polish and move to new hosted address

2025-09-12 09:59:39 +02:00 · 2025-04-24 11:00:56 +02:00 · 2025-04-24 11:00:56 +02:00 · 54ba126a8b
commit 54ba126a8b
parent 20ae86a346
14 changed files with 111 additions and 48 deletions
--- a/2
+++ b/2
@ -1,6 +1,6 @@
 Package: FreesearchR
 Title: Browser Based Data Analysis
-Version: 25.4.3
+Version: 25.4.4
 Authors@R: 
    person("Andreas Gammelgaard", "Damsbo", , "agdamsbo@clin.au.dk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7559-1154"))
--- a/NEWS.md
+++ b/NEWS.md
@ -1,3 +1,7 @@
+# FreesearchR 25.4.4
+
+Polishing and moved hosted app to new address to fully reflect name change: [https://agdamsbo.shinyapps.io/FreesearchR/](https://agdamsbo.shinyapps.io/FreesearchR/)
+
 # FreesearchR 25.4.3

 - *NEW*: Added a variables type filter to easily exclude unwanted types. This also includes having data type rather than data class in the summary table. Will evaluate. Types are a simpler, more practical version of the *R* data class to easy interpretation.
--- a/R/app_version.R
+++ b/R/app_version.R
@ -1 +1 @@
-app_version <- function()'v25.4.3.250423'
+app_version <- function()'v25.4.4.250424'
--- a/R/cut-variable-dates.R
+++ b/R/cut-variable-dates.R
@ -56,6 +56,7 @@ cut_var.hms <- function(x, breaks, ...) {
 #' readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks = "weekday")
 #' readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks = "month_only")
 #' readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks=NULL,format = "%A-%H")
+#' readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks=NULL,format = "%W")
 cut_var.POSIXt <- function(x, breaks, right = FALSE, include.lowest = TRUE, start.on.monday = TRUE, ...) {
  breaks_o <- breaks
  args <- list(...)
@ -126,7 +127,10 @@ cut_var.POSIXct <- cut_var.POSIXt
 #' @examples
 #' as.Date(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(2)
 #' as.Date(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks = "weekday")
-cut_var.Date <- function(x, breaks, start.on.monday = TRUE, ...) {
+#' as.Date(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(format = "%W")
+cut_var.Date <- function(x, breaks=NULL, start.on.monday = TRUE, ...) {
+  args <- list(...)
+
  if ("format" %in% names(args)){
    assertthat::assert_that(is.character(args$format))
    out <- forcats::as_factor(format(x,format=args$format))
@ -337,10 +341,11 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
        variable <- req(input$variable)

        choices <- c(
+          # "fixed",
          # "quantile"
        )

-        if ("hms" %in% class(data[[variable]])) {
+        if (any(c("hms","POSIXct") %in% class(data[[variable]]))) {
          choices <- c(choices, "hour")
        } else if (any(c("POSIXt", "Date") %in% class(data[[variable]]))) {
          choices <- c(
@ -348,6 +353,7 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
            "day",
            "weekday",
            "week",
+            # "week_only",
            "month",
            "month_only",
            "quarter",
@ -372,6 +378,8 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
          )
        }

+        choices <- unique(choices)
+
        shinyWidgets::virtualSelectInput(
          inputId = session$ns("method"),
          label = i18n("Method:"),
@ -389,7 +397,7 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
        req(input$n_breaks, input$method)
        if (input$method == "fixed") {
          req(input$fixed_brks)
-          if (any(c("hms", "POSIXt") %in% class(data[[variable]]))) {
+          if (any(c("hms", "POSIXct") %in% class(data[[variable]]))) {
            # cut.POSIXct <- cut.POSIXt
            f <- cut_var(data[[variable]], breaks = input$fixed_brks)
            list(var = f, brks = levels(f))
@ -432,6 +440,11 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
          # cut.POSIXct <- cut.POSIXt
          f <- cut_var(data[[variable]], breaks = "hour")
          list(var = f, brks = levels(f))
+        # } else if (input$method %in% c("week_only")) {
+        #   # As a proof of concept a single option to use "format" parameter
+        #   # https://www.stat.berkeley.edu/~s133/dates.html
+        #   f <- cut_var(data[[variable]], format = "%W")
+        #   list(var = f, brks = levels(f))
        } else {
          classInt::classIntervals(
            var = as.numeric(data[[variable]]),
@ -445,6 +458,7 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
        data <- req(data_r())
        variable <- req(input$variable)
        plot_histogram(data, variable, breaks = breaks_r()$brks, color = datamods:::get_primary_color())
+        # plot_histogram(data = breaks_r()$var, breaks = breaks_r()$brks, color = datamods:::get_primary_color())
      })


