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22 changed files with 120 additions and 96 deletions
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<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Plot nice ridge plot — data-plots • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Plot nice ridge plot — data-plots"><meta name="description" content="Plot nice ridge plot
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Data correlations evaluation module — data-plots • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Data correlations evaluation module — data-plots"><meta name="description" content="Data correlations evaluation module
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Wrapper to create plot based on provided type
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Nice horizontal stacked bars (Grotta bars)
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Beatiful violin plot
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Beautiful violin plot
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Plot nice ridge plot
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Readying data for sankey plot
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Beautiful sankey plot with option to split by a tertiary group"><meta property="og:description" content="Plot nice ridge plot
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Beautiful sankey plot with option to split by a tertiary group
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Beautiful violin plot
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Beatiful violin plot"><meta property="og:description" content="Data correlations evaluation module
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Wrapper to create plot based on provided type
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Nice horizontal stacked bars (Grotta bars)
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Beatiful violin plot
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Beautiful violin plot
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Plot nice ridge plot
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Readying data for sankey plot
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Beautiful sankey plot with option to split by a tertiary group"></head><body>
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Beautiful sankey plot with option to split by a tertiary group
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Beautiful violin plot
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Beatiful violin plot"></head><body>
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<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
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@ -42,46 +44,63 @@ Beautiful sankey plot with option to split by a tertiary group"></head><body>
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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<h1>Plot nice ridge plot</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/data_plots.R" class="external-link"><code>R/data_plots.R</code></a>, <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/plot_sankey.R" class="external-link"><code>R/plot_sankey.R</code></a></small>
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<h1>Data correlations evaluation module</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/data_plots.R" class="external-link"><code>R/data_plots.R</code></a>, <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/plot_hbar.R" class="external-link"><code>R/plot_hbar.R</code></a>, <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/plot_ridge.R" class="external-link"><code>R/plot_ridge.R</code></a>, and 3 more</small>
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<div class="d-none name"><code>data-plots.Rd</code></div>
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</div>
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<div class="ref-description section level2">
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<p>Plot nice ridge plot</p>
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<p>Data correlations evaluation module</p>
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<p>Wrapper to create plot based on provided type</p>
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<p>Nice horizontal stacked bars (Grotta bars)</p>
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<p>Beatiful violin plot</p>
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<p>Beautiful violin plot</p>
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<p>Plot nice ridge plot</p>
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<p>Readying data for sankey plot</p>
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<p>Beautiful sankey plot with option to split by a tertiary group</p>
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<p>Beautiful violin plot</p>
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<p>Beatiful violin plot</p>
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</div>
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<div class="section level2">
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">plot_ridge</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span>, <span class="va">...</span><span class="op">)</span></span>
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<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">data_visuals_ui</span><span class="op">(</span><span class="va">id</span>, tab_title <span class="op">=</span> <span class="st">"Plots"</span>, <span class="va">...</span><span class="op">)</span></span>
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<span></span>
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<span><span class="fu">data_visuals_server</span><span class="op">(</span><span class="va">id</span>, <span class="va">data</span>, <span class="va">...</span><span class="op">)</span></span>
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<span></span>
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<span><span class="fu">create_plot</span><span class="op">(</span><span class="va">data</span>, <span class="va">type</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span>, <span class="va">...</span><span class="op">)</span></span>
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<span></span>
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<span><span class="fu">plot_hbars</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
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<span></span>
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<span><span class="fu">plot_violin</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
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<span></span>
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<span><span class="fu">plot_scatter</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
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<span><span class="fu">plot_ridge</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span>, <span class="va">...</span><span class="op">)</span></span>
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<span></span>
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<span><span class="fu">sankey_ready</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, numbers <span class="op">=</span> <span class="st">"count"</span>, <span class="va">...</span><span class="op">)</span></span>
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<span></span>
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<span><span class="fu">plot_sankey</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span>, color.group <span class="op">=</span> <span class="st">"x"</span>, colors <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
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<span><span class="fu">plot_sankey</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span>, color.group <span class="op">=</span> <span class="st">"x"</span>, colors <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
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<span></span>
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<span><span class="fu">plot_scatter</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
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<span></span>
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<span><span class="fu">plot_violin</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
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</div>
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<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
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<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
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<dl><dt id="arg-id">id<a class="anchor" aria-label="anchor" href="#arg-id"></a></dt>
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<dd><p>Module id. (Use 'ns("id")')</p></dd>
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<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
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<dd><p>ignored for now</p></dd>
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<dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
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<dd><p>data.frame</p></dd>
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<dt id="arg-type">type<a class="anchor" aria-label="anchor" href="#arg-type"></a></dt>
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<dd><p>plot type (derived from possible_plots() and matches custom function)</p></dd>
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<dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
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<dd><p>primary variable</p></dd>
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@ -93,33 +112,37 @@ Beautiful sankey plot with option to split by a tertiary group"></head><body>
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<dt id="arg-z">z<a class="anchor" aria-label="anchor" href="#arg-z"></a></dt>
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<dd><p>tertiary variable</p></dd>
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<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
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<dd><p>ignored for now</p></dd>
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<dt id="arg-type">type<a class="anchor" aria-label="anchor" href="#arg-type"></a></dt>
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<dd><p>plot type (derived from possible_plots() and matches custom function)</p></dd>
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</dl></div>
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<div class="section level2">
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
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<p>ggplot2 object</p>
