catching missed functions

This commit is contained in:
Andreas Gammelgaard Damsbo 2025-05-16 16:08:52 +02:00
parent a05c993c8c
commit 3e5f998263
No known key found for this signature in database
2 changed files with 85 additions and 72 deletions

View file

@ -45,8 +45,8 @@ update_factor_ui <- function(id) {
actionButton(
inputId = ns("sort_levels"),
label = tagList(
ph("sort-ascending"),
i18n("Sort by levels")
phosphoricons::ph("sort-ascending"),
datamods:::i18n("Sort by levels")
),
class = "btn-outline-primary mb-3",
width = "100%"
@ -58,8 +58,8 @@ update_factor_ui <- function(id) {
actionButton(
inputId = ns("sort_occurrences"),
label = tagList(
ph("sort-ascending"),
i18n("Sort by count")
phosphoricons::ph("sort-ascending"),
datamods:::i18n("Sort by count")
),
class = "btn-outline-primary mb-3",
width = "100%"
@ -71,7 +71,7 @@ update_factor_ui <- function(id) {
class = "float-end",
shinyWidgets::prettyCheckbox(
inputId = ns("new_var"),
label = i18n("Create a new variable (otherwise replaces the one selected)"),
label = datamods:::i18n("Create a new variable (otherwise replaces the one selected)"),
value = FALSE,
status = "primary",
outline = TRUE,
@ -79,7 +79,7 @@ update_factor_ui <- function(id) {
),
actionButton(
inputId = ns("create"),
label = tagList(ph("arrow-clockwise"), i18n("Update factor variable")),
label = tagList(phosphoricons::ph("arrow-clockwise"), datamods:::i18n("Update factor variable")),
class = "btn-outline-primary"
)
),
@ -127,13 +127,13 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
if (input$sort_levels %% 2 == 1) {
decreasing <- FALSE
label <- tagList(
ph("sort-descending"),
phosphoricons::ph("sort-descending"),
"Sort Levels"
)
} else {
decreasing <- TRUE
label <- tagList(
ph("sort-ascending"),
phosphoricons::ph("sort-ascending"),
"Sort Levels"
)
}
@ -145,14 +145,14 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
if (input$sort_occurrences %% 2 == 1) {
decreasing <- FALSE
label <- tagList(
ph("sort-descending"),
i18n("Sort count")
phosphoricons::ph("sort-descending"),
datamods:::i18n("Sort count")
)
} else {
decreasing <- TRUE
label <- tagList(
ph("sort-ascending"),
i18n("Sort count")
phosphoricons::ph("sort-ascending"),
datamods:::i18n("Sort count")
)
}
updateActionButton(inputId = "sort_occurrences", label = as.character(label))
@ -179,7 +179,7 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
grid <- grid_columns(
grid,
columns = c("Var1", "Var1_toset", "Freq"),
header = c(i18n("Levels"), "New label", i18n("Count"))
header = c(datamods:::i18n("Levels"), "New label", datamods:::i18n("Count"))
)
grid <- grid_colorbar(
grid,

View file

@ -1,7 +1,7 @@
########
#### Current file: /Users/au301842/FreesearchR/app/libs.R
#### Current file: /Users/au301842/FreesearchR/app/libs.R
########
library(shiny)
@ -40,20 +40,20 @@ library(rlang)
########
#### Current file: /Users/au301842/FreesearchR/app/functions.R
#### Current file: /Users/au301842/FreesearchR/app/functions.R
########
########
#### Current file: /Users/au301842/FreesearchR/R//app_version.R
#### Current file: /Users/au301842/FreesearchR/R//app_version.R
########
app_version <- function()'25.5.5'
########
#### Current file: /Users/au301842/FreesearchR/R//baseline_table.R
#### Current file: /Users/au301842/FreesearchR/R//baseline_table.R
########
#' Print a flexible baseline characteristics table
@ -138,7 +138,7 @@ create_baseline <- function(data, ..., by.var, add.p = FALSE, add.overall = FALS
########
#### Current file: /Users/au301842/FreesearchR/R//contrast_text.R
#### Current file: /Users/au301842/FreesearchR/R//contrast_text.R
########
#' @title Contrast Text Color
@ -194,7 +194,7 @@ contrast_text <- function(background,
########
#### Current file: /Users/au301842/FreesearchR/R//correlations-module.R
#### Current file: /Users/au301842/FreesearchR/R//correlations-module.R
########
#' Data correlations evaluation module
@ -339,7 +339,7 @@ sentence_paste <- function(data, and.str = "and") {
########
#### Current file: /Users/au301842/FreesearchR/R//create-column-mod.R
#### Current file: /Users/au301842/FreesearchR/R//create-column-mod.R
########
#' @title Create new column
@ -531,7 +531,7 @@ create_column_server <- function(id,
if (input$new_column == "") {
rv$feedback <- shinyWidgets::alert(
status = "warning",
ph("warning"), datamods::i18n("New column name cannot be empty")
phosphoricons::ph("warning"), datamods::i18n("New column name cannot be empty")
)
}
})
@ -695,7 +695,7 @@ try_compute_column <- function(expression,
)
shinyWidgets::alert(
status = "success",
ph("check"), datamods::i18n("Column added!")
phosphoricons::ph("check"), datamods::i18n("Column added!")
)
}
@ -718,7 +718,7 @@ extract_calls <- function(exp) {
alert_error <- function(text) {
alert(
status = "danger",
ph("bug"), text
phosphoricons::ph("bug"), text
)
}
@ -782,7 +782,7 @@ make_choices_with_infos <- function(data) {
########
#### Current file: /Users/au301842/FreesearchR/R//custom_SelectInput.R
#### Current file: /Users/au301842/FreesearchR/R//custom_SelectInput.R
########
#' A selectizeInput customized for data frames with column labels
@ -976,7 +976,7 @@ vectorSelectInput <- function(inputId,
########
#### Current file: /Users/au301842/FreesearchR/R//cut-variable-dates.R
#### Current file: /Users/au301842/FreesearchR/R//cut-variable-dates.R
########
#' Extended cutting function with fall-back to the native base::cut
@ -1595,7 +1595,7 @@ plot_histogram <- function(data, column=NULL, bins = 30, breaks = NULL, color =
########
#### Current file: /Users/au301842/FreesearchR/R//data_plots.R
#### Current file: /Users/au301842/FreesearchR/R//data_plots.R
########
# source(here::here("functions.R"))
@ -2415,7 +2415,7 @@ clean_common_axis <- function(p, axis) {
########
#### Current file: /Users/au301842/FreesearchR/R//data-import.R
#### Current file: /Users/au301842/FreesearchR/R//data-import.R
########
data_import_ui <- function(id) {
@ -2572,7 +2572,7 @@ data_import_demo_app <- function() {
########
#### Current file: /Users/au301842/FreesearchR/R//data-summary.R
#### Current file: /Users/au301842/FreesearchR/R//data-summary.R
########
#' Data summary module
@ -2970,7 +2970,7 @@ get_var_icon <- function(data,class.type=c("class","type")){
########
#### Current file: /Users/au301842/FreesearchR/R//datagrid-infos-mod.R
#### Current file: /Users/au301842/FreesearchR/R//datagrid-infos-mod.R
########
@ -3319,7 +3319,7 @@ construct_col_summary <- function(data) {
########
#### Current file: /Users/au301842/FreesearchR/R//helpers.R
#### Current file: /Users/au301842/FreesearchR/R//helpers.R
########
#' Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'
@ -3993,14 +3993,14 @@ simple_snake <- function(data){
########
#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
########
hosted_version <- function()'v25.5.5-250514'
hosted_version <- function()'v25.5.5-250516'
########
#### Current file: /Users/au301842/FreesearchR/R//html_dependency_freesearchr.R
#### Current file: /Users/au301842/FreesearchR/R//html_dependency_freesearchr.R
########
html_dependency_FreesearchR <- function() {
@ -4015,7 +4015,7 @@ html_dependency_FreesearchR <- function() {
########
#### Current file: /Users/au301842/FreesearchR/R//import-file-ext.R
#### Current file: /Users/au301842/FreesearchR/R//import-file-ext.R
########
#' @title Import data from a file
@ -4103,7 +4103,7 @@ import_file_ui <- function(id,
inputId = ns("file"),
label = datamods:::i18n("Upload a file:"),
buttonLabel = datamods:::i18n("Browse..."),
placeholder = datamods:::i18n("No file selected"),
placeholder = datamods:::i18n("No file selected; maximum file size is 5 mb"),
accept = file_extensions,
width = "100%",
## A solution to allow multiple file upload is being considered
@ -4625,7 +4625,7 @@ import_file_demo_app <- function() {
########
#### Current file: /Users/au301842/FreesearchR/R//launch_FreesearchR.R
#### Current file: /Users/au301842/FreesearchR/R//launch_FreesearchR.R
########
#' Easily launch the FreesearchR app
@ -4656,7 +4656,7 @@ launch_FreesearchR <- function(...){
########
#### Current file: /Users/au301842/FreesearchR/R//plot_box.R
#### Current file: /Users/au301842/FreesearchR/R//plot_box.R
########
#' Beautiful box plot(s)
@ -4742,7 +4742,7 @@ plot_box_single <- function(data, pri, sec=NULL, seed = 2103) {
########
#### Current file: /Users/au301842/FreesearchR/R//plot_euler.R
#### Current file: /Users/au301842/FreesearchR/R//plot_euler.R
########
#' Area proportional venn diagrams
@ -4883,7 +4883,7 @@ plot_euler_single <- function(data) {
########
#### Current file: /Users/au301842/FreesearchR/R//plot_hbar.R
#### Current file: /Users/au301842/FreesearchR/R//plot_hbar.R
########
#' Nice horizontal stacked bars (Grotta bars)
@ -4983,7 +4983,7 @@ vertical_stacked_bars <- function(data,
########
#### Current file: /Users/au301842/FreesearchR/R//plot_ridge.R
#### Current file: /Users/au301842/FreesearchR/R//plot_ridge.R
########
#' Plot nice ridge plot
@ -5017,7 +5017,7 @@ plot_ridge <- function(data, x, y, z = NULL, ...) {
########
#### Current file: /Users/au301842/FreesearchR/R//plot_sankey.R
#### Current file: /Users/au301842/FreesearchR/R//plot_sankey.R
########
#' Readying data for sankey plot
@ -5250,7 +5250,7 @@ plot_sankey_single <- function(data, pri, sec, color.group = c("pri", "sec"), co
########
#### Current file: /Users/au301842/FreesearchR/R//plot_scatter.R
#### Current file: /Users/au301842/FreesearchR/R//plot_scatter.R
########
#' Beautiful violin plot
@ -5285,7 +5285,7 @@ plot_scatter <- function(data, pri, sec, ter = NULL) {
########
#### Current file: /Users/au301842/FreesearchR/R//plot_violin.R
#### Current file: /Users/au301842/FreesearchR/R//plot_violin.R
########
#' Beatiful violin plot
@ -5320,7 +5320,7 @@ plot_violin <- function(data, pri, sec, ter = NULL) {
########
#### Current file: /Users/au301842/FreesearchR/R//plot-download-module.R
#### Current file: /Users/au301842/FreesearchR/R//plot-download-module.R
########
plot_download_ui <- regression_ui <- function(id, ...) {
@ -5401,7 +5401,7 @@ plot_download_server <- function(id,
########
#### Current file: /Users/au301842/FreesearchR/R//redcap_read_shiny_module.R
#### Current file: /Users/au301842/FreesearchR/R//redcap_read_shiny_module.R
########
#' Shiny module to browser and export REDCap data
@ -6096,7 +6096,7 @@ redcap_demo_app <- function() {
########
#### Current file: /Users/au301842/FreesearchR/R//regression_model.R
#### Current file: /Users/au301842/FreesearchR/R//regression_model.R
########
#' Create a regression model programatically
@ -6823,7 +6823,7 @@ regression_model_uv_list <- function(data,
########
#### Current file: /Users/au301842/FreesearchR/R//regression_plot.R
#### Current file: /Users/au301842/FreesearchR/R//regression_plot.R
########
#' Regression coef plot from gtsummary. Slightly modified to pass on arguments
@ -6989,7 +6989,7 @@ symmetrical_scale_x_log10 <- function(plot, breaks = c(1, 2, 3, 5, 10), ...) {
########
#### Current file: /Users/au301842/FreesearchR/R//regression_table.R
#### Current file: /Users/au301842/FreesearchR/R//regression_table.R
########
#' Create table of regression model
@ -7178,7 +7178,7 @@ tbl_merge <- function(data) {
########
#### Current file: /Users/au301842/FreesearchR/R//regression-module.R
#### Current file: /Users/au301842/FreesearchR/R//regression-module.R
########
### On rewriting this module
@ -7848,7 +7848,7 @@ regression_server <- function(id,
########
#### Current file: /Users/au301842/FreesearchR/R//report.R
#### Current file: /Users/au301842/FreesearchR/R//report.R
########
#' Split vector by an index and embed addition
@ -7936,7 +7936,7 @@ modify_qmd <- function(file, format) {
########
#### Current file: /Users/au301842/FreesearchR/R//syntax_highlight.R
#### Current file: /Users/au301842/FreesearchR/R//syntax_highlight.R
########
## Inpiration:
@ -7967,7 +7967,7 @@ html_code_wrap <- function(string,lang="r"){
########
#### Current file: /Users/au301842/FreesearchR/R//theme.R
#### Current file: /Users/au301842/FreesearchR/R//theme.R
########
#' Custom theme based on unity
@ -8075,7 +8075,7 @@ gg_theme_export <- function() {
########
#### Current file: /Users/au301842/FreesearchR/R//update-factor-ext.R
#### Current file: /Users/au301842/FreesearchR/R//update-factor-ext.R
########
@ -8125,8 +8125,8 @@ update_factor_ui <- function(id) {
actionButton(
inputId = ns("sort_levels"),
label = tagList(
ph("sort-ascending"),
i18n("Sort by levels")
phosphoricons::ph("sort-ascending"),
datamods:::i18n("Sort by levels")
),
class = "btn-outline-primary mb-3",
width = "100%"
@ -8138,8 +8138,8 @@ update_factor_ui <- function(id) {
actionButton(
inputId = ns("sort_occurrences"),
label = tagList(
ph("sort-ascending"),
i18n("Sort by count")
phosphoricons::ph("sort-ascending"),
datamods:::i18n("Sort by count")
),
class = "btn-outline-primary mb-3",
width = "100%"
@ -8151,7 +8151,7 @@ update_factor_ui <- function(id) {
class = "float-end",
shinyWidgets::prettyCheckbox(
inputId = ns("new_var"),
label = i18n("Create a new variable (otherwise replaces the one selected)"),
label = datamods:::i18n("Create a new variable (otherwise replaces the one selected)"),
value = FALSE,
status = "primary",
outline = TRUE,
@ -8159,7 +8159,7 @@ update_factor_ui <- function(id) {
),
actionButton(
inputId = ns("create"),
label = tagList(ph("arrow-clockwise"), i18n("Update factor variable")),
label = tagList(phosphoricons::ph("arrow-clockwise"), datamods:::i18n("Update factor variable")),
class = "btn-outline-primary"
)
),
@ -8207,13 +8207,13 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
if (input$sort_levels %% 2 == 1) {
decreasing <- FALSE
label <- tagList(
ph("sort-descending"),
phosphoricons::ph("sort-descending"),
"Sort Levels"
)
} else {
decreasing <- TRUE
label <- tagList(
ph("sort-ascending"),
phosphoricons::ph("sort-ascending"),
"Sort Levels"
)
}
@ -8225,14 +8225,14 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
if (input$sort_occurrences %% 2 == 1) {
decreasing <- FALSE
label <- tagList(
ph("sort-descending"),
i18n("Sort count")
phosphoricons::ph("sort-descending"),
datamods:::i18n("Sort count")
)
} else {
decreasing <- TRUE
label <- tagList(
ph("sort-ascending"),
i18n("Sort count")
phosphoricons::ph("sort-ascending"),
datamods:::i18n("Sort count")
)
}
updateActionButton(inputId = "sort_occurrences", label = as.character(label))
@ -8259,7 +8259,7 @@ update_factor_server <- function(id, data_r = reactive(NULL)) {
grid <- grid_columns(
grid,
columns = c("Var1", "Var1_toset", "Freq"),
header = c(i18n("Levels"), "New label", i18n("Count"))
header = c(datamods:::i18n("Levels"), "New label", datamods:::i18n("Count"))
)
grid <- grid_colorbar(
grid,
@ -8372,7 +8372,7 @@ winbox_update_factor <- function(id,
########
#### Current file: /Users/au301842/FreesearchR/R//update-variables-ext.R
#### Current file: /Users/au301842/FreesearchR/R//update-variables-ext.R
########
#' Select, rename and convert variables
@ -9184,7 +9184,7 @@ clean_date <- function(data) {
########
#### Current file: /Users/au301842/FreesearchR/R//wide2long.R
#### Current file: /Users/au301842/FreesearchR/R//wide2long.R
########
#' Alternative pivoting method for easily pivoting based on name pattern
@ -9343,7 +9343,7 @@ grepl_fix <- function(data, pattern, type = c("prefix", "infix", "suffix")) {
########
#### Current file: /Users/au301842/FreesearchR/dev/header_include.R
#### Current file: /Users/au301842/FreesearchR/dev/header_include.R
########
header_include <- function(){
@ -9353,7 +9353,16 @@ header_include <- function(){
########
#### Current file: /Users/au301842/FreesearchR/app/ui.R
#### Current file: /Users/au301842/FreesearchR/dev/dev_banner.R
########
dev_banner <- function(){
NULL
}
########
#### Current file: /Users/au301842/FreesearchR/app/ui.R
########
# ns <- NS(id)
@ -9369,6 +9378,10 @@ ui_elements <- list(
"home" = bslib::nav_panel(
title = "FreesearchR",
shiny::fluidRow(
## On building the dev-version for shinyapps.io, the dev_banner() is redefined
## Default just output "NULL"
## This could probably be achieved more legantly, but this works.
dev_banner(),
shiny::column(width = 2),
shiny::column(
width = 8,
@ -9935,7 +9948,7 @@ ui <- bslib::page_fixed(
########
#### Current file: /Users/au301842/FreesearchR/app/server.R
#### Current file: /Users/au301842/FreesearchR/app/server.R
########
@ -10686,7 +10699,7 @@ server <- function(input, output, session) {
########
#### Current file: /Users/au301842/FreesearchR/app/launch.R
#### Current file: /Users/au301842/FreesearchR/app/launch.R
########
shinyApp(ui, server)