updating project name to FreesearchR, with renamed repository. Graphics
|
||||
are coming. This may introduce some breaking chances for others calling
|
||||
or installing the package. No additional future changes are planned. A
|
||||
complete transition is planned before attending and presenting a poster
|
||||
at the European Stroke Organisation Conference 2025 in May.
|
||||
|
||||
Testing file upload conducted and improved.
|
||||
|
||||
Working on improving code export. This is very difficult to get perfect.
|
||||
Initial focus is on extracting enough to be able to learn from it.
|
||||
|
||||
Regression calculations, plots, and checks have been improved and moved
|
||||
to standalone module.
|
||||
|
||||
Data overview/modifications has been simplified slightly.
|
||||
Loading…
Add table
Add a link
Reference in a new issue