Examples
supported_plots() |> str()
-#> List of 4
-#> $ plot_hbars :List of 6
+#> List of 5
+#> $ plot_hbars :List of 8
+#> ..$ fun : chr "plot_hbars"
#> ..$ descr : chr "Stacked horizontal bars"
#> ..$ note : chr "A classical way of visualising the distribution of an ordinal scale like the modified Ranking Scale and known as Grotta bars"
#> ..$ primary.type : chr [1:2] "dichotomous" "ordinal"
#> ..$ secondary.type : chr [1:2] "dichotomous" "ordinal"
+#> ..$ secondary.multi: logi FALSE
#> ..$ tertiary.type : chr [1:2] "dichotomous" "ordinal"
#> ..$ secondary.extra: chr "none"
-#> $ plot_violin :List of 6
+#> $ plot_violin :List of 8
+#> ..$ fun : chr "plot_violin"
#> ..$ descr : chr "Violin plot"
#> ..$ note : chr "A modern alternative to the classic boxplot to visualise data distribution"
#> ..$ primary.type : chr [1:3] "continuous" "dichotomous" "ordinal"
#> ..$ secondary.type : chr [1:2] "dichotomous" "ordinal"
-#> ..$ tertiary.type : chr [1:2] "dichotomous" "ordinal"
+#> ..$ secondary.multi: logi FALSE
#> ..$ secondary.extra: chr "none"
-#> $ plot_sankey :List of 6
+#> ..$ tertiary.type : chr [1:2] "dichotomous" "ordinal"
+#> $ plot_sankey :List of 8
+#> ..$ fun : chr "plot_sankey"
#> ..$ descr : chr "Sankey plot"
#> ..$ note : chr "A way of visualising change between groups"
#> ..$ primary.type : chr [1:2] "dichotomous" "ordinal"
#> ..$ secondary.type : chr [1:2] "dichotomous" "ordinal"
-#> ..$ tertiary.type : chr [1:2] "dichotomous" "ordinal"
+#> ..$ secondary.multi: logi FALSE
#> ..$ secondary.extra: NULL
-#> $ plot_scatter:List of 6
+#> ..$ tertiary.type : chr [1:2] "dichotomous" "ordinal"
+#> $ plot_scatter:List of 8
+#> ..$ fun : chr "plot_scatter"
#> ..$ descr : chr "Scatter plot"
#> ..$ note : chr "A classic way of showing the association between to variables"
#> ..$ primary.type : chr "continuous"
#> ..$ secondary.type : chr [1:2] "continuous" "ordinal"
+#> ..$ secondary.multi: logi FALSE
+#> ..$ tertiary.type : chr [1:2] "dichotomous" "ordinal"
+#> ..$ secondary.extra: NULL
+#> $ plot_euler :List of 9
+#> ..$ fun : chr "plot_euler"
+#> ..$ descr : chr "Euler diagram"
+#> ..$ note : chr "Generate area-proportional Euler diagrams to display set relationships"
+#> ..$ primary.type : chr "dichotomous"
+#> ..$ secondary.type : chr "dichotomous"
+#> ..$ secondary.multi: logi TRUE
+#> ..$ secondary.max : num 4
#> ..$ tertiary.type : chr [1:2] "dichotomous" "ordinal"
#> ..$ secondary.extra: NULL
diff --git a/reference/wide2long.html b/reference/wide2long.html
index 198f581..ab50068 100644
--- a/reference/wide2long.html
+++ b/reference/wide2long.html
@@ -97,46 +97,46 @@ Default is "1", first column.
