mirror of
https://github.com/agdamsbo/FreesearchR.git
synced 2026-06-19 04:27:30 +02:00
Deploying to gh-pages from @ agdamsbo/freesearcheR@2588cf2b4f 🚀
This commit is contained in:
agdamsbo
parent
c3e4c9c9a5
commit
367892ec75
75 changed files with 25848 additions and 0 deletions
77
reference/argsstring2list.html
Normal file
77
reference/argsstring2list.html
Normal file
|
|
@ -0,0 +1,77 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Convert string of arguments to list of arguments — argsstring2list • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Convert string of arguments to list of arguments — argsstring2list"><meta name="description" content="Idea from the answer: https://stackoverflow.com/a/62979238"><meta property="og:description" content="Idea from the answer: https://stackoverflow.com/a/62979238"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Convert string of arguments to list of arguments</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/helpers.R" class="external-link"><code>R/helpers.R</code></a></small>
|
||||
<div class="d-none name"><code>argsstring2list.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Idea from the answer: https://stackoverflow.com/a/62979238</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">argsstring2list</span><span class="op">(</span><span class="va">string</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-string">string<a class="anchor" aria-label="anchor" href="#arg-string"></a></dt>
|
||||
<dd><p>string to convert to list to use with do.call</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>list</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
195
reference/baseline_table.html
Normal file
195
reference/baseline_table.html
Normal file
|
|
@ -0,0 +1,195 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Print a flexible baseline characteristics table — baseline_table • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Print a flexible baseline characteristics table — baseline_table"><meta name="description" content="Print a flexible baseline characteristics table"><meta property="og:description" content="Print a flexible baseline characteristics table"><!-- dependencies from examples --></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Print a flexible baseline characteristics table</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/baseline_table.R" class="external-link"><code>R/baseline_table.R</code></a></small>
|
||||
<div class="d-none name"><code>baseline_table.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Print a flexible baseline characteristics table</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">baseline_table</span><span class="op">(</span></span>
|
||||
<span> <span class="va">data</span>,</span>
|
||||
<span> fun.args <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> fun <span class="op">=</span> <span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/tbl_summary.html" class="external-link">tbl_summary</a></span>,</span>
|
||||
<span> vars <span class="op">=</span> <span class="cn">NULL</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data set</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-fun-args">fun.args<a class="anchor" aria-label="anchor" href="#arg-fun-args"></a></dt>
|
||||
<dd><p>list of arguments passed to</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-fun">fun<a class="anchor" aria-label="anchor" href="#arg-fun"></a></dt>
|
||||
<dd><p>function to</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-vars">vars<a class="anchor" aria-label="anchor" href="#arg-vars"></a></dt>
|
||||
<dd><p>character vector of variables to include</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>object of standard class for fun</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">baseline_table</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<div class="gt-table"><div id="mwlefoodfi" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
|
||||
|
||||
<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF"><thead style="border-style: none;"><tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;"><th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="label" style="border-style: none; color: #333333; background-color: #FFFFFF; font-size: 100%; font-weight: normal; text-transform: inherit; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: bottom; padding-top: 5px; padding-bottom: 6px; padding-left: 5px; padding-right: 5px; overflow-x: hidden; text-align: left;" bgcolor="#FFFFFF" valign="bottom" align="left"><span class="gt_from_md"><strong style="margin-top: 0; margin-bottom: 0;">Characteristic</strong></span></th>
|
||||
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_0" style="border-style: none; color: #333333; background-color: #FFFFFF; font-size: 100%; font-weight: normal; text-transform: inherit; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: bottom; padding-top: 5px; padding-bottom: 6px; padding-left: 5px; padding-right: 5px; overflow-x: hidden; text-align: center;" bgcolor="#FFFFFF" valign="bottom" align="center"><span class="gt_from_md"><strong style="margin-top: 0; margin-bottom: 0;">N = 32</strong></span><span class="gt_footnote_marks" style="font-size: 75%; vertical-align: 0.4em; position: initial; white-space: nowrap; font-style: italic; font-weight: normal; line-height: 0;"><sup>1</sup></span></th>
|
||||
</tr></thead><tbody class="gt_table_body" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3;"><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">mpg</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">19.2 (15.4, 22.8)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">cyl</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center"><br></td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 4</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">11 (34%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 6</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">7 (22%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 8</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">14 (44%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">disp</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">196 (121, 334)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">hp</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">123 (96, 180)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">drat</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3.70 (3.08, 3.92)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">wt</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3.33 (2.54, 3.65)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">qsec</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">17.71 (16.89, 18.90)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">vs</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">14 (44%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">am</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">13 (41%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">gear</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center"><br></td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 3</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">15 (47%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 4</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">12 (38%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 5</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">5 (16%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">carb</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center"><br></td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 1</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">7 (22%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 2</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">10 (31%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 3</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3 (9.4%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 4</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">10 (31%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 6</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">1 (3.1%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 8</td>
|
||||
<td headers="stat_0" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">1 (3.1%)</td></tr></tbody><tfoot class="gt_footnotes" style="border-style: none; color: #333333; background-color: #FFFFFF; border-bottom-style: none; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3;" bgcolor="#FFFFFF"><tr style="border-style: none;"><td class="gt_footnote" colspan="2" style="border-style: none; margin: 0px; font-size: 90%; padding-top: 4px; padding-bottom: 4px; padding-left: 5px; padding-right: 5px;"><span class="gt_footnote_marks" style="font-size: 75%; vertical-align: 0.4em; position: initial; white-space: nowrap; font-style: italic; font-weight: normal; line-height: 0;"><sup>1</sup></span> <span class="gt_from_md">Median (Q1, Q3); n (%)</span></td>
|
||||
</tr></tfoot></table></div></div><span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">baseline_table</span><span class="op">(</span>fun.args <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>by <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<div class="gt-table"><div id="dpbcyvkguf" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
|
||||
|
||||
<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF"><thead style="border-style: none;"><tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;"><th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="label" style="border-style: none; color: #333333; background-color: #FFFFFF; font-size: 100%; font-weight: normal; text-transform: inherit; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: bottom; padding-top: 5px; padding-bottom: 6px; padding-left: 5px; padding-right: 5px; overflow-x: hidden; text-align: left;" bgcolor="#FFFFFF" valign="bottom" align="left"><span class="gt_from_md"><strong style="margin-top: 0; margin-bottom: 0;">Characteristic</strong></span></th>
|
||||
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_1" style="border-style: none; color: #333333; background-color: #FFFFFF; font-size: 100%; font-weight: normal; text-transform: inherit; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: bottom; padding-top: 5px; padding-bottom: 6px; padding-left: 5px; padding-right: 5px; overflow-x: hidden; text-align: center;" bgcolor="#FFFFFF" valign="bottom" align="center"><span class="gt_from_md"><strong style="margin-top: 0;">3</strong><br style="margin-bottom: 0;">
|
||||
N = 15</span><span class="gt_footnote_marks" style="font-size: 75%; vertical-align: 0.4em; position: initial; white-space: nowrap; font-style: italic; font-weight: normal; line-height: 0;"><sup>1</sup></span></th>
|
||||
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_2" style="border-style: none; color: #333333; background-color: #FFFFFF; font-size: 100%; font-weight: normal; text-transform: inherit; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: bottom; padding-top: 5px; padding-bottom: 6px; padding-left: 5px; padding-right: 5px; overflow-x: hidden; text-align: center;" bgcolor="#FFFFFF" valign="bottom" align="center"><span class="gt_from_md"><strong style="margin-top: 0;">4</strong><br style="margin-bottom: 0;">
