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catching missed functions

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Andreas Gammelgaard Damsbo 2025-05-16 16:08:52 +02:00
parent a05c993c8c
commit 3e5f998263
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2 changed files with 85 additions and 72 deletions
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26
R/update-factor-ext.R
View file

@ -45,8 +45,8 @@ update_factor_ui <- function(id) {
actionButton( actionButton(
inputId = ns("sort_levels"), inputId = ns("sort_levels"),
label = tagList( label = tagList(
ph("sort-ascending"), phosphoricons::ph("sort-ascending"),
i18n("Sort by levels") datamods:::i18n("Sort by levels")
), ),
class = "btn-outline-primary mb-3", class = "btn-outline-primary mb-3",
width = "100%" width = "100%"
@ -58,8 +58,8 @@ update_factor_ui <- function(id) {
actionButton( actionButton(
inputId = ns("sort_occurrences"), inputId = ns("sort_occurrences"),
label = tagList( label = tagList(
ph("sort-ascending"), phosphoricons::ph("sort-ascending"),
i18n("Sort by count") datamods:::i18n("Sort by count")
), ),
class = "btn-outline-primary mb-3", class = "btn-outline-primary mb-3",
width = "100%" width = "100%"
@ -71,7 +71,7 @@ update_factor_ui <- function(id) {
class = "float-end", class = "float-end",
shinyWidgets::prettyCheckbox( shinyWidgets::prettyCheckbox(
inputId = ns("new_var"), inputId = ns("new_var"),
label = i18n("Create a new variable (otherwise replaces the one selected)"), label = datamods:::i18n("Create a new variable (otherwise replaces the one selected)"),
value = FALSE, value = FALSE,
status = "primary", status = "primary",
outline = TRUE, outline = TRUE,
@ -79,7 +79,7 @@ update_factor_ui <- function(id) {
), ),
actionButton( actionButton(
inputId = ns("create"), inputId = ns("create"),
label = tagList(ph("arrow-clockwise"), i18n("Update factor variable")), label = tagList(phosphoricons::ph("arrow-clockwise"), datamods:::i18n("Update factor variable")),
class = "btn-outline-primary" class = "btn-outline-primary"
) )
), ),
@ -127,13 +127,13 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
if (input$sort_levels %% 2 == 1) { if (input$sort_levels %% 2 == 1) {
decreasing <- FALSE decreasing <- FALSE
label <- tagList( label <- tagList(
ph("sort-descending"), phosphoricons::ph("sort-descending"),
"Sort Levels" "Sort Levels"
) )
} else { } else {
decreasing <- TRUE decreasing <- TRUE
label <- tagList( label <- tagList(
ph("sort-ascending"), phosphoricons::ph("sort-ascending"),
"Sort Levels" "Sort Levels"
) )
} }
@ -145,14 +145,14 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
if (input$sort_occurrences %% 2 == 1) { if (input$sort_occurrences %% 2 == 1) {
decreasing <- FALSE decreasing <- FALSE
label <- tagList( label <- tagList(
ph("sort-descending"), phosphoricons::ph("sort-descending"),
i18n("Sort count") datamods:::i18n("Sort count")
) )
} else { } else {
decreasing <- TRUE decreasing <- TRUE
label <- tagList( label <- tagList(
ph("sort-ascending"), phosphoricons::ph("sort-ascending"),
i18n("Sort count") datamods:::i18n("Sort count")
) )
} }
updateActionButton(inputId = "sort_occurrences", label = as.character(label)) updateActionButton(inputId = "sort_occurrences", label = as.character(label))
@ -179,7 +179,7 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
grid <- grid_columns( grid <- grid_columns(
grid, grid,
columns = c("Var1", "Var1_toset", "Freq"), columns = c("Var1", "Var1_toset", "Freq"),
header = c(i18n("Levels"), "New label", i18n("Count")) header = c(datamods:::i18n("Levels"), "New label", datamods:::i18n("Count"))
) )
grid <- grid_colorbar( grid <- grid_colorbar(
grid, grid,

131
inst/apps/FreesearchR/app.R
View file

@ -1,7 +1,7 @@
######## ########
#### Current file: /Users/au301842/FreesearchR/app/libs.R #### Current file: /Users/au301842/FreesearchR/app/libs.R
######## ########
library(shiny) library(shiny)
@ -40,20 +40,20 @@ library(rlang)
######## ########
#### Current file: /Users/au301842/FreesearchR/app/functions.R #### Current file: /Users/au301842/FreesearchR/app/functions.R
######## ########
######## ########