@ -582,8 +596,13 @@ modal_cut_variable <- function(id,


 #' @importFrom graphics abline axis hist par plot.new plot.window
-plot_histogram <- function(data, column, bins = 30, breaks = NULL, color = "#112466") {
+plot_histogram <- function(data, column=NULL, bins = 30, breaks = NULL, color = "#112466") {
+  if (is.vector(data)){
+    x <- data
+  } else {
  x <- data[[column]]
+
+  }
  x <- as.numeric(x)
  op <- par(mar = rep(1.5, 4))
  on.exit(par(op))
--- a/R/sysdata.rda
+++ b/R/sysdata.rda
--- a/README.md
+++ b/README.md
@ -4,12 +4,12 @@
 [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14527429.svg)](https://doi.org/10.5281/zenodo.14527429) 
 [![rhub](https://github.com/agdamsbo/FreesearchR/actions/workflows/rhub.yaml/badge.svg)](https://github.com/agdamsbo/FreesearchR/actions/workflows/rhub.yaml)
-[![FreesearchR](https://img.shields.io/badge/Shiny-shinyapps.io-blue?style=flat&labelColor=white&logo=RStudio&logoColor=blue)](https://agdamsbo.shinyapps.io/freesearcheR/)
+[![FreesearchR](https://img.shields.io/badge/Shiny-shinyapps.io-blue?style=flat&labelColor=white&logo=RStudio&logoColor=blue)](https://agdamsbo.shinyapps.io/FreesearchR/)
 <!-- badges: end -->

 This package is the backbone of the ***FreesearchR***, a free and open-source browser based data exploration and analysis tool intended to democratise clinical research by assisting any researcher to easily evaluate and analyse data and export publication ready results.

-The ***FreesearchR***-tool is online and accessible here: [link to the app freely hosted on shinyapps.io](https://agdamsbo.shinyapps.io/FreesearcheR/). All feedback is welcome and can be shared as a GitHub issue. Any suggestions on collaboration is much welcomed. Please reach out!
+The ***FreesearchR***-tool is online and accessible here: [link to the app freely hosted on shinyapps.io](https://agdamsbo.shinyapps.io/FreesearchR/). All feedback is welcome and can be shared as a GitHub issue. Any suggestions on collaboration is much welcomed. Please reach out!

 ## Motivation

--- a/SESSION.md
+++ b/SESSION.md
@ -11,11 +11,11 @@
 |collate     |en_US.UTF-8                                |
 |ctype       |en_US.UTF-8                                |
 |tz          |Europe/Copenhagen                          |
-|date        |2025-04-23                                 |
+|date        |2025-04-24                                 |
 |rstudio     |2024.12.1+563 Kousa Dogwood (desktop)      |
 |pandoc      |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) |
 |quarto      |1.6.40 @ /usr/local/bin/quarto             |
-|FreesearchR |25.4.3.250423                              |
+|FreesearchR |25.4.4.250424                              |
                                                                                
                                                                                
 --------------------------------------------------------------------------------
@ -40,7 +40,7 @@
 |class         |7.3-23        |2025-01-01 |CRAN (R 4.4.1) |
 |classInt      |0.4-11        |2025-01-08 |CRAN (R 4.4.1) |
 |cli           |3.6.4         |2025-02-13 |CRAN (R 4.4.1) |
-|clipr         |0.8.0         |2022-02-22 |CRAN (R 4.4.1) |
+|codetools     |0.2-20        |2024-03-31 |CRAN (R 4.4.1) |
 |colorspace    |2.1-1         |2024-07-26 |CRAN (R 4.4.1) |
 |commonmark    |1.9.5         |2025-03-17 |CRAN (R 4.4.1) |
 |correlation   |0.8.7         |2025-03-03 |CRAN (R 4.4.1) |
@ -66,9 +66,11 @@
 |fastmap       |1.2.0         |2024-05-15 |CRAN (R 4.4.1) |
 |fontawesome   |0.5.3         |2024-11-16 |CRAN (R 4.4.1) |
 |forcats       |1.0.0         |2023-01-29 |CRAN (R 4.4.0) |
+|foreach       |1.5.2         |2022-02-02 |CRAN (R 4.4.0) |
 |fs            |1.6.6         |2025-04-12 |CRAN (R 4.4.1) |
 |generics      |0.1.3         |2022-07-05 |CRAN (R 4.4.1) |
 |ggplot2       |3.5.2         |2025-04-09 |CRAN (R 4.4.1) |
+|glmnet        |4.1-8         |NA         |NA             |
 |glue          |1.8.0         |2024-09-30 |CRAN (R 4.4.1) |
 |gt            |1.0.0         |2025-04-05 |CRAN (R 4.4.1) |
 |gtable        |0.3.6         |2024-10-25 |CRAN (R 4.4.1) |
@ -81,6 +83,7 @@
 |httpuv        |1.6.16        |2025-04-16 |CRAN (R 4.4.1) |
 |IDEAFilter    |0.2.0         |2024-04-15 |CRAN (R 4.4.0) |
 |insight       |1.2.0         |2025-04-22 |CRAN (R 4.4.1) |
+|iterators     |1.0.14        |2022-02-05 |CRAN (R 4.4.1) |
 |jquerylib     |0.1.4         |2021-04-26 |CRAN (R 4.4.0) |
 |jsonlite      |2.0.0         |2025-03-27 |CRAN (R 4.4.1) |
 |KernSmooth    |2.23-26       |2025-01-01 |CRAN (R 4.4.1) |
@ -90,7 +93,6 @@
 |lattice       |0.22-7        |2025-04-02 |CRAN (R 4.4.1) |
 |lifecycle     |1.0.4         |2023-11-07 |CRAN (R 4.4.1) |
 |lme4          |1.1-37        |2025-03-26 |CRAN (R 4.4.1) |
-|magick        |2.8.6         |NA         |NA             |
 |magrittr      |2.0.3         |2022-03-30 |CRAN (R 4.4.1) |
 |MASS          |7.3-65        |2025-02-28 |CRAN (R 4.4.1) |
 |Matrix        |1.7-3         |2025-03-11 |CRAN (R 4.4.1) |
@ -104,7 +106,6 @@
 |nloptr        |2.2.1         |2025-03-17 |CRAN (R 4.4.1) |
 |openssl       |2.3.2         |2025-02-03 |CRAN (R 4.4.1) |
 |openxlsx2     |1.14          |2025-03-20 |CRAN (R 4.4.1) |
-|pak           |0.8.0.2       |2025-04-08 |CRAN (R 4.4.1) |
 |parameters    |0.24.2        |2025-03-04 |CRAN (R 4.4.1) |
 |patchwork     |1.3.0         |2024-09-16 |CRAN (R 4.4.1) |
 |performance   |0.13.0        |2025-01-15 |CRAN (R 4.4.1) |
@ -112,7 +113,6 @@
 |pillar        |1.10.2        |2025-04-05 |CRAN (R 4.4.1) |
 |pkgbuild      |1.4.7         |2025-03-24 |CRAN (R 4.4.1) |
 |pkgconfig     |2.0.3         |2019-09-22 |CRAN (R 4.4.1) |
-|pkgdown       |2.1.1         |2024-09-17 |CRAN (R 4.4.1) |
 |pkgload       |1.4.0         |2024-06-28 |CRAN (R 4.4.0) |
 |processx      |3.8.6         |2025-02-21 |CRAN (R 4.4.1) |
 |profvis       |0.4.0         |2024-09-20 |CRAN (R 4.4.1) |
@ -122,6 +122,7 @@
 |purrr         |1.0.4         |2025-02-05 |CRAN (R 4.4.1) |
 |quarto        |1.4.4         |2024-07-20 |CRAN (R 4.4.0) |
 |R6            |2.6.1         |2025-02-15 |CRAN (R 4.4.1) |
+|ragg          |1.4.0         |2025-04-10 |CRAN (R 4.4.1) |
 |rbibutils     |2.3           |2024-10-04 |CRAN (R 4.4.1) |
 |RColorBrewer  |1.1-3         |2022-04-03 |CRAN (R 4.4.1) |
 |Rcpp          |1.0.14        |2025-01-12 |CRAN (R 4.4.1) |
@ -130,6 +131,8 @@
 |readODS       |2.3.2         |2025-01-13 |CRAN (R 4.4.1) |
 |readr         |2.1.5         |2024-01-10 |CRAN (R 4.4.0) |
 |readxl        |1.4.5         |2025-03-07 |CRAN (R 4.4.1) |
+|REDCapCAST    |25.3.2        |2025-03-10 |CRAN (R 4.4.1) |
+|REDCapR       |1.4.0         |2025-01-11 |CRAN (R 4.4.1) |
 |reformulas    |0.4.0         |2024-11-03 |CRAN (R 4.4.1) |
 |remotes       |2.5.0         |2024-03-17 |CRAN (R 4.4.1) |
 |renv          |1.1.4         |2025-03-20 |CRAN (R 4.4.1) |
@ -144,11 +147,16 @@
 |scales        |1.3.0         |2023-11-28 |CRAN (R 4.4.0) |
 |see           |0.11.0        |2025-03-11 |CRAN (R 4.4.1) |
 |sessioninfo   |1.2.3         |2025-02-05 |CRAN (R 4.4.1) |
+|shape         |1.4.6.1       |NA         |NA             |
 |shiny         |1.10.0        |2024-12-14 |CRAN (R 4.4.1) |
 |shinybusy     |0.3.3         |2024-03-09 |CRAN (R 4.4.0) |
 |shinyTime     |1.0.3         |2022-08-19 |CRAN (R 4.4.0) |
 |shinyWidgets  |0.9.0         |2025-02-21 |CRAN (R 4.4.1) |
 |stringi       |1.8.7         |2025-03-27 |CRAN (R 4.4.1) |
+|stringr       |1.5.1         |2023-11-14 |CRAN (R 4.4.0) |
+|survival      |3.8-3         |2024-12-17 |CRAN (R 4.4.1) |
+|systemfonts   |1.2.2         |2025-04-04 |CRAN (R 4.4.1) |
+|textshaping   |1.0.0         |2025-01-20 |CRAN (R 4.4.1) |
 |tibble        |3.2.1         |2023-03-20 |CRAN (R 4.4.0) |
 |tidyr         |1.3.1         |2024-01-24 |CRAN (R 4.4.1) |
 |tidyselect    |1.2.1         |2024-03-11 |CRAN (R 4.4.0) |
--- a/inst/apps/FreesearchR/app.R
+++ b/inst/apps/FreesearchR/app.R
@ -10,7 +10,7 @@
 #### Current file: /Users/au301842/FreesearchR/R//app_version.R 
 ########

-app_version <- function()'v25.4.3.250423'
+app_version <- function()'v25.4.4.250424'


 ########
@ -556,6 +556,7 @@ cut_var.hms <- function(x, breaks, ...) {
 #' readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks = "weekday")
 #' readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks = "month_only")
 #' readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks=NULL,format = "%A-%H")
+#' readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks=NULL,format = "%W")
 cut_var.POSIXt <- function(x, breaks, right = FALSE, include.lowest = TRUE, start.on.monday = TRUE, ...) {
  breaks_o <- breaks
  args <- list(...)
@ -626,7 +627,10 @@ cut_var.POSIXct <- cut_var.POSIXt
 #' @examples
 #' as.Date(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(2)
 #' as.Date(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(breaks = "weekday")
-cut_var.Date <- function(x, breaks, start.on.monday = TRUE, ...) {
+#' as.Date(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")) |> cut_var(format = "%W")
+cut_var.Date <- function(x, breaks=NULL, start.on.monday = TRUE, ...) {
+  args <- list(...)
+
  if ("format" %in% names(args)){
    assertthat::assert_that(is.character(args$format))
    out <- forcats::as_factor(format(x,format=args$format))
@ -837,10 +841,11 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
        variable <- req(input$variable)

        choices <- c(
+          # "fixed",
          # "quantile"
        )

-        if ("hms" %in% class(data[[variable]])) {
+        if (any(c("hms","POSIXct") %in% class(data[[variable]]))) {
          choices <- c(choices, "hour")
        } else if (any(c("POSIXt", "Date") %in% class(data[[variable]]))) {
          choices <- c(
@ -848,6 +853,7 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
            "day",
            "weekday",
            "week",
+            # "week_only",
            "month",
            "month_only",
            "quarter",
@ -872,6 +878,8 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
          )
        }

+        choices <- unique(choices)
+
        shinyWidgets::virtualSelectInput(
          inputId = session$ns("method"),
          label = i18n("Method:"),
@ -889,7 +897,7 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
        req(input$n_breaks, input$method)
        if (input$method == "fixed") {
          req(input$fixed_brks)
-          if (any(c("hms", "POSIXt") %in% class(data[[variable]]))) {
+          if (any(c("hms", "POSIXct") %in% class(data[[variable]]))) {
            # cut.POSIXct <- cut.POSIXt
            f <- cut_var(data[[variable]], breaks = input$fixed_brks)
            list(var = f, brks = levels(f))
@ -932,6 +940,11 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
          # cut.POSIXct <- cut.POSIXt
          f <- cut_var(data[[variable]], breaks = "hour")
          list(var = f, brks = levels(f))
+        # } else if (input$method %in% c("week_only")) {
+        #   # As a proof of concept a single option to use "format" parameter
+        #   # https://www.stat.berkeley.edu/~s133/dates.html
+        #   f <- cut_var(data[[variable]], format = "%W")
+        #   list(var = f, brks = levels(f))
        } else {
          classInt::classIntervals(
            var = as.numeric(data[[variable]]),
@ -945,6 +958,7 @@ cut_variable_server <- function(id, data_r = reactive(NULL)) {
        data <- req(data_r())
        variable <- req(input$variable)
        plot_histogram(data, variable, breaks = breaks_r()$brks, color = datamods:::get_primary_color())
+        # plot_histogram(data = breaks_r()$var, breaks = breaks_r()$brks, color = datamods:::get_primary_color())
      })


@ -1082,8 +1096,13 @@ modal_cut_variable <- function(id,


 #' @importFrom graphics abline axis hist par plot.new plot.window
-plot_histogram <- function(data, column, bins = 30, breaks = NULL, color = "#112466") {
+plot_histogram <- function(data, column=NULL, bins = 30, breaks = NULL, color = "#112466") {
+  if (is.vector(data)){
+    x <- data
+  } else {
  x <- data[[column]]
+
+  }
  x <- as.numeric(x)
  op <- par(mar = rep(1.5, 4))
  on.exit(par(op))
@ -8739,7 +8758,7 @@ ui_elements <- list(
          shiny::tagList(
            lapply(
              paste0("code_", c(
-                "import", "data", "variables", "filter", "table1", "univariable", "multivariable"
+                "import", "format", "data", "variables", "filter", "table1", "univariable", "multivariable"
              )),
              \(.x)shiny::htmlOutput(outputId = .x)
            )
@ -8861,7 +8880,8 @@ library(gtsummary)

 data(starwars)
 data(mtcars)
-mtcars <- mtcars |> append_column(as.Date(sample(1:365, nrow(mtcars))), "rand_dates")
+mtcars_date <- mtcars |> append_column(as.Date(sample(1:365, nrow(mtcars))), "rand_dates")
+mtcars_date$date <- as.Date(sample(seq_len(365),nrow(mtcars)))
 data(trial)


@ -9018,8 +9038,11 @@ server <- function(input, output, session) {
      rv$data_original <- temp_data |>
        default_parsing()

-      rv$code$import_print <- list(
-        rv$code$import,
+      rv$code$import <- rv$code$import |>
+        expression_string(assign.str = "df <-")
+
+      rv$code$format <- list(
+        "df",
        rlang::expr(dplyr::select(dplyr::all_of(!!input$import_var))),
        rlang::call2(.fn = "default_parsing", .ns = "FreesearchR")
      ) |>
@ -9304,7 +9327,11 @@ server <- function(input, output, session) {
  # })

  output$code_import <- shiny::renderUI({
-    prismCodeBlock(paste0("#Data import\n", rv$code$import_print))
+    prismCodeBlock(paste0("#Data import\n", rv$code$import))
+  })
+
+  output$code_import <- shiny::renderUI({
+    prismCodeBlock(paste0("#Data import formatting\n", rv$code$format))
  })

  output$code_data <- shiny::renderUI({
--- a/inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/FreesearchR.dcf
+++ b/inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/FreesearchR.dcf
@ -0,0 +1,10 @@
+name: FreesearchR
+title:
+username: agdamsbo
+account: agdamsbo
+server: shinyapps.io
+hostUrl: https://api.shinyapps.io/v1
+appId: 14600805
+bundleId: 10169595
+url: https://agdamsbo.shinyapps.io/FreesearchR/
+version: 1
--- a/inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/freesearcheR.dcf
+++ b/inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/freesearcheR.dcf
@ -5,6 +5,6 @@ account: agdamsbo
 server: shinyapps.io
 hostUrl: https://api.shinyapps.io/v1
 appId: 13611288
-bundleId: 10164419
+bundleId: 10164589
 url: https://agdamsbo.shinyapps.io/freesearcheR/
 version: 1
--- a/inst/apps/FreesearchR/server.R
+++ b/inst/apps/FreesearchR/server.R
@ -32,7 +32,8 @@ library(gtsummary)

 data(starwars)
 data(mtcars)
-mtcars <- mtcars |> append_column(as.Date(sample(1:365, nrow(mtcars))), "rand_dates")
+mtcars_date <- mtcars |> append_column(as.Date(sample(1:365, nrow(mtcars))), "rand_dates")
+mtcars_date$date <- as.Date(sample(seq_len(365),nrow(mtcars)))
 data(trial)


@ -189,8 +190,11 @@ server <- function(input, output, session) {
      rv$data_original <- temp_data |>
        default_parsing()

-      rv$code$import_print <- list(
-        rv$code$import,
+      rv$code$import <- rv$code$import |>
+        expression_string(assign.str = "df <-")
+
+      rv$code$format <- list(
+        "df",
        rlang::expr(dplyr::select(dplyr::all_of(!!input$import_var))),
        rlang::call2(.fn = "default_parsing", .ns = "FreesearchR")
      ) |>
@ -475,7 +479,11 @@ server <- function(input, output, session) {
  # })

  output$code_import <- shiny::renderUI({
-    prismCodeBlock(paste0("#Data import\n", rv$code$import_print))
+    prismCodeBlock(paste0("#Data import\n", rv$code$import))
+  })
+
+  output$code_import <- shiny::renderUI({
+    prismCodeBlock(paste0("#Data import formatting\n", rv$code$format))
  })

  output$code_data <- shiny::renderUI({
--- a/inst/apps/FreesearchR/ui.R
+++ b/inst/apps/FreesearchR/ui.R
@ -462,7 +462,7 @@ ui_elements <- list(
          shiny::tagList(
            lapply(
              paste0("code_", c(
-                "import", "data", "variables", "filter", "table1", "univariable", "multivariable"
+                "import", "format", "data", "variables", "filter", "table1", "univariable", "multivariable"
              )),
              \(.x)shiny::htmlOutput(outputId = .x)
            )
--- a/inst/apps/FreesearchR/www/references.bib
+++ b/inst/apps/FreesearchR/www/references.bib
@ -1,24 +1,11 @@

@book{andreasgammelgaarddamsbo2025,
-	title = {agdamsbo/freesearcheR: freesearcheR 25.3.1},
-	author = {Andreas Gammelgaard Damsbo, },
+	title = {agdamsbo/FreesearchR: FreesearchR 25.4.3},
+	author = {Damsbo, Andreas Gammelgaard},
 	year = {2025},
-	month = {03},
-	date = {2025-03-06},
+	month = {04},
+	date = {2025-04-24},
 	publisher = {Zenodo},
 	doi = {10.5281/ZENODO.14527429},
 	url = {https://zenodo.org/doi/10.5281/zenodo.14527429}
 }
-
-@article{Aam2020,
-	title = {Post-stroke Cognitive Impairment{\textemdash}Impact of Follow-Up Time and Stroke Subtype on Severity and Cognitive Profile: The Nor-COAST Study},
-	author = {Aam, Stina and Einstad, Marte Stine and Munthe-Kaas, Ragnhild and Lydersen, Stian and Ihle-Hansen, Hege and Knapskog, Anne Brita and {Ellekjær}, Hanne and Seljeseth, Yngve and Saltvedt, Ingvild},
-	year = {2020},
-	date = {2020},
-	journal = {Frontiers in Neurology},
-	pages = {1--10},
-	volume = {11},
-	number = {July},
-	doi = {10.3389/fneur.2020.00699},
-	note = {Citation Key: Aam2020}
-}
--- a/umami-page.html
+++ b/umami-page.html
@ -1 +1 @@
-<script defer src="https://analytics.gdamsbo.dk/script.js" data-website-id="1f3baf18-29aa-4612-931b-58ea35922ae4"></script>
+<script defer src="https://analytics.gdamsbo.dk/script.js" data-website-id="e7d4e13a-5824-4778-bbc0-8f92fb08303a"></script>