|
||||
N = 12</span><span class="gt_footnote_marks" style="font-size: 75%; vertical-align: 0.4em; position: initial; white-space: nowrap; font-style: italic; font-weight: normal; line-height: 0;"><sup>1</sup></span></th>
|
||||
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_3" style="border-style: none; color: #333333; background-color: #FFFFFF; font-size: 100%; font-weight: normal; text-transform: inherit; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: bottom; padding-top: 5px; padding-bottom: 6px; padding-left: 5px; padding-right: 5px; overflow-x: hidden; text-align: center;" bgcolor="#FFFFFF" valign="bottom" align="center"><span class="gt_from_md"><strong style="margin-top: 0;">5</strong><br style="margin-bottom: 0;">
|
||||
N = 5</span><span class="gt_footnote_marks" style="font-size: 75%; vertical-align: 0.4em; position: initial; white-space: nowrap; font-style: italic; font-weight: normal; line-height: 0;"><sup>1</sup></span></th>
|
||||
</tr></thead><tbody class="gt_table_body" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3;"><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">mpg</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">15.5 (14.3, 18.7)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">22.8 (21.0, 28.9)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">19.7 (15.8, 26.0)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">cyl</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center"><br></td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center"><br></td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center"><br></td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 4</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">1 (6.7%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">8 (67%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">2 (40%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 6</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">2 (13%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">4 (33%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">1 (20%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 8</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">12 (80%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">0 (0%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">2 (40%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">disp</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">318 (276, 400)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">131 (79, 160)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">145 (120, 301)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">hp</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">180 (150, 215)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">94 (66, 110)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">175 (113, 264)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">drat</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3.08 (3.00, 3.21)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3.92 (3.90, 4.10)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3.77 (3.62, 4.22)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">wt</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3.73 (3.44, 4.07)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">2.70 (2.07, 3.17)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">2.77 (2.14, 3.17)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">qsec</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">17.42 (17.02, 18.00)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">18.76 (18.41, 19.69)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">15.50 (14.60, 16.70)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">vs</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3 (20%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">10 (83%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">1 (20%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">am</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">0 (0%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">8 (67%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">5 (100%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left">carb</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center"><br></td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center"><br></td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center"><br></td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 1</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3 (20%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">4 (33%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">0 (0%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 2</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">4 (27%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">4 (33%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">2 (40%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 3</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">3 (20%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">0 (0%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">0 (0%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 4</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">5 (33%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">4 (33%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">1 (20%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 6</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">0 (0%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">0 (0%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">1 (20%)</td></tr><tr style="border-style: none;"><td headers="label" class="gt_row gt_left" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: left;" valign="middle" align="left"> 8</td>
|
||||
<td headers="stat_1" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">0 (0%)</td>
|
||||
<td headers="stat_2" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">0 (0%)</td>
|
||||
<td headers="stat_3" class="gt_row gt_center" style="border-style: none; padding-top: 8px; padding-bottom: 8px; padding-left: 5px; padding-right: 5px; margin: 10px; border-top-style: solid; border-top-width: 1px; border-top-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3; vertical-align: middle; overflow-x: hidden; text-align: center;" valign="middle" align="center">1 (20%)</td></tr></tbody><tfoot class="gt_footnotes" style="border-style: none; color: #333333; background-color: #FFFFFF; border-bottom-style: none; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3;" bgcolor="#FFFFFF"><tr style="border-style: none;"><td class="gt_footnote" colspan="4" style="border-style: none; margin: 0px; font-size: 90%; padding-top: 4px; padding-bottom: 4px; padding-left: 5px; padding-right: 5px;"><span class="gt_footnote_marks" style="font-size: 75%; vertical-align: 0.4em; position: initial; white-space: nowrap; font-style: italic; font-weight: normal; line-height: 0;"><sup>1</sup></span> <span class="gt_from_md">Median (Q1, Q3); n (%)</span></td>
|
||||
</tr></tfoot></table></div></div></code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
86
reference/custom_theme.html
Normal file
86
reference/custom_theme.html
Normal file
|
|
@ -0,0 +1,86 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Custom theme based on unity — custom_theme • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Custom theme based on unity — custom_theme"><meta name="description" content="Custom theme based on unity"><meta property="og:description" content="Custom theme based on unity"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Custom theme based on unity</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/theme.R" class="external-link"><code>R/theme.R</code></a></small>
|
||||
<div class="d-none name"><code>custom_theme.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Custom theme based on unity</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">custom_theme</span><span class="op">(</span></span>
|
||||
<span> <span class="va">...</span>,</span>
|
||||
<span> version <span class="op">=</span> <span class="fl">5</span>,</span>
|
||||
<span> primary <span class="op">=</span> <span class="st">"#1E4A8F"</span>,</span>
|
||||
<span> secondary <span class="op">=</span> <span class="st">"#FF6F61"</span>,</span>
|
||||
<span> bootswatch <span class="op">=</span> <span class="st">"united"</span>,</span>
|
||||
<span> base_font <span class="op">=</span> <span class="fu">bslib</span><span class="fu">::</span><span class="fu"><a href="https://rstudio.github.io/sass/reference/font_face.html" class="external-link">font_google</a></span><span class="op">(</span><span class="st">"Montserrat"</span><span class="op">)</span>,</span>
|
||||
<span> heading_font <span class="op">=</span> <span class="fu">bslib</span><span class="fu">::</span><span class="fu"><a href="https://rstudio.github.io/sass/reference/font_face.html" class="external-link">font_google</a></span><span class="op">(</span><span class="st">"Public Sans"</span>, wght <span class="op">=</span> <span class="st">"700"</span><span class="op">)</span>,</span>
|
||||
<span> code_font <span class="op">=</span> <span class="fu">bslib</span><span class="fu">::</span><span class="fu"><a href="https://rstudio.github.io/sass/reference/font_face.html" class="external-link">font_google</a></span><span class="op">(</span><span class="st">"Open Sans"</span><span class="op">)</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>everything passed on to bslib::bs_theme()</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>theme list</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
130
reference/cut-variable.html
Normal file
130
reference/cut-variable.html
Normal file
|
|
@ -0,0 +1,130 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Module to Convert Numeric to Factor — cut-variable • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Module to Convert Numeric to Factor — cut-variable"><meta name="description" content="This module contain an interface to cut a numeric into several intervals."><meta property="og:description" content="This module contain an interface to cut a numeric into several intervals."></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Module to Convert Numeric to Factor</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/cut-variable-dates.R" class="external-link"><code>R/cut-variable-dates.R</code></a></small>
|
||||
<div class="d-none name"><code>cut-variable.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>This module contain an interface to cut a numeric into several intervals.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">cut_variable_ui</span><span class="op">(</span><span class="va">id</span><span class="op">)</span></span>
|
||||
<span></span>
|
||||
<span><span class="fu">cut_variable_server</span><span class="op">(</span><span class="va">id</span>, data_r <span class="op">=</span> <span class="fu">reactive</span><span class="op">(</span><span class="cn">NULL</span><span class="op">)</span><span class="op">)</span></span>