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<p>ggplot2 object</p>
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<p>Shiny ui module</p>
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<p>shiny server module</p>
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<p>ggplot2 object</p>
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<p>ggplot2 object</p>
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<p>ggplot2 object</p>
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<p>data.frame</p>
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<p>ggplot2 object</p>
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<p>ggplot2 object</p>
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<p>ggplot2 object</p>
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</div>
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<div class="section level2">
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span></span></span>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">create_plot</span><span class="op">(</span><span class="va">mtcars</span>, <span class="st">"plot_violin"</span>, <span class="st">"mpg"</span>, <span class="st">"cyl"</span><span class="op">)</span></span></span>
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<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in if (!z %in% names(data)) { z <- NULL}:</span> argument is of length zero</span>
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<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_hbars</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"carb"</span>, y <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
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<span class="r-msg co"><span class="r-pr">#></span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
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<span class="r-msg co"><span class="r-pr">#></span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
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<span class="r-plt img"><img src="data-plots-1.png" alt="" width="700" height="433"></span>
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<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_hbars</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"carb"</span>, y <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></span>
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<span class="r-msg co"><span class="r-pr">#></span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
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||||
<span class="r-msg co"><span class="r-pr">#></span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
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<span class="r-plt img"><img src="data-plots-2.png" alt="" width="700" height="433"></span>
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<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span></span></span>
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<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|></span></span></span>
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<span class="r-in"><span> <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
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<span class="r-msg co"><span class="r-pr">#></span> Picking joint bandwidth of 1.38</span>
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<span class="r-plt img"><img src="data-plots-1.png" alt="" width="700" height="433"></span>
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<span class="r-plt img"><img src="data-plots-3.png" alt="" width="700" height="433"></span>
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<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span>, z <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
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<span class="r-msg co"><span class="r-pr">#></span> Picking joint bandwidth of 1.52</span>
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<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>The following aesthetics were dropped during statistical transformation: <span style="color: #00BB00;">y</span> and</span>
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|
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@ -132,44 +155,6 @@ Beautiful sankey plot with option to split by a tertiary group"></head><body>
|
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<span class="r-err co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Error occurred in the 1st layer.</span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span style="font-weight: bold;">Caused by error in `compute_geom_1()`:</span></span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> `geom_density_ridges()` requires the following missing aesthetics: <span style="color: #00BB00;">y</span>.</span>
|
||||
<span class="r-in"><span><span class="fu">create_plot</span><span class="op">(</span><span class="va">mtcars</span>, <span class="st">"plot_violin"</span>, <span class="st">"mpg"</span>, <span class="st">"cyl"</span><span class="op">)</span></span></span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in if (!z %in% names(data)) { z <- NULL}:</span> argument is of length zero</span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_hbars</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"carb"</span>, y <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
|
||||
<span class="r-plt img"><img src="data-plots-2.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_hbars</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"carb"</span>, y <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
|
||||
<span class="r-plt img"><img src="data-plots-3.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_violin</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span>, z <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 1: `cyl = 4`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 1: `cyl = 4`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 2: `cyl = 6`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 2: `cyl = 6`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
|
||||
<span class="r-plt img"><img src="data-plots-4.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_scatter</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"wt"</span><span class="op">)</span></span></span>
|
||||
<span class="r-plt img"><img src="data-plots-5.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-in"><span><span class="va">ds</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>g <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">LETTERS</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">2</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span>, first <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span>, last <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="cn">NA</span><span class="op">)</span>, <span class="fl">100</span>, <span class="cn">TRUE</span>, prob <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">.23</span>, <span class="fl">4</span><span class="op">)</span>, <span class="fl">.08</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">ds</span> <span class="op">|></span> <span class="fu">sankey_ready</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 19 × 7</span></span>
|
||||
|
|
@ -237,10 +222,56 @@ Beautiful sankey plot with option to split by a tertiary group"></head><body>
|
|||
<span class="r-in"><span><span class="va">ds</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>g <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">LETTERS</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">2</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span>, first <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span>, last <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">ds</span> <span class="op">|></span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> Loading required package: ggplot2</span>
|
||||
<span class="r-plt img"><img src="data-plots-6.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-plt img"><img src="data-plots-4.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-in"><span><span class="va">ds</span> <span class="op">|></span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, color.group <span class="op">=</span> <span class="st">"y"</span><span class="op">)</span></span></span>
|
||||
<span class="r-plt img"><img src="data-plots-7.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-plt img"><img src="data-plots-5.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-in"><span><span class="va">ds</span> <span class="op">|></span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, z <span class="op">=</span> <span class="st">"g"</span>, color.group <span class="op">=</span> <span class="st">"y"</span><span class="op">)</span></span></span>
|
||||
<span class="r-plt img"><img src="data-plots-6.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_scatter</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"wt"</span><span class="op">)</span></span></span>
|
||||
<span class="r-plt img"><img src="data-plots-7.png" alt="" width="700" height="433"></span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_violin</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span>, z <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 1: `cyl = 4`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 1: `cyl = 4`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 2: `cyl = 6`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 2: `cyl = 6`.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Removed 2 rows containing non-finite outside the scale range</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> (`stat_ydensity()`).</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Removed 1 row containing missing values or values outside the scale range</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> (`geom_point()`).</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Removed 4 rows containing non-finite outside the scale range</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> (`stat_ydensity()`).</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Removed 1 row containing missing values or values outside the scale range</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> (`geom_point()`).</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Removed 1 row containing non-finite outside the scale range</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> (`stat_ydensity()`).</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Removed 1 row containing missing values or values outside the scale range</span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> (`geom_point()`).</span>
|
||||
<span class="r-plt img"><img src="data-plots-8.png" alt="" width="700" height="433"></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue