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organising plotting functions - nicer plot wrapping - merge mulitple workbook sheets

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Andreas Gammelgaard Damsbo 2025-03-13 12:41:50 +01:00
commit 49016a4aa8
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20 changed files with 1615 additions and 910 deletions
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1219
inst/apps/freesearcheR/app.R
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35
inst/apps/freesearcheR/server.R
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@ -93,23 +93,13 @@ server <- function(input, output, session) {
#########
##############################################################################
consider.na <- c("NA", "\"\"", "", "\'\'", "na")
data_file <- import_file_server(
id = "file_import",
show_data_in = "popup",
trigger_return = "change",
return_class = "data.frame",
read_fns = list(
ods = function(file, which, skip, na) {
readODS::read_ods(
path = file,
# Sheet and skip not implemented for .ods in the original implementation
sheet = which,
skip = skip,
na = na
)
},
ods = import_ods,
dta = function(file) {
haven::read_dta(
file = file,
@ -126,24 +116,8 @@ server <- function(input, output, session) {
csv = import_delim,
tsv = import_delim,
txt = import_delim,
xls = function(file, which, skip, na) {
openxlsx2::read_xlsx(
file = file,
sheet = which,
skip_empty_rows = TRUE,
start_row = skip - 1,
na.strings = na
)
},
xlsx = function(file, which, skip, na) {
openxlsx2::read_xlsx(
file = file,
sheet = sheet,
skip_empty_rows = TRUE,
start_row = skip - 1,
na.strings = na
)
},
xls = import_xls,
xlsx = import_xls,
rds = function(file) {
readr::read_rds(
file = file,
@ -160,8 +134,7 @@ server <- function(input, output, session) {
})
data_redcap <- m_redcap_readServer(
id = "redcap_import" # ,
# output.format = "list"
id = "redcap_import"
)
shiny::observeEvent(data_redcap(), {

7
inst/apps/freesearcheR/ui.R
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@ -49,13 +49,16 @@ ui_elements <- list(
import_file_ui(
id = "file_import",
layout_params = "dropdown",
title = "Choose a datafile to upload",
# title = "Choose a datafile to upload",
file_extensions = c(".csv", ".tsv", ".txt", ".xls", ".xlsx", ".rds", ".sas7bdat", ".ods", ".dta")
)
),
shiny::conditionalPanel(
condition = "input.source=='redcap'",
m_redcap_readUI("redcap_import")
m_redcap_readUI(
id = "redcap_import",
title = ""
)
),
shiny::conditionalPanel(
condition = "input.source=='env'",