|
||||
<span></span>
|
||||
<span><span class="fu">modal_cut_variable</span><span class="op">(</span></span>
|
||||
<span> <span class="va">id</span>,</span>
|
||||
<span> title <span class="op">=</span> <span class="fu">i18n</span><span class="op">(</span><span class="st">"Convert Numeric to Factor"</span><span class="op">)</span>,</span>
|
||||
<span> easyClose <span class="op">=</span> <span class="cn">TRUE</span>,</span>
|
||||
<span> size <span class="op">=</span> <span class="st">"l"</span>,</span>
|
||||
<span> footer <span class="op">=</span> <span class="cn">NULL</span></span>
|
||||
<span><span class="op">)</span></span>
|
||||
<span></span>
|
||||
<span><span class="fu">winbox_cut_variable</span><span class="op">(</span></span>
|
||||
<span> <span class="va">id</span>,</span>
|
||||
<span> title <span class="op">=</span> <span class="fu">i18n</span><span class="op">(</span><span class="st">"Convert Numeric to Factor"</span><span class="op">)</span>,</span>
|
||||
<span> options <span class="op">=</span> <span class="fu">shinyWidgets</span><span class="fu">::</span><span class="fu"><a href="https://dreamrs.github.io/shinyWidgets/reference/wbOptions.html" class="external-link">wbOptions</a></span><span class="op">(</span><span class="op">)</span>,</span>
|
||||
<span> controls <span class="op">=</span> <span class="fu">shinyWidgets</span><span class="fu">::</span><span class="fu"><a href="https://dreamrs.github.io/shinyWidgets/reference/wbControls.html" class="external-link">wbControls</a></span><span class="op">(</span><span class="op">)</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-id">id<a class="anchor" aria-label="anchor" href="#arg-id"></a></dt>
|
||||
<dd><p>Module ID.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-data-r">data_r<a class="anchor" aria-label="anchor" href="#arg-data-r"></a></dt>
|
||||
<dd><p>A <code><a href="https://rdrr.io/pkg/shiny/man/reactive.html" class="external-link">shiny::reactive()</a></code> function returning a <code>data.frame</code>.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-title">title<a class="anchor" aria-label="anchor" href="#arg-title"></a></dt>
|
||||
<dd><p>An optional title for the dialog.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-easyclose">easyClose<a class="anchor" aria-label="anchor" href="#arg-easyclose"></a></dt>
|
||||
<dd><p>If <code>TRUE</code>, the modal dialog can be dismissed by
|
||||
clicking outside the dialog box, or be pressing the Escape key. If
|
||||
<code>FALSE</code> (the default), the modal dialog can't be dismissed in those
|
||||
ways; instead it must be dismissed by clicking on a <code>modalButton()</code>, or
|
||||
from a call to <code><a href="https://rdrr.io/pkg/shiny/man/showModal.html" class="external-link">removeModal()</a></code> on the server.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-size">size<a class="anchor" aria-label="anchor" href="#arg-size"></a></dt>
|
||||
<dd><p>One of <code>"s"</code> for small, <code>"m"</code> (the default) for medium,
|
||||
<code>"l"</code> for large, or <code>"xl"</code> for extra large. Note that <code>"xl"</code> only
|
||||
works with Bootstrap 4 and above (to opt-in to Bootstrap 4+,
|
||||
pass <code><a href="https://rstudio.github.io/bslib/reference/bs_theme.html" class="external-link">bslib::bs_theme()</a></code> to the <code>theme</code> argument of a page container
|
||||
like <code><a href="https://rdrr.io/pkg/shiny/man/fluidPage.html" class="external-link">fluidPage()</a></code>).</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-footer">footer<a class="anchor" aria-label="anchor" href="#arg-footer"></a></dt>
|
||||
<dd><p>UI for footer. Use <code>NULL</code> for no footer.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-options">options<a class="anchor" aria-label="anchor" href="#arg-options"></a></dt>
|
||||
<dd><p>List of options, see <code><a href="https://dreamrs.github.io/shinyWidgets/reference/wbOptions.html" class="external-link">wbOptions()</a></code>.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-controls">controls<a class="anchor" aria-label="anchor" href="#arg-controls"></a></dt>
|
||||
<dd><p>List of controls, see <code><a href="https://dreamrs.github.io/shinyWidgets/reference/wbControls.html" class="external-link">wbControls()</a></code>.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>A <code><a href="https://rdrr.io/pkg/shiny/man/reactive.html" class="external-link">shiny::reactive()</a></code> function returning the data.</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
8
reference/cut.Date.html
Normal file
8
reference/cut.Date.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/cut.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/cut.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
8
reference/cut.POSIXct.html
Normal file
8
reference/cut.POSIXct.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/cut.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/cut.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
8
reference/cut.POSIXt.html
Normal file
8
reference/cut.POSIXt.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/cut.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/cut.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
166
reference/cut.html
Normal file
166
reference/cut.html
Normal file
|
|
@ -0,0 +1,166 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Title — cut.hms • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Title — cut.hms"><meta name="description" content="Title"><meta property="og:description" content="Title"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Title</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/cut-variable-dates.R" class="external-link"><code>R/cut-variable-dates.R</code></a></small>
|
||||
<div class="d-none name"><code>cut.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Title</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for class 'hms'</span></span>
|
||||
<span><span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">breaks</span>, <span class="va">...</span><span class="op">)</span></span>
|
||||
<span></span>
|
||||
<span><span class="co"># S3 method for class 'POSIXt'</span></span>
|
||||
<span><span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span></span>
|
||||
<span> <span class="va">x</span>,</span>
|
||||
<span> <span class="va">breaks</span>,</span>
|
||||
<span> right <span class="op">=</span> <span class="cn">FALSE</span>,</span>
|
||||
<span> include.lowest <span class="op">=</span> <span class="cn">TRUE</span>,</span>
|
||||
<span> start.on.monday <span class="op">=</span> <span class="cn">TRUE</span>,</span>
|
||||
<span> <span class="va">...</span></span>
|
||||
<span><span class="op">)</span></span>
|
||||
<span></span>
|
||||
<span><span class="co"># S3 method for class 'POSIXct'</span></span>
|
||||
<span><span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span></span>
|
||||
<span> <span class="va">x</span>,</span>
|
||||
<span> <span class="va">breaks</span>,</span>
|
||||
<span> right <span class="op">=</span> <span class="cn">FALSE</span>,</span>
|
||||
<span> include.lowest <span class="op">=</span> <span class="cn">TRUE</span>,</span>
|
||||
<span> start.on.monday <span class="op">=</span> <span class="cn">TRUE</span>,</span>
|
||||
<span> <span class="va">...</span></span>
|
||||
<span><span class="op">)</span></span>
|
||||
<span></span>
|
||||
<span><span class="co"># S3 method for class 'Date'</span></span>
|
||||
<span><span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">breaks</span>, start.on.monday <span class="op">=</span> <span class="cn">TRUE</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
|
||||
<dd><p>an object inheriting from class "POSIXct"</p></dd>
|
||||
|
||||
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>passed on</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>factor</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/parse_datetime.html" class="external-link">parse_time</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"01:00:20"</span>, <span class="st">"03:00:20"</span>, <span class="st">"01:20:20"</span>, <span class="st">"08:20:20"</span>, <span class="st">"21:20:20"</span>, <span class="st">"03:02:20"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span><span class="fl">2</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 01:00:20 01:00:20 01:00:20 03:01:20 <NA> 03:01:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> attr(,"brks")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 01:00:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 03:01:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21:20:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Levels: 01:00:20 03:01:20</span>
|
||||
<span class="r-in"><span><span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/parse_datetime.html" class="external-link">parse_time</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"01:00:20"</span>, <span class="st">"03:00:20"</span>, <span class="st">"01:20:20"</span>, <span class="st">"08:20:20"</span>, <span class="st">"21:20:20"</span>, <span class="st">"03:02:20"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span><span class="st">"min"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 01:00:00 03:00:00 01:20:00 08:20:00 21:20:00 03:02:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> attr(,"brks")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 01:00:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 01:20:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 03:00:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 03:02:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 08:20:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21:20:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21:20:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Levels: 01:00:00 01:20:00 03:00:00 03:02:00 08:20:00 21:20:00</span>
|
||||
<span class="r-in"><span><span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/parse_datetime.html" class="external-link">parse_time</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"01:00:20"</span>, <span class="st">"03:00:20"</span>, <span class="st">"01:20:20"</span>, <span class="st">"08:20:20"</span>, <span class="st">"21:20:20"</span>, <span class="st">"03:02:20"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span>breaks <span class="op">=</span> <span class="st">"hour"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 01:00:00 03:00:00 01:00:00 08:00:00 21:00:00 03:00:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> attr(,"brks")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 01:00:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 03:00:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 08:00:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21:00:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21:20:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Levels: 01:00:00 03:00:00 08:00:00 21:00:00</span>
|
||||