setNames(c("id", "age", "weight_0", "weight_1", "height_1")) |>
wide2long(pattern = c("_0", "_1"), type = "suffix")
#> id age instance weight height
-
#> 1 1 73 0 93 NA
-
#> 2 1 NA 1 80 189
-
#> 3 2 76 0 71 NA
-
#> 4 2 NA 1 78 185
-
#> 5 3 73 0 71 NA
-
#> 6 3 NA 1 89 196
-
#> 7 4 76 0 81 NA
-
#> 8 4 NA 1 73 184
-
#> 9 5 70 0 98 NA
-
#> 10 5 NA 1 85 183
-
#> 11 6 70 0 90 NA
-
#> 12 6 NA 1 99 183
-
#> 13 7 77 0 74 NA
-
#> 14 7 NA 1 77 186
-
#> 15 8 80 0 81 NA
-
#> 16 8 NA 1 72 200
-
#> 17 9 72 0 95 NA
-
#> 18 9 NA 1 90 173
-
#> 19 10 79 0 72 NA
-
#> 20 10 NA 1 92 184
-
#> 21 11 78 0 90 NA
-
#> 22 11 NA 1 90 194
-
#> 23 12 72 0 83 NA
-
#> 24 12 NA 1 79 194
-
#> 25 13 76 0 80 NA
-
#> 26 13 NA 1 75 172
-
#> 27 14 76 0 100 NA
-
#> 28 14 NA 1 76 173
-
#> 29 15 74 0 83 NA
-
#> 30 15 NA 1 96 181
-
#> 31 16 75 0 80 NA
-
#> 32 16 NA 1 79 199
-
#> 33 17 77 0 71 NA
-
#> 34 17 NA 1 95 178
-
#> 35 18 76 0 89 NA
-
#> 36 18 NA 1 99 175
-
#> 37 19 75 0 78 NA
-
#> 38 19 NA 1 88 175
-
#> 39 20 79 0 83 NA
-
#> 40 20 NA 1 98 178
+
#> 1 1 71 0 95 NA
+
#> 2 1 NA 1 98 179
+
#> 3 2 72 0 77 NA
+
#> 4 2 NA 1 98 182
+
#> 5 3 70 0 85 NA
+
#> 6 3 NA 1 74 197
+
#> 7 4 71 0 83 NA
+
#> 8 4 NA 1 82 199
+
#> 9 5 72 0 90 NA
+
#> 10 5 NA 1 88 179
+
#> 11 6 75 0 94 NA
+
#> 12 6 NA 1 94 175
+
#> 13 7 74 0 75 NA
+
#> 14 7 NA 1 100 179
+
#> 15 8 71 0 91 NA
+
#> 16 8 NA 1 83 195
+
#> 17 9 78 0 77 NA
+
#> 18 9 NA 1 96 176
+
#> 19 10 79 0 90 NA
+
#> 20 10 NA 1 92 187
+
#> 21 11 78 0 93 NA
+
#> 22 11 NA 1 96 188
+
#> 23 12 71 0 72 NA
+
#> 24 12 NA 1 73 193
+
#> 25 13 71 0 77 NA
+
#> 26 13 NA 1 89 187
+
#> 27 14 76 0 74 NA
+
#> 28 14 NA 1 100 192
+
#> 29 15 73 0 83 NA
+
#> 30 15 NA 1 96 190
+
#> 31 16 75 0 96 NA
+
#> 32 16 NA 1 82 183
+
#> 33 17 71 0 82 NA
+
#> 34 17 NA 1 72 192
+
#> 35 18 76 0 88 NA
+
#> 36 18 NA 1 77 195
+
#> 37 19 78 0 72 NA
+
#> 38 19 NA 1 93 184
+
#> 39 20 75 0 97 NA
+
#> 40 20 NA 1 98 198
data.frame(
1:20, sample(70:80, 20, TRUE),
sample(70:100, 20, TRUE),
@@ -146,46 +146,46 @@ Default is "1", first column.
setNames(c("id", "age", "weight_0", "weight_a_1", "height_b_1")) |>
wide2long(pattern = c("_0", "_1"), type = "suffix")
#> id age instance weight weight_a height_b
-
#> 1 1 78 0 74 NA NA
-
#> 2 1 NA 1 NA 87 171
-
#> 3 2 73 0 78 NA NA
-
#> 4 2 NA 1 NA 99 186
-
#> 5 3 77 0 71 NA NA
-
#> 6 3 NA 1 NA 92 196
-
#> 7 4 75 0 80 NA NA
-
#> 8 4 NA 1 NA 71 174
-
#> 9 5 80 0 71 NA NA
-
#> 10 5 NA 1 NA 88 173
-
#> 11 6 77 0 74 NA NA
-
#> 12 6 NA 1 NA 79 195
-
#> 13 7 72 0 90 NA NA
-
#> 14 7 NA 1 NA 86 200
-
#> 15 8 76 0 93 NA NA
-
#> 16 8 NA 1 NA 99 175
-
#> 17 9 79 0 99 NA NA
-
#> 18 9 NA 1 NA 95 192
-
#> 19 10 79 0 81 NA NA
-
#> 20 10 NA 1 NA 97 179
-
#> 21 11 76 0 81 NA NA
-
#> 22 11 NA 1 NA 74 175
-
#> 23 12 75 0 90 NA NA
-
#> 24 12 NA 1 NA 93 186
-
#> 25 13 77 0 94 NA NA
-
#> 26 13 NA 1 NA 71 179
-
#> 27 14 79 0 76 NA NA
-
#> 28 14 NA 1 NA 92 200
-
#> 29 15 76 0 99 NA NA
-
#> 30 15 NA 1 NA 96 184
+
#> 1 1 79 0 75 NA NA
+
#> 2 1 NA 1 NA 71 171
+
#> 3 2 74 0 93 NA NA
+
#> 4 2 NA 1 NA 97 199
+
#> 5 3 75 0 95 NA NA
+
#> 6 3 NA 1 NA 81 192
+
#> 7 4 70 0 97 NA NA
+
#> 8 4 NA 1 NA 75 195
+
#> 9 5 70 0 77 NA NA
+
#> 10 5 NA 1 NA 83 191
+
#> 11 6 75 0 90 NA NA
+
#> 12 6 NA 1 NA 95 178
+
#> 13 7 75 0 76 NA NA
+
#> 14 7 NA 1 NA 78 200
+
#> 15 8 79 0 72 NA NA
+
#> 16 8 NA 1 NA 76 185
+
#> 17 9 75 0 79 NA NA
+
#> 18 9 NA 1 NA 88 195
+
#> 19 10 78 0 70 NA NA
+
#> 20 10 NA 1 NA 74 199
+
#> 21 11 70 0 99 NA NA
+
#> 22 11 NA 1 NA 86 176
+
#> 23 12 77 0 74 NA NA
+
#> 24 12 NA 1 NA 78 174
+
#> 25 13 75 0 74 NA NA
+
#> 26 13 NA 1 NA 91 192
+
#> 27 14 70 0 73 NA NA
+
#> 28 14 NA 1 NA 81 176
+
#> 29 15 79 0 80 NA NA
+
#> 30 15 NA 1 NA 91 176
#> 31 16 72 0 78 NA NA
-
#> 32 16 NA 1 NA 92 196
-
#> 33 17 73 0 84 NA NA
-
#> 34 17 NA 1 NA 80 180
-
#> 35 18 76 0 75 NA NA
-
#> 36 18 NA 1 NA 95 199
-
#> 37 19 77 0 84 NA NA
-
#> 38 19 NA 1 NA 79 170
-
#> 39 20 80 0 93 NA NA
-
#> 40 20 NA 1 NA 97 190
+
#> 32 16 NA 1 NA 94 181
+
#> 33 17 77 0 71 NA NA
+
#> 34 17 NA 1 NA 82 181
+
#> 35 18 80 0 97 NA NA
+
#> 36 18 NA 1 NA 81 200
+
#> 37 19 80 0 79 NA NA
+
#> 38 19 NA 1 NA 72 195
+
#> 39 20 74 0 71 NA NA
+
#> 40 20 NA 1 NA 77 171
# Optional filling of missing values by last observation carried forward
# Needed for mmrm analyses
long_missings |>
diff --git a/search.json b/search.json
index dabbb59..4a005cf 100644
--- a/search.json
+++ b/search.json
@@ -1 +1 @@
-[{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement agdamsbo@clin.au.dk. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU Affero General Public License","title":"GNU Affero General Public License","text":"Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc.
Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU Affero General Public License","text":"GNU Affero General Public License free, copyleft license software kinds works, specifically designed ensure cooperation community case network server software. licenses software practical works designed take away freedom share change works. contrast, General Public Licenses intended guarantee freedom share change versions program–make sure remains free software users. speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. Developers use General Public Licenses protect rights two steps: (1) assert copyright software, (2) offer License gives legal permission copy, distribute /modify software. secondary benefit defending users’ freedom improvements made alternate versions program, receive widespread use, become available developers incorporate. Many developers free software heartened encouraged resulting cooperation. However, case software used network servers, result may fail come . GNU General Public License permits making modified version letting public access server without ever releasing source code public. GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions.","title":"GNU Affero General Public License","text":"“License” refers version 3 GNU Affero General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. 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Source Code.","title":"GNU Affero General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. 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License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law.","title":"GNU Affero General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies.","title":"GNU Affero General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. Conveying Modified Source Versions.","title":"GNU Affero General Public License","text":"may convey work based Program, modifications produce Program, form source code terms section 4, provided also meet conditions: work must carry prominent notices stating modified , giving relevant date. work must carry prominent notices stating released License conditions added section 7. requirement modifies requirement section 4 “keep intact notices”. must license entire work, whole, License anyone comes possession copy. License therefore apply, along applicable section 7 additional terms, whole work, parts, regardless packaged. 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Conveying Non-Source Forms.","title":"GNU Affero General Public License","text":"may convey covered work object code form terms sections 4 5, provided also convey machine-readable Corresponding Source terms License, one ways: Convey object code , embodied , physical product (including physical distribution medium), accompanied Corresponding Source fixed durable physical medium customarily used software interchange. Convey object code , embodied , physical product (including physical distribution medium), accompanied written offer, valid least three years valid long offer spare parts customer support product model, give anyone possesses object code either (1) copy Corresponding Source software product covered License, durable physical medium customarily used software interchange, price reasonable cost physically performing conveying source, (2) access copy Corresponding Source network server charge. 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Access network may denied modification materially adversely affects operation network violates rules protocols communication across network. Corresponding Source conveyed, Installation Information provided, accord section must format publicly documented (implementation available public source code form), must require special password key unpacking, reading copying.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_7-additional-terms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"7. Additional Terms.","title":"GNU Affero General Public License","text":"“Additional permissions” terms supplement terms License making exceptions one conditions. Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. 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Termination.","title":"GNU Affero General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. 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Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU General Public License single combined work, convey resulting work. terms License continue apply part covered work, work combined remain governed version 3 GNU General Public License.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License.","title":"GNU Affero General Public License","text":"Free Software Foundation may publish revised /new versions GNU Affero General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":"
Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see ."},{"path":"https://agdamsbo.github.io/freesearcheR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set available, collection questions answers project use app.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, lot things still changing. , however, usable state, basic functions available user. (actual list quite long growing) planned features improvements: Stratified analyses Additional study designs: Cross-sectional data analyses Longitudinal data analyses Survival analysis detailed variable browser Add histograms data distribution. 2025-01-16 Option edit labels. 2025-01-16 output controls Theming output tables Select analyses include report Export modified data. 2025-01-16 Include reproducible code steps (maybe , steps, final dataset can exported) Modify factor levels Factor level modifications possible converting factors numeric > cutting numeric desired fixed values. 2024-12-12 options date/datetime/time grouping/factoring. Included weekday month-options. 2024-12-12 Graphs plots Correlation matrix plot data exploration 2025-2-20 Grotta bars ordianl outcomes Coefficient plotting regression analyses (forest plot) 2025-2-20","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2025). freesearcheR: Browser Based Data Analysis. R package version 25.3.2, https://agdamsbo.github.io/freesearcheR/, https://github.com/agdamsbo/freesearcheR.","code":"@Manual{, title = {freesearcheR: Browser Based Data Analysis}, author = {Andreas Gammelgaard Damsbo}, year = {2025}, note = {R package version 25.3.2, https://agdamsbo.github.io/freesearcheR/}, url = {https://github.com/agdamsbo/freesearcheR}, }"},{"path":"https://agdamsbo.github.io/freesearcheR/index.html","id":"freesearcher","dir":"","previous_headings":"","what":"Browser Based Data Analysis","title":"Browser Based Data Analysis","text":"package backbone freesearcheR, free open-source browser based data exploration analysis tool clinicians researchers publication ready output. package freesearcheR-tool part larger initiative democratize health data analysis remove barriers clinicians engage health research. freesearcheR-tool online accessible : link app freely hosted shinyapps.io. feedback welcome can shared GitHub issue. Initiatives funding continued development tool surrounding initiatives ongoing.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/index.html","id":"install-locally","dir":"","previous_headings":"","what":"Install locally","title":"Browser Based Data Analysis","text":"freesearcheR-tool can also launched locally. data.frame available global environment accessible interface.","code":"require(\"devtools\") devtools::install_github(\"agdamsbo/freesearcheR\") library(freesearcheR) # By loading mtcars to the environment, it will be available # in the interface like any other data.frame data(mtcars) shiny_freesearcheR()"},{"path":"https://agdamsbo.github.io/freesearcheR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Browser Based Data Analysis","text":"Please note freesearcheR project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\")"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |> overview_vars() |> toastui::datagrid() |> add_class_icon() {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[6,6,4,6,8,6,8,4,4,6,6,8,8,8,8,8,8,4,4,4,4,8,8,8,8,4,4,4,8,6,8,4],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[0,0,1,1,0,1,0,1,1,1,1,0,0,0,0,0,0,1,1,1,1,0,0,0,0,1,0,1,0,0,0,1],[1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,1,1,1,1,1,1,1],[4,4,4,3,3,3,3,4,4,4,4,3,3,3,3,3,3,4,4,4,3,3,3,3,3,4,5,5,5,5,5,4],[4,4,1,1,2,1,4,2,2,4,4,3,3,3,4,4,4,1,2,1,1,2,2,4,2,1,2,2,4,6,8,2]]],\"colnames\":[\"class\",\"type\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.format\",\"options\":{\"formatted\":[\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\"]}},\"width\":60},{\"header\":\"type\",\"name\":\"type\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}}],\"bodyHeight\":\"fitToParent\",\"draggable\":false,\"usageStatistics\":false,\"contextMenu\":null,\"rowHeight\":\"auto\"},\"theme\":\"clean\",\"themeOptions\":{\"cell\":{\"normal\":{\"showHorizontalBorder\":true}}},\"language\":\"en\",\"languageOptions\":[],\"filters\":false,\"rowAttributes\":[],\"validationInput\":false,\"dataAsInput\":false,\"dragInput\":false},\"evals\":[\"options.columns.0.renderer.type\"],\"jsHooks\":[]}"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":null,"dir":"Reference","previous_headings":"","what":"Add sparkline to datagrid — add_sparkline","title":"Add sparkline to datagrid — add_sparkline","text":"Add sparkline datagrid","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"add_sparkline( grid, column = \"vals\", color.main = \"#2a8484\", color.sec = \"#84EF84\" )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add sparkline to datagrid — add_sparkline","text":"grid grid column clumn transform","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add sparkline to datagrid — add_sparkline","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"grid <- mtcars |> default_parsing() |> overview_vars() |> toastui::datagrid() |> add_sparkline() grid {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"factor\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"factor\",\"factor\",\"factor\",\"factor\"],[\"numeric\",\"factor\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"factor\",\"factor\",\"factor\",\"factor\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[\"6\",\"6\",\"4\",\"6\",\"8\",\"6\",\"8\",\"4\",\"4\",\"6\",\"6\",\"8\",\"8\",\"8\",\"8\",\"8\",\"8\",\"4\",\"4\",\"4\",\"4\",\"8\",\"8\",\"8\",\"8\",\"4\",\"4\",\"4\",\"8\",\"6\",\"8\",\"4\"],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[\"0\",\"0\",\"1\",\"1\",\"0\",\"1\",\"0\",\"1\",\"1\",\"1\",\"1\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"1\",\"1\",\"1\",\"1\",\"0\",\"0\",\"0\",\"0\",\"1\",\"0\",\"1\",\"0\",\"0\",\"0\",\"1\"],[\"1\",\"1\",\"1\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"0\",\"1\",\"1\",\"1\",\"0\",\"0\",\"0\",\"0\",\"0\",\"1\",\"1\",\"1\",\"1\",\"1\",\"1\",\"1\"],[\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"3\",\"4\",\"5\",\"5\",\"5\",\"5\",\"5\",\"4\"],[\"4\",\"4\",\"1\",\"1\",\"2\",\"1\",\"4\",\"2\",\"2\",\"4\",\"4\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"1\",\"2\",\"1\",\"1\",\"2\",\"2\",\"4\",\"2\",\"1\",\"2\",\"2\",\"4\",\"6\",\"8\",\"2\"]]],\"colnames\":[\"class\",\"type\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"type\",\"name\":\"type\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.htmlwidgets\",\"options\":{\"rendered\":[\"<\\/div>\\n