#### Current file: /Users/au301842/FreesearchR/R//app_version.R #### Current file: /Users/au301842/FreesearchR/R//app_version.R
######## ########
app_version <- function()'25.5.5' app_version <- function()'25.5.5'
######## ########
#### Current file: /Users/au301842/FreesearchR/R//baseline_table.R #### Current file: /Users/au301842/FreesearchR/R//baseline_table.R
######## ########
#' Print a flexible baseline characteristics table #' Print a flexible baseline characteristics table
@ -138,7 +138,7 @@ create_baseline <- function(data, ..., by.var, add.p = FALSE, add.overall = FALS
######## ########
#### Current file: /Users/au301842/FreesearchR/R//contrast_text.R #### Current file: /Users/au301842/FreesearchR/R//contrast_text.R
######## ########
#' @title Contrast Text Color #' @title Contrast Text Color
@ -194,7 +194,7 @@ contrast_text <- function(background,
######## ########
#### Current file: /Users/au301842/FreesearchR/R//correlations-module.R #### Current file: /Users/au301842/FreesearchR/R//correlations-module.R
######## ########
#' Data correlations evaluation module #' Data correlations evaluation module
@ -339,7 +339,7 @@ sentence_paste <- function(data, and.str = "and") {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//create-column-mod.R #### Current file: /Users/au301842/FreesearchR/R//create-column-mod.R
######## ########
#' @title Create new column #' @title Create new column
@ -531,7 +531,7 @@ create_column_server <- function(id,
if (input$new_column == "") { if (input$new_column == "") {
rv$feedback <- shinyWidgets::alert( rv$feedback <- shinyWidgets::alert(
status = "warning", status = "warning",
ph("warning"), datamods::i18n("New column name cannot be empty") phosphoricons::ph("warning"), datamods::i18n("New column name cannot be empty")
) )
} }
}) })
@ -695,7 +695,7 @@ try_compute_column <- function(expression,
) )
shinyWidgets::alert( shinyWidgets::alert(
status = "success", status = "success",
ph("check"), datamods::i18n("Column added!") phosphoricons::ph("check"), datamods::i18n("Column added!")
) )
} }
@ -718,7 +718,7 @@ extract_calls <- function(exp) {
alert_error <- function(text) { alert_error <- function(text) {
alert( alert(
status = "danger", status = "danger",
ph("bug"), text phosphoricons::ph("bug"), text
) )
} }
@ -782,7 +782,7 @@ make_choices_with_infos <- function(data) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//custom_SelectInput.R #### Current file: /Users/au301842/FreesearchR/R//custom_SelectInput.R
######## ########
#' A selectizeInput customized for data frames with column labels #' A selectizeInput customized for data frames with column labels
@ -976,7 +976,7 @@ vectorSelectInput <- function(inputId,
######## ########
#### Current file: /Users/au301842/FreesearchR/R//cut-variable-dates.R #### Current file: /Users/au301842/FreesearchR/R//cut-variable-dates.R
######## ########
#' Extended cutting function with fall-back to the native base::cut #' Extended cutting function with fall-back to the native base::cut
@ -1595,7 +1595,7 @@ plot_histogram <- function(data, column=NULL, bins = 30, breaks = NULL, color =
######## ########
#### Current file: /Users/au301842/FreesearchR/R//data_plots.R #### Current file: /Users/au301842/FreesearchR/R//data_plots.R
######## ########
# source(here::here("functions.R")) # source(here::here("functions.R"))
@ -2415,7 +2415,7 @@ clean_common_axis <- function(p, axis) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//data-import.R #### Current file: /Users/au301842/FreesearchR/R//data-import.R
######## ########
data_import_ui <- function(id) { data_import_ui <- function(id) {
@ -2572,7 +2572,7 @@ data_import_demo_app <- function() {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//data-summary.R #### Current file: /Users/au301842/FreesearchR/R//data-summary.R
######## ########
#' Data summary module #' Data summary module
@ -2970,7 +2970,7 @@ get_var_icon <- function(data,class.type=c("class","type")){
######## ########
#### Current file: /Users/au301842/FreesearchR/R//datagrid-infos-mod.R #### Current file: /Users/au301842/FreesearchR/R//datagrid-infos-mod.R
######## ########
@ -3319,7 +3319,7 @@ construct_col_summary <- function(data) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//helpers.R #### Current file: /Users/au301842/FreesearchR/R//helpers.R
######## ########
#' Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' #' Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'
@ -3993,14 +3993,14 @@ simple_snake <- function(data){
######## ########
#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R #### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
######## ########
hosted_version <- function()'v25.5.5-250514' hosted_version <- function()'v25.5.5-250516'
######## ########
#### Current file: /Users/au301842/FreesearchR/R//html_dependency_freesearchr.R #### Current file: /Users/au301842/FreesearchR/R//html_dependency_freesearchr.R
######## ########
html_dependency_FreesearchR <- function() { html_dependency_FreesearchR <- function() {
@ -4015,7 +4015,7 @@ html_dependency_FreesearchR <- function() {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//import-file-ext.R #### Current file: /Users/au301842/FreesearchR/R//import-file-ext.R
######## ########
#' @title Import data from a file #' @title Import data from a file
@ -4103,7 +4103,7 @@ import_file_ui <- function(id,
inputId = ns("file"), inputId = ns("file"),
label = datamods:::i18n("Upload a file:"), label = datamods:::i18n("Upload a file:"),
buttonLabel = datamods:::i18n("Browse..."), buttonLabel = datamods:::i18n("Browse..."),
placeholder = datamods:::i18n("No file selected"), placeholder = datamods:::i18n("No file selected; maximum file size is 5 mb"),
accept = file_extensions, accept = file_extensions,
width = "100%", width = "100%",
## A solution to allow multiple file upload is being considered ## A solution to allow multiple file upload is being considered
@ -4625,7 +4625,7 @@ import_file_demo_app <- function() {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//launch_FreesearchR.R #### Current file: /Users/au301842/FreesearchR/R//launch_FreesearchR.R
######## ########
#' Easily launch the FreesearchR app #' Easily launch the FreesearchR app
@ -4656,7 +4656,7 @@ launch_FreesearchR <- function(...){
######## ########
#### Current file: /Users/au301842/FreesearchR/R//plot_box.R #### Current file: /Users/au301842/FreesearchR/R//plot_box.R
######## ########
#' Beautiful box plot(s) #' Beautiful box plot(s)
@ -4742,7 +4742,7 @@ plot_box_single <- function(data, pri, sec=NULL, seed = 2103) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//plot_euler.R #### Current file: /Users/au301842/FreesearchR/R//plot_euler.R
######## ########
#' Area proportional venn diagrams #' Area proportional venn diagrams
@ -4883,7 +4883,7 @@ plot_euler_single <- function(data) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//plot_hbar.R #### Current file: /Users/au301842/FreesearchR/R//plot_hbar.R
######## ########
#' Nice horizontal stacked bars (Grotta bars) #' Nice horizontal stacked bars (Grotta bars)
@ -4983,7 +4983,7 @@ vertical_stacked_bars <- function(data,
######## ########
#### Current file: /Users/au301842/FreesearchR/R//plot_ridge.R #### Current file: /Users/au301842/FreesearchR/R//plot_ridge.R
######## ########
#' Plot nice ridge plot #' Plot nice ridge plot
@ -5017,7 +5017,7 @@ plot_ridge <- function(data, x, y, z = NULL, ...) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//plot_sankey.R #### Current file: /Users/au301842/FreesearchR/R//plot_sankey.R
######## ########
#' Readying data for sankey plot #' Readying data for sankey plot
@ -5250,7 +5250,7 @@ plot_sankey_single <- function(data, pri, sec, color.group = c("pri", "sec"), co
######## ########
#### Current file: /Users/au301842/FreesearchR/R//plot_scatter.R #### Current file: /Users/au301842/FreesearchR/R//plot_scatter.R
######## ########
#' Beautiful violin plot #' Beautiful violin plot
@ -5285,7 +5285,7 @@ plot_scatter <- function(data, pri, sec, ter = NULL) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//plot_violin.R #### Current file: /Users/au301842/FreesearchR/R//plot_violin.R
######## ########
#' Beatiful violin plot #' Beatiful violin plot
@ -5320,7 +5320,7 @@ plot_violin <- function(data, pri, sec, ter = NULL) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//plot-download-module.R #### Current file: /Users/au301842/FreesearchR/R//plot-download-module.R
######## ########
plot_download_ui <- regression_ui <- function(id, ...) { plot_download_ui <- regression_ui <- function(id, ...) {
@ -5401,7 +5401,7 @@ plot_download_server <- function(id,
######## ########
#### Current file: /Users/au301842/FreesearchR/R//redcap_read_shiny_module.R #### Current file: /Users/au301842/FreesearchR/R//redcap_read_shiny_module.R
######## ########
#' Shiny module to browser and export REDCap data #' Shiny module to browser and export REDCap data
@ -6096,7 +6096,7 @@ redcap_demo_app <- function() {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//regression_model.R #### Current file: /Users/au301842/FreesearchR/R//regression_model.R
######## ########
#' Create a regression model programatically #' Create a regression model programatically
@ -6823,7 +6823,7 @@ regression_model_uv_list <- function(data,
######## ########
#### Current file: /Users/au301842/FreesearchR/R//regression_plot.R #### Current file: /Users/au301842/FreesearchR/R//regression_plot.R
######## ########
#' Regression coef plot from gtsummary. Slightly modified to pass on arguments #' Regression coef plot from gtsummary. Slightly modified to pass on arguments
@ -6989,7 +6989,7 @@ symmetrical_scale_x_log10 <- function(plot, breaks = c(1, 2, 3, 5, 10), ...) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//regression_table.R #### Current file: /Users/au301842/FreesearchR/R//regression_table.R
######## ########
#' Create table of regression model #' Create table of regression model
@ -7178,7 +7178,7 @@ tbl_merge <- function(data) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//regression-module.R #### Current file: /Users/au301842/FreesearchR/R//regression-module.R
######## ########
### On rewriting this module ### On rewriting this module
@ -7848,7 +7848,7 @@ regression_server <- function(id,
######## ########
#### Current file: /Users/au301842/FreesearchR/R//report.R #### Current file: /Users/au301842/FreesearchR/R//report.R
######## ########
#' Split vector by an index and embed addition #' Split vector by an index and embed addition
@ -7936,7 +7936,7 @@ modify_qmd <- function(file, format) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//syntax_highlight.R #### Current file: /Users/au301842/FreesearchR/R//syntax_highlight.R
######## ########
## Inpiration: ## Inpiration:
@ -7967,7 +7967,7 @@ html_code_wrap <- function(string,lang="r"){
######## ########
#### Current file: /Users/au301842/FreesearchR/R//theme.R #### Current file: /Users/au301842/FreesearchR/R//theme.R
######## ########
#' Custom theme based on unity #' Custom theme based on unity
@ -8075,7 +8075,7 @@ gg_theme_export <- function() {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//update-factor-ext.R #### Current file: /Users/au301842/FreesearchR/R//update-factor-ext.R
######## ########
@ -8125,8 +8125,8 @@ update_factor_ui <- function(id) {
actionButton( actionButton(
inputId = ns("sort_levels"), inputId = ns("sort_levels"),
label = tagList( label = tagList(
ph("sort-ascending"), phosphoricons::ph("sort-ascending"),
i18n("Sort by levels") datamods:::i18n("Sort by levels")
), ),
class = "btn-outline-primary mb-3", class = "btn-outline-primary mb-3",
width = "100%" width = "100%"
@ -8138,8 +8138,8 @@ update_factor_ui <- function(id) {
actionButton( actionButton(
inputId = ns("sort_occurrences"), inputId = ns("sort_occurrences"),
label = tagList( label = tagList(
ph("sort-ascending"), phosphoricons::ph("sort-ascending"),
i18n("Sort by count") datamods:::i18n("Sort by count")
), ),
class = "btn-outline-primary mb-3", class = "btn-outline-primary mb-3",
width = "100%" width = "100%"
@ -8151,7 +8151,7 @@ update_factor_ui <- function(id) {
class = "float-end", class = "float-end",
shinyWidgets::prettyCheckbox( shinyWidgets::prettyCheckbox(
inputId = ns("new_var"), inputId = ns("new_var"),
label = i18n("Create a new variable (otherwise replaces the one selected)"), label = datamods:::i18n("Create a new variable (otherwise replaces the one selected)"),
value = FALSE, value = FALSE,
status = "primary", status = "primary",
outline = TRUE, outline = TRUE,
@ -8159,7 +8159,7 @@ update_factor_ui <- function(id) {
), ),
actionButton( actionButton(