<span class="r-in"><span><span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/parse_datetime.html" class="external-link">parse_time</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"01:00:20"</span>, <span class="st">"03:00:20"</span>, <span class="st">"01:20:20"</span>, <span class="st">"08:20:20"</span>, <span class="st">"21:20:20"</span>, <span class="st">"03:02:20"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span>breaks <span class="op">=</span> <span class="fu">hms</span><span class="fu">::</span><span class="fu"><a href="https://hms.tidyverse.org/reference/hms.html" class="external-link">as_hms</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"01:00:00"</span>, <span class="st">"03:01:20"</span>, <span class="st">"9:20:20"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 01:00:00 01:00:00 01:00:00 03:01:20 <NA> 03:01:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> attr(,"brks")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 01:00:00</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 03:01:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 09:20:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Levels: 01:00:00 03:01:20</span>
|
||||
<span class="r-in"><span><span class="va">d_t</span> <span class="op"><-</span> <span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/parse_datetime.html" class="external-link">parse_time</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"01:00:20"</span>, <span class="st">"03:00:20"</span>, <span class="st">"01:20:20"</span>, <span class="st">"03:02:20"</span>, <span class="cn">NA</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">f</span> <span class="op"><-</span> <span class="va">d_t</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span><span class="fl">2</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/parse_datetime.html" class="external-link">parse_time</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"01:00:20"</span>, <span class="st">"03:00:20"</span>, <span class="st">"01:20:20"</span>, <span class="st">"03:02:20"</span>, <span class="cn">NA</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span>breaks <span class="op">=</span> <span class="fu">lubridate</span><span class="fu">::</span><span class="fu"><a href="https://lubridate.tidyverse.org/reference/as_date.html" class="external-link">as_datetime</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fu">hms</span><span class="fu">::</span><span class="fu"><a href="https://hms.tidyverse.org/reference/hms.html" class="external-link">as_hms</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/levels.html" class="external-link">levels</a></span><span class="op">(</span><span class="va">f</span><span class="op">)</span><span class="op">)</span>, <span class="fu">hms</span><span class="fu">::</span><span class="fu"><a href="https://hms.tidyverse.org/reference/hms.html" class="external-link">as_hms</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Extremes.html" class="external-link">max</a></span><span class="op">(</span><span class="va">d_t</span>, na.rm <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span> <span class="op">+</span> <span class="fl">1</span><span class="op">)</span><span class="op">)</span><span class="op">)</span>, right <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></span>
|
||||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>tz(): Don't know how to compute timezone for object of class hms/difftime; returning "UTC".</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 01:00:20 02:10:20 01:00:20 02:10:20 <NA> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> attr(,"brks")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 01:00:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 02:10:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 03:02:21</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Levels: 01:00:20 02:10:20</span>
|
||||
<span class="r-in"><span><span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/parse_datetime.html" class="external-link">parse_datetime</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"1992-02-01 01:00:20"</span>, <span class="st">"1992-02-06 03:00:20"</span>, <span class="st">"1992-05-01 01:20:20"</span>, <span class="st">"1992-09-01 08:20:20"</span>, <span class="st">"1999-02-01 21:20:20"</span>, <span class="st">"1992-12-01 03:02:20"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span><span class="fl">2</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 1992-02-01 01:00:20 1992-02-01 01:00:20 1992-02-01 01:00:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [4] 1992-02-01 01:00:20 1999-02-01 21:20:20 1992-02-01 01:00:20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Levels: 1992-02-01 01:00:20 1999-02-01 21:20:20</span>
|
||||
<span class="r-in"><span><span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/parse_datetime.html" class="external-link">parse_datetime</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"1992-02-01 01:00:20"</span>, <span class="st">"1992-02-06 03:00:20"</span>, <span class="st">"1992-05-01 01:20:20"</span>, <span class="st">"1992-09-01 08:20:20"</span>, <span class="st">"1999-02-01 21:20:20"</span>, <span class="st">"1992-12-01 03:02:20"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span>breaks<span class="op">=</span><span class="st">"weekday"</span><span class="op">)</span></span></span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in cut.POSIXt(readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")), breaks = "weekday"):</span> invalid specification of 'breaks'</span>
|
||||
<span class="r-in"><span><span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/parse_datetime.html" class="external-link">parse_datetime</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"1992-02-01 01:00:20"</span>, <span class="st">"1992-02-06 03:00:20"</span>, <span class="st">"1992-05-01 01:20:20"</span>, <span class="st">"1992-09-01 08:20:20"</span>, <span class="st">"1999-02-01 21:20:20"</span>, <span class="st">"1992-12-01 03:02:20"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span>breaks<span class="op">=</span><span class="st">"month_only"</span><span class="op">)</span></span></span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in cut.POSIXt(readr::parse_datetime(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")), breaks = "month_only"):</span> invalid specification of 'breaks'</span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/as.Date.html" class="external-link">as.Date</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"1992-02-01 01:00:20"</span>, <span class="st">"1992-02-06 03:00:20"</span>, <span class="st">"1992-05-01 01:20:20"</span>, <span class="st">"1992-09-01 08:20:20"</span>, <span class="st">"1999-02-01 21:20:20"</span>, <span class="st">"1992-12-01 03:02:20"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span><span class="fl">2</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 1992-02-01 1992-02-01 1992-02-01 1992-02-01 1999-02-01 1992-02-01</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Levels: 1992-02-01 1999-02-01</span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/as.Date.html" class="external-link">as.Date</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"1992-02-01 01:00:20"</span>, <span class="st">"1992-02-06 03:00:20"</span>, <span class="st">"1992-05-01 01:20:20"</span>, <span class="st">"1992-09-01 08:20:20"</span>, <span class="st">"1999-02-01 21:20:20"</span>, <span class="st">"1992-12-01 03:02:20"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/cut.html" class="external-link">cut</a></span><span class="op">(</span>breaks<span class="op">=</span><span class="st">"weekday"</span><span class="op">)</span></span></span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in cut.Date(as.Date(c("1992-02-01 01:00:20", "1992-02-06 03:00:20", "1992-05-01 01:20:20", "1992-09-01 08:20:20", "1999-02-01 21:20:20", "1992-12-01 03:02:20")), breaks = "weekday"):</span> invalid specification of 'breaks'</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
8
reference/cut_variable_server.html
Normal file
8
reference/cut_variable_server.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
8
reference/cut_variable_ui.html
Normal file
8
reference/cut_variable_ui.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
69
reference/default_format_arguments.html
Normal file
69
reference/default_format_arguments.html
Normal file
|
|
@ -0,0 +1,69 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Defaults qmd formats — default_format_arguments • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Defaults qmd formats — default_format_arguments"><meta name="description" content="Defaults qmd formats"><meta property="og:description" content="Defaults qmd formats"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Defaults qmd formats</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/report.R" class="external-link"><code>R/report.R</code></a></small>
|
||||
<div class="d-none name"><code>default_format_arguments.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Defaults qmd formats</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">default_format_arguments</span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>list</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
109
reference/default_parsing.html
Normal file
109
reference/default_parsing.html
Normal file
|
|
@ -0,0 +1,109 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Default data parsing — default_parsing • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Default data parsing — default_parsing"><meta name="description" content="Default data parsing"><meta property="og:description" content="Default data parsing"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Default data parsing</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/helpers.R" class="external-link"><code>R/helpers.R</code></a></small>
|
||||
<div class="d-none name"><code>default_parsing.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Default data parsing</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">default_parsing</span><span class="op">(</span><span class="va">data</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>data.frame or tibble</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 'data.frame': 32 obs. of 11 variables:</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ mpg : num 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ cyl : num 6 6 4 6 8 6 8 4 4 6 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ disp: num 160 160 108 258 360 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ hp : num 110 110 93 110 175 105 245 62 95 123 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ drat: num 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ wt : num 2.62 2.88 2.32 3.21 3.44 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ qsec: num 16.5 17 18.6 19.4 17 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ vs : num 0 0 1 1 0 1 0 1 1 1 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ am : num 1 1 1 0 0 0 0 0 0 0 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ gear: num 4 4 4 3 3 3 3 4 4 4 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ carb: num 4 4 1 1 2 1 4 2 2 4 ...</span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">default_parsing</span><span class="op">(</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> tibble [32 × 11] (S3: tbl_df/tbl/data.frame)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ cyl : Factor w/ 3 levels "4","6","8": 2 2 1 2 3 2 3 1 1 2 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ disp: num [1:32] 160 160 108 258 360 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ hp : num [1:32] 110 110 93 110 175 105 245 62 95 123 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ wt : num [1:32] 2.62 2.88 2.32 3.21 3.44 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ vs : Factor w/ 2 levels "0","1": 1 1 2 2 1 2 1 2 2 2 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ am : Factor w/ 2 levels "0","1": 2 2 2 1 1 1 1 1 1 1 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ gear: Factor w/ 3 levels "3","4","5": 2 2 2 1 1 1 1 2 2 2 ...</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $ carb: Factor w/ 6 levels "1","2","3","4",..: 4 4 1 1 2 1 4 2 2 4 ...</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
81
reference/factorize.html
Normal file
81
reference/factorize.html
Normal file
|
|
@ -0,0 +1,81 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Factorize variables in data.frame — factorize • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Factorize variables in data.frame — factorize"><meta name="description" content="Factorize variables in data.frame"><meta property="og:description" content="Factorize variables in data.frame"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Factorize variables in data.frame</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/helpers.R" class="external-link"><code>R/helpers.R</code></a></small>
|
||||
<div class="d-none name"><code>factorize.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Factorize variables in data.frame</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">factorize</span><span class="op">(</span><span class="va">data</span>, <span class="va">vars</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data.frame</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-vars">vars<a class="anchor" aria-label="anchor" href="#arg-vars"></a></dt>
|
||||
<dd><p>variables to force factorize</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>data.frame</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
89
reference/file_export.html
Normal file
89
reference/file_export.html
Normal file
|
|
@ -0,0 +1,89 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Title — file_export • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Title — file_export"><meta name="description" content="Title"><meta property="og:description" content="Title"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Title</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/helpers.R" class="external-link"><code>R/helpers.R</code></a></small>
|
||||
<div class="d-none name"><code>file_export.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Title</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">file_export</span><span class="op">(</span><span class="va">data</span>, output.format <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"df"</span>, <span class="st">"teal"</span>, <span class="st">"list"</span><span class="op">)</span>, <span class="va">filename</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-output-format">output.format<a class="anchor" aria-label="anchor" href="#arg-output-format"></a></dt>
|
||||
<dd><p>output</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-filename">filename<a class="anchor" aria-label="anchor" href="#arg-filename"></a></dt>
|
||||
<dd><p>filename</p></dd>
|
||||
|
||||
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>passed on</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>data</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
81
reference/format_writer.html
Normal file
81
reference/format_writer.html
Normal file
|
|
@ -0,0 +1,81 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Merges list of named arguments for qmd header generation — format_writer • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Merges list of named arguments for qmd header generation — format_writer"><meta name="description" content="Merges list of named arguments for qmd header generation"><meta property="og:description" content="Merges list of named arguments for qmd header generation"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Merges list of named arguments for qmd header generation</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/report.R" class="external-link"><code>R/report.R</code></a></small>
|
||||
<div class="d-none name"><code>format_writer.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Merges list of named arguments for qmd header generation</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">format_writer</span><span class="op">(</span><span class="va">data</span>, <span class="va">name</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>vector</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-name">name<a class="anchor" aria-label="anchor" href="#arg-name"></a></dt>
|
||||
<dd><p>name</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>vector</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
156
reference/getfun.html
Normal file
156
reference/getfun.html
Normal file
|
|
@ -0,0 +1,156 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun"><meta name="description" content="This function follows the idea from this comment: https://stackoverflow.com/questions/38983179/do-call-a-function-in-r-without-loading-the-package"><meta property="og:description" content="This function follows the idea from this comment: https://stackoverflow.com/questions/38983179/do-call-a-function-in-r-without-loading-the-package"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/helpers.R" class="external-link"><code>R/helpers.R</code></a></small>
|
||||
<div class="d-none name"><code>getfun.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>This function follows the idea from this comment: https://stackoverflow.com/questions/38983179/do-call-a-function-in-r-without-loading-the-package</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">getfun</span><span class="op">(</span><span class="va">x</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
|
||||
<dd><p>function or function name</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>function or character vector</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">getfun</span><span class="op">(</span><span class="st">"stats::lm"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> function (formula, data, subset, weights, na.action, method = "qr", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> contrasts = NULL, offset, ...) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ret.x <- x</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ret.y <- y</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> cl <- match.call()</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- match.call(expand.dots = FALSE)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> m <- match(c("formula", "data", "subset", "weights", "na.action", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "offset"), names(mf), 0L)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- mf[c(1L, m)]</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf$drop.unused.levels <- TRUE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf[[1L]] <- quote(stats::model.frame)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- eval(mf, parent.frame())</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (method == "model.frame") </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> return(mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else if (method != "qr") </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> warning(gettextf("method = '%s' is not supported. Using 'qr'", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> method), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mt <- attr(mf, "terms")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y <- model.response(mf, "numeric")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> w <- as.vector(model.weights(mf))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(w) && !is.numeric(w)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop("'weights' must be a numeric vector")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> offset <- model.offset(mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mlm <- is.matrix(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ny <- if (mlm) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> nrow(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else length(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(offset)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!mlm) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> offset <- as.vector(offset)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (NROW(offset) != ny) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop(gettextf("number of offsets is %d, should equal %d (number of observations)", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> NROW(offset), ny), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (is.empty.model(mt)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> x <- NULL</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z <- list(coefficients = if (mlm) matrix(NA_real_, 0, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ncol(y)) else numeric(), residuals = y, fitted.values = 0 * </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w != </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0) else ny)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(offset)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$fitted.values <- offset</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$residuals <- y - offset</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> x <- model.matrix(mt, mf, contrasts)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z <- if (is.null(w)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> lm.fit(x, y, offset = offset, singular.ok = singular.ok, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ...)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ...)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> class(z) <- c(if (mlm) "mlm", "lm")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$na.action <- attr(mf, "na.action")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$offset <- offset</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$contrasts <- attr(x, "contrasts")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$xlevels <- .getXlevels(mt, mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$call <- cl</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$terms <- mt</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (model) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$model <- mf</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (ret.x) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$x <- x</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (ret.y) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$y <- y</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!qr) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$qr <- NULL</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <bytecode: 0x560d63b83df0></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <environment: namespace:stats></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
208
reference/index.html
Normal file
208
reference/index.html
Normal file
|
|
@ -0,0 +1,208 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Package index • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Package index"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-index">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Package index</h1>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="all-functions">All functions<a class="anchor" aria-label="anchor" href="#all-functions"></a></h2>
|
||||
|
||||
|
||||
|
||||
|
||||
</div><div class="section level2">
|
||||
|
||||
|
||||
|
||||
|
||||
<dl><dt>
|
||||
|
||||
<code><a href="argsstring2list.html">argsstring2list()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Convert string of arguments to list of arguments</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="baseline_table.html">baseline_table()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Print a flexible baseline characteristics table</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="custom_theme.html">custom_theme()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Custom theme based on unity</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="cut-variable.html">cut_variable_ui()</a></code> <code><a href="cut-variable.html">cut_variable_server()</a></code> <code><a href="cut-variable.html">modal_cut_variable()</a></code> <code><a href="cut-variable.html">winbox_cut_variable()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Module to Convert Numeric to Factor</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="cut.html">cut(<i><hms></i>)</a></code> <code><a href="cut.html">cut(<i><POSIXt></i>)</a></code> <code><a href="cut.html">cut(<i><POSIXct></i>)</a></code> <code><a href="cut.html">cut(<i><Date></i>)</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Title</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="default_format_arguments.html">default_format_arguments()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Defaults qmd formats</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="default_parsing.html">default_parsing()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Default data parsing</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="factorize.html">factorize()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Factorize variables in data.frame</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="file_export.html">file_export()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Title</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="format_writer.html">format_writer()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Merges list of named arguments for qmd header generation</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="getfun.html">getfun()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="index_embed.html">index_embed()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Split vector by an index and embed addition</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="is_any_class.html">is_any_class()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Test class</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="is_datetime.html">is_datetime()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Test is date/datetime/time</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="modify_qmd.html">modify_qmd()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Wrapper to modify quarto file to render specific formats</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="read_input.html">read_input()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Flexible file import based on extension</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="redcap_read_shiny_module.html">m_redcap_readUI()</a></code> <code><a href="redcap_read_shiny_module.html">m_redcap_readServer()</a></code> <code><a href="redcap_read_shiny_module.html">tdm_redcap_read</a></code> <code><a href="redcap_read_shiny_module.html">redcap_app()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Shiny module to browser and export REDCap data</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="regression_model.html">regression_model()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Create a regression model programatically</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="regression_model_uv.html">regression_model_uv()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Create a regression model programatically</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="regression_table.html">regression_table()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Create table of regression model</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="shiny_freesearcheR.html">shiny_freesearcheR()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Launch the freesearcheR tool locally</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="specify_qmd_format.html">specify_qmd_format()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Specify format arguments to include in qmd header/frontmatter</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="tbl_merge.html">tbl_merge()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="write_quarto.html">write_quarto()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Wrapper to save data in RDS, load into specified qmd and render</dd>
|
||||
</dl></div>
|
||||
</main></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
85
reference/index_embed.html
Normal file
85
reference/index_embed.html
Normal file
|
|
@ -0,0 +1,85 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Split vector by an index and embed addition — index_embed • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Split vector by an index and embed addition — index_embed"><meta name="description" content="Split vector by an index and embed addition"><meta property="og:description" content="Split vector by an index and embed addition"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Split vector by an index and embed addition</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/report.R" class="external-link"><code>R/report.R</code></a></small>
|
||||
<div class="d-none name"><code>index_embed.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Split vector by an index and embed addition</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">index_embed</span><span class="op">(</span><span class="va">data</span>, <span class="va">index</span>, add <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>vector</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-index">index<a class="anchor" aria-label="anchor" href="#arg-index"></a></dt>
|
||||
<dd><p>split index</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-add">add<a class="anchor" aria-label="anchor" href="#arg-add"></a></dt>
|
||||
<dd><p>addition</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>vector</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
90
reference/is_any_class.html
Normal file
90
reference/is_any_class.html
Normal file
|
|
@ -0,0 +1,90 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test class — is_any_class • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Test class — is_any_class"><meta name="description" content="Test class"><meta property="og:description" content="Test class"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Test class</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/cut-variable-dates.R" class="external-link"><code>R/cut-variable-dates.R</code></a></small>
|
||||
<div class="d-none name"><code>is_any_class.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Test class</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">is_any_class</span><span class="op">(</span><span class="va">data</span>, <span class="va">class.vec</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-class-vec">class.vec<a class="anchor" aria-label="anchor" href="#arg-class-vec"></a></dt>
|
||||
<dd><p>vector of class names to test</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>factor</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">vapply</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html" class="external-link">redcapcast_data</a></span>, \<span class="op">(</span><span class="va">.x</span><span class="op">)</span><span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">is_any_class</span><span class="op">(</span><span class="va">.x</span>, <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"hms"</span>, <span class="st">"Date"</span>, <span class="st">"POSIXct"</span>, <span class="st">"POSIXt"</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span>, <span class="fu"><a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a></span><span class="op">(</span><span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span> <span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
110
reference/is_datetime.html
Normal file
110
reference/is_datetime.html
Normal file
|
|
@ -0,0 +1,110 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test is date/datetime/time — is_datetime • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Test is date/datetime/time — is_datetime"><meta name="description" content="Test is date/datetime/time"><meta property="og:description" content="Test is date/datetime/time"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Test is date/datetime/time</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/cut-variable-dates.R" class="external-link"><code>R/cut-variable-dates.R</code></a></small>
|
||||
<div class="d-none name"><code>is_datetime.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Test is date/datetime/time</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">is_datetime</span><span class="op">(</span><span class="va">data</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>factor</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">vapply</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html" class="external-link">redcapcast_data</a></span>, <span class="va">is_datetime</span>, <span class="fu"><a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a></span><span class="op">(</span><span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> record_id redcap_event_name </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> redcap_repeat_instrument redcap_repeat_instance </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> cpr inclusion </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> inclusion_time dob </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> TRUE TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> age age_integer </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> sex cohabitation </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> hypertension diabetes </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> region baseline_data_start_complete </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mrs_assessed mrs_date </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mrs_score mrs_complete </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> con_mrs con_calc </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> consensus_complete event_datetime </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> event_age event_type </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> new_event_complete </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> FALSE </span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
8
reference/m_redcap_readServer.html
Normal file
8
reference/m_redcap_readServer.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
8
reference/modal_cut_variable.html
Normal file
8
reference/modal_cut_variable.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
81
reference/modify_qmd.html
Normal file
81
reference/modify_qmd.html
Normal file
|
|
@ -0,0 +1,81 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to modify quarto file to render specific formats — modify_qmd • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Wrapper to modify quarto file to render specific formats — modify_qmd"><meta name="description" content="Wrapper to modify quarto file to render specific formats"><meta property="og:description" content="Wrapper to modify quarto file to render specific formats"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Wrapper to modify quarto file to render specific formats</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/report.R" class="external-link"><code>R/report.R</code></a></small>
|
||||
<div class="d-none name"><code>modify_qmd.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Wrapper to modify quarto file to render specific formats</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">modify_qmd</span><span class="op">(</span><span class="va">file</span>, <span class="va">format</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-file">file<a class="anchor" aria-label="anchor" href="#arg-file"></a></dt>
|
||||
<dd><p>filename</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-format">format<a class="anchor" aria-label="anchor" href="#arg-format"></a></dt>
|
||||
<dd><p>desired output</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>none</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
107
reference/read_input.html
Normal file
107
reference/read_input.html
Normal file
|
|
@ -0,0 +1,107 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Flexible file import based on extension — read_input • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Flexible file import based on extension — read_input"><meta name="description" content="Flexible file import based on extension"><meta property="og:description" content="Flexible file import based on extension"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Flexible file import based on extension</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/helpers.R" class="external-link"><code>R/helpers.R</code></a></small>
|
||||
<div class="d-none name"><code>read_input.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Flexible file import based on extension</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">read_input</span><span class="op">(</span><span class="va">file</span>, consider.na <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"NA"</span>, <span class="st">"\"\""</span>, <span class="st">""</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-file">file<a class="anchor" aria-label="anchor" href="#arg-file"></a></dt>
|
||||
<dd><p>file name</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-consider-na">consider.na<a class="anchor" aria-label="anchor" href="#arg-consider-na"></a></dt>
|
||||
<dd><p>character vector of strings to consider as NAs</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>tibble</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">read_input</span><span class="op">(</span><span class="st">"https://raw.githubusercontent.com/agdamsbo/cognitive.index.lookup/main/data/sample.csv"</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> <span style="font-weight: bold;">Rows: </span><span style="color: #0000BB;">28</span> <span style="font-weight: bold;">Columns: </span><span style="color: #0000BB;">8</span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> <span style="color: #00BBBB;">──</span> <span style="font-weight: bold;">Column specification</span> <span style="color: #00BBBB;">────────────────────────────────────────────────────────</span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> <span style="font-weight: bold;">Delimiter:</span> ","</span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> <span style="color: #00BB00;">dbl</span> (8): id, ab, age, imm, vis, ver, att, del</span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Use `spec()` to retrieve the full column specification for this data.</span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Specify the column types or set `show_col_types = FALSE` to quiet this message.</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 28 × 8</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> id ab age imm vis ver att del</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 1 1 74 38 35 30 29 35</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 1 2 69 36 36 21 27 37</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2 1 63 32 31 26 34 38</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2 2 64 37 34 26 36 46</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 3 1 69 39 33 31 47 29</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 3 2 70 40 36 31 46 25</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 4 1 79 44 37 20 37 36</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 4 2 81 35 36 31 37 40</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 5 1 77 35 26 17 20 36</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 5 2 80 29 34 18 23 36</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 18 more rows</span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
8
reference/redcap_app.html
Normal file
8
reference/redcap_app.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
109
reference/redcap_read_shiny_module.html
Normal file
109
reference/redcap_read_shiny_module.html
Normal file
|
|
@ -0,0 +1,109 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Shiny module to browser and export REDCap data — m_redcap_readUI • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Shiny module to browser and export REDCap data — m_redcap_readUI"><meta name="description" content="Shiny module to browser and export REDCap data
|
||||
REDCap import teal data module
|
||||
Test app for the redcap_read_shiny_module"><meta property="og:description" content="Shiny module to browser and export REDCap data
|
||||
REDCap import teal data module
|
||||
Test app for the redcap_read_shiny_module"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Shiny module to browser and export REDCap data</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/redcap_read_shiny_module.R" class="external-link"><code>R/redcap_read_shiny_module.R</code></a></small>
|
||||
<div class="d-none name"><code>redcap_read_shiny_module.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Shiny module to browser and export REDCap data</p>
|
||||
<p>REDCap import teal data module</p>
|
||||
<p>Test app for the redcap_read_shiny_module</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">m_redcap_readUI</span><span class="op">(</span><span class="va">id</span>, include_title <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
|
||||
<span></span>
|
||||
<span><span class="fu">m_redcap_readServer</span><span class="op">(</span><span class="va">id</span>, output.format <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"df"</span>, <span class="st">"teal"</span>, <span class="st">"list"</span><span class="op">)</span><span class="op">)</span></span>
|
||||
<span></span>
|
||||
<span><span class="va">tdm_redcap_read</span></span>
|
||||
<span></span>
|
||||
<span><span class="fu">redcap_app</span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="format">Format<a class="anchor" aria-label="anchor" href="#format"></a></h2>
|
||||
<p>An object of class <code>teal_data_module</code> of length 2.</p>
|
||||
</div>
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-id">id<a class="anchor" aria-label="anchor" href="#arg-id"></a></dt>
|
||||
<dd><p>Namespace id</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-include-title">include_title<a class="anchor" aria-label="anchor" href="#arg-include-title"></a></dt>
|
||||
<dd><p>logical to include title</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-output-format">output.format<a class="anchor" aria-label="anchor" href="#arg-output-format"></a></dt>
|
||||
<dd><p>data.frame ("df") or teal data object ("teal")</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>shiny ui element</p>
|
||||
<p>shiny server module</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">redcap_app</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span> <span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
846
reference/regression_model.html
Normal file
846
reference/regression_model.html
Normal file
|
|
@ -0,0 +1,846 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a regression model programatically — regression_model • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Create a regression model programatically — regression_model"><meta name="description" content="Create a regression model programatically"><meta property="og:description" content="Create a regression model programatically"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Create a regression model programatically</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/regression_model.R" class="external-link"><code>R/regression_model.R</code></a></small>
|
||||
<div class="d-none name"><code>regression_model.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Create a regression model programatically</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">regression_model</span><span class="op">(</span></span>
|
||||
<span> <span class="va">data</span>,</span>
|
||||
<span> <span class="va">outcome.str</span>,</span>
|
||||
<span> auto.mode <span class="op">=</span> <span class="cn">TRUE</span>,</span>
|
||||
<span> formula.str <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> args.list <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> fun <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> vars <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> <span class="va">...</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data set</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-outcome-str">outcome.str<a class="anchor" aria-label="anchor" href="#arg-outcome-str"></a></dt>
