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agdamsbo 2026-03-23 13:50:03 +00:00
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<p>The <a href="https://app.freesearchr.org" class="external-link"><strong><em>FreesearchR</em></strong></a> is a simple, clinical health data exploration and analysis tool to democratise clinical research by assisting any researcher to easily evaluate and analyse data and export publication ready results.</p>
<p><a href="https://app.freesearchr.org" class="external-link"><strong><em>FreesearchR</em></strong></a> is free and open-source, and is <a href="https://app.freesearchr.org" class="external-link">accessible in your web browser through this link</a>. The app can also run locally, please <a href="#run-locally-on-your-own-machine-sec-run-locally">see below</a>.</p>
<p>All feedback is welcome and can be shared as a GitHub issue. Any suggestions on collaboration is much welcomed. Please reach out!</p>
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<p><strong>Configuration Variables</strong></p>
<table class="table">
<colgroup>
<col width="22%">
<col width="68%">
<col width="9%">
<col width="19%">
<col width="61%">
<col width="19%">
</colgroup>
<thead><tr class="header">
<th>Variable</th>
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<td>Minimum number of observations a user can set for the lower limit</td>
<td><code>1</code></td>
</tr>
<tr class="odd">
<td><code>CHECK_APP_VERSION</code></td>
<td>Always print version check results. Checks app version against latest release on GitHub.</td>
<td><code>FALSE</code></td>
</tr>
</tbody>
</table>
</div>
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<p>Open the <strong>R console</strong> and run the following code to install the <a href="https://github.com/agdamsbo/FreesearchR" class="external-link">FreesearchR</a> package and launch the app:</p>
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="kw">if</span> <span class="op">(</span><span class="op">!</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://devtools.r-lib.org/" class="external-link">"devtools"</a></span><span class="op">)</span><span class="op">)</span> <span class="fu"><a href="https://rdrr.io/r/utils/install.packages.html" class="external-link">install.packages</a></span><span class="op">(</span><span class="st">"devtools"</span><span class="op">)</span></span>
<span><span class="fu">devtools</span><span class="fu">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_github.html" class="external-link">install_github</a></span><span class="op">(</span><span class="st">"agdamsbo/FreesearchR"</span><span class="op">)</span></span>
<span><span class="fu">devtools</span><span class="fu">::</span><span class="fu"><a href="https://devtools.r-lib.org/reference/install-deprecated.html" class="external-link">install_github</a></span><span class="op">(</span><span class="st">"agdamsbo/FreesearchR"</span><span class="op">)</span></span>
<span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/FreesearchR" class="external-link">FreesearchR</a></span><span class="op">)</span></span>
<span><span class="co"># Load sample data (e.g., mtcars) to make it available in the app</span></span>
<span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">mtcars</span><span class="op">)</span></span>
<span><span class="fu"><a href="reference/launch_FreesearchR.html">launch_FreesearchR</a></span><span class="op">(</span>INCLUDE_GLOBALENV<span class="op">=</span><span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
<span><span class="fu"><a href="reference/launch_FreesearchR.html">launch_FreesearchR</a></span><span class="op">(</span>INCLUDE_GLOBALENV<span class="op">=</span><span class="cn">TRUE</span>,CHECK_APP_VERSION<span class="op">=</span><span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
</li>
</ol>
<p>All the variables specified above can also be passed to the app on launch from R. Set DATA_LIMIT_UPPER=0 to remove upper data limit. This limit is set to protect the online app version from choking and crashing on large data sets.</p>