inputId = ns("create"), inputId = ns("create"),
label = tagList(ph("arrow-clockwise"), i18n("Update factor variable")), label = tagList(phosphoricons::ph("arrow-clockwise"), datamods:::i18n("Update factor variable")),
class = "btn-outline-primary" class = "btn-outline-primary"
) )
), ),
@ -8207,13 +8207,13 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
if (input$sort_levels %% 2 == 1) { if (input$sort_levels %% 2 == 1) {
decreasing <- FALSE decreasing <- FALSE
label <- tagList( label <- tagList(
ph("sort-descending"), phosphoricons::ph("sort-descending"),
"Sort Levels" "Sort Levels"
) )
} else { } else {
decreasing <- TRUE decreasing <- TRUE
label <- tagList( label <- tagList(
ph("sort-ascending"), phosphoricons::ph("sort-ascending"),
"Sort Levels" "Sort Levels"
) )
} }
@ -8225,14 +8225,14 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
if (input$sort_occurrences %% 2 == 1) { if (input$sort_occurrences %% 2 == 1) {
decreasing <- FALSE decreasing <- FALSE
label <- tagList( label <- tagList(
ph("sort-descending"), phosphoricons::ph("sort-descending"),
i18n("Sort count") datamods:::i18n("Sort count")
) )
} else { } else {
decreasing <- TRUE decreasing <- TRUE
label <- tagList( label <- tagList(
ph("sort-ascending"), phosphoricons::ph("sort-ascending"),
i18n("Sort count") datamods:::i18n("Sort count")
) )
} }
updateActionButton(inputId = "sort_occurrences", label = as.character(label)) updateActionButton(inputId = "sort_occurrences", label = as.character(label))
@ -8259,7 +8259,7 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
grid <- grid_columns( grid <- grid_columns(
grid, grid,
columns = c("Var1", "Var1_toset", "Freq"), columns = c("Var1", "Var1_toset", "Freq"),
header = c(i18n("Levels"), "New label", i18n("Count")) header = c(datamods:::i18n("Levels"), "New label", datamods:::i18n("Count"))
) )
grid <- grid_colorbar( grid <- grid_colorbar(
grid, grid,
@ -8372,7 +8372,7 @@ winbox_update_factor <- function(id,
######## ########
#### Current file: /Users/au301842/FreesearchR/R//update-variables-ext.R #### Current file: /Users/au301842/FreesearchR/R//update-variables-ext.R
######## ########
#' Select, rename and convert variables #' Select, rename and convert variables
@ -9184,7 +9184,7 @@ clean_date <- function(data) {
######## ########
#### Current file: /Users/au301842/FreesearchR/R//wide2long.R #### Current file: /Users/au301842/FreesearchR/R//wide2long.R
######## ########
#' Alternative pivoting method for easily pivoting based on name pattern #' Alternative pivoting method for easily pivoting based on name pattern
@ -9343,7 +9343,7 @@ grepl_fix <- function(data, pattern, type = c("prefix", "infix", "suffix")) {
######## ########
#### Current file: /Users/au301842/FreesearchR/dev/header_include.R #### Current file: /Users/au301842/FreesearchR/dev/header_include.R
######## ########
header_include <- function(){ header_include <- function(){
@ -9353,7 +9353,16 @@ header_include <- function(){
######## ########
#### Current file: /Users/au301842/FreesearchR/app/ui.R #### Current file: /Users/au301842/FreesearchR/dev/dev_banner.R
########
dev_banner <- function(){
NULL
}
########
#### Current file: /Users/au301842/FreesearchR/app/ui.R
######## ########
# ns <- NS(id) # ns <- NS(id)
@ -9369,6 +9378,10 @@ ui_elements <- list(
"home" = bslib::nav_panel( "home" = bslib::nav_panel(
title = "FreesearchR", title = "FreesearchR",
shiny::fluidRow( shiny::fluidRow(
## On building the dev-version for shinyapps.io, the dev_banner() is redefined
## Default just output "NULL"
## This could probably be achieved more legantly, but this works.
dev_banner(),
shiny::column(width = 2), shiny::column(width = 2),
shiny::column( shiny::column(
width = 8, width = 8,
@ -9935,7 +9948,7 @@ ui <- bslib::page_fixed(
######## ########
#### Current file: /Users/au301842/FreesearchR/app/server.R #### Current file: /Users/au301842/FreesearchR/app/server.R
######## ########
@ -10686,7 +10699,7 @@ server <- function(input, output, session) {
######## ########
#### Current file: /Users/au301842/FreesearchR/app/launch.R #### Current file: /Users/au301842/FreesearchR/app/launch.R
######## ########
shinyApp(ui, server) shinyApp(ui, server)