|
||||
<dd><p>Name of outcome variable. Character vector.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-auto-mode">auto.mode<a class="anchor" aria-label="anchor" href="#arg-auto-mode"></a></dt>
|
||||
<dd><p>Make assumptions on function dependent on outcome data format. Overwrites other arguments.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-formula-str">formula.str<a class="anchor" aria-label="anchor" href="#arg-formula-str"></a></dt>
|
||||
<dd><p>Formula as string. Passed through 'glue::glue'. If given, 'outcome.str' and 'vars' are ignored. Optional.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-args-list">args.list<a class="anchor" aria-label="anchor" href="#arg-args-list"></a></dt>
|
||||
<dd><p>List of arguments passed to 'fun' with 'do.call'.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-fun">fun<a class="anchor" aria-label="anchor" href="#arg-fun"></a></dt>
|
||||
<dd><p>Name of function as character vector or function to use for model creation.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-vars">vars<a class="anchor" aria-label="anchor" href="#arg-vars"></a></dt>
|
||||
<dd><p>character vector of variables to include</p></dd>
|
||||
|
||||
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>ignored for now</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>object of standard class for fun</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_model</span><span class="op">(</span>outcome.str <span class="op">=</span> <span class="st">"age"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Call:</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> (function (formula, data, subset, weights, na.action, method = "qr", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> contrasts = NULL, offset, ...) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ret.x <- x</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ret.y <- y</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> cl <- match.call()</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- match.call(expand.dots = FALSE)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> m <- match(c("formula", "data", "subset", "weights", "na.action", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "offset"), names(mf), 0L)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- mf[c(1L, m)]</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf$drop.unused.levels <- TRUE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf[[1L]] <- quote(stats::model.frame)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- eval(mf, parent.frame())</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (method == "model.frame") </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> return(mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else if (method != "qr") </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> warning(gettextf("method = '%s' is not supported. Using 'qr'", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> method), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mt <- attr(mf, "terms")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y <- model.response(mf, "numeric")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> w <- as.vector(model.weights(mf))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(w) && !is.numeric(w)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop("'weights' must be a numeric vector")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> offset <- model.offset(mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mlm <- is.matrix(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ny <- if (mlm) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> nrow(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else length(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(offset)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!mlm) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> offset <- as.vector(offset)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (NROW(offset) != ny) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop(gettextf("number of offsets is %d, should equal %d (number of observations)", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> NROW(offset), ny), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (is.empty.model(mt)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> x <- NULL</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z <- list(coefficients = if (mlm) matrix(NA_real_, 0, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ncol(y)) else numeric(), residuals = y, fitted.values = 0 * </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w != </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0) else ny)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(offset)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$fitted.values <- offset</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$residuals <- y - offset</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> x <- model.matrix(mt, mf, contrasts)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z <- if (is.null(w)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> lm.fit(x, y, offset = offset, singular.ok = singular.ok, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ...)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ...)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> class(z) <- c(if (mlm) "mlm", "lm")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$na.action <- attr(mf, "na.action")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$offset <- offset</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$contrasts <- attr(x, "contrasts")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$xlevels <- .getXlevels(mt, mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$call <- cl</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$terms <- mt</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (model) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$model <- mf</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (ret.x) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$x <- x</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (ret.y) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$y <- y</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!qr) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$qr <- NULL</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> })(formula = age ~ ., data = structure(list(trt = structure(c(1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c("Drug A", "Drug B"), class = "factor", label = "Chemotherapy Treatment"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = "Age"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> NA, 0.136, 0.439, 1.148), label = "Marker Level (ng/mL)"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c("T1", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "T2", "T3", "T4"), class = "factor", label = "T Stage"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c("I", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "II", "III"), class = "factor", label = "Grade"), response = structure(c(0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 0L, NA, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, NA, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, NA, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 1L, 0L, NA, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, NA, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 0L, 0L), label = "Tumor Response"), death = structure(c(0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 1L, 0L), label = "Patient Died"), ttdeath = structure(c(24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = "Months to Death/Censor")), class = c("tbl_df", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "tbl", "data.frame"), row.names = c(NA, -200L)))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Coefficients:</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> (Intercept) trtDrug B marker stageT2 stageT3 stageT4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 45.9247 -0.4052 -0.1435 2.0519 2.4437 -3.1573 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> gradeII gradeIII response death ttdeath </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.1750 1.6855 4.9885 3.0775 -0.1394 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_model</span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> outcome.str <span class="op">=</span> <span class="st">"age"</span>,</span></span>
|
||||
<span class="r-in"><span> auto.mode <span class="op">=</span> <span class="cn">FALSE</span>,</span></span>
|
||||
<span class="r-in"><span> fun <span class="op">=</span> <span class="st">"stats::lm"</span>,</span></span>
|
||||
<span class="r-in"><span> formula.str <span class="op">=</span> <span class="st">"{outcome.str}~."</span>,</span></span>
|
||||
<span class="r-in"><span> args.list <span class="op">=</span> <span class="cn">NULL</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Call:</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> (function (formula, data, subset, weights, na.action, method = "qr", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> contrasts = NULL, offset, ...) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ret.x <- x</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ret.y <- y</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> cl <- match.call()</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- match.call(expand.dots = FALSE)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> m <- match(c("formula", "data", "subset", "weights", "na.action", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "offset"), names(mf), 0L)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- mf[c(1L, m)]</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf$drop.unused.levels <- TRUE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf[[1L]] <- quote(stats::model.frame)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- eval(mf, parent.frame())</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (method == "model.frame") </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> return(mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else if (method != "qr") </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> warning(gettextf("method = '%s' is not supported. Using 'qr'", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> method), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mt <- attr(mf, "terms")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y <- model.response(mf, "numeric")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> w <- as.vector(model.weights(mf))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(w) && !is.numeric(w)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop("'weights' must be a numeric vector")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> offset <- model.offset(mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mlm <- is.matrix(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ny <- if (mlm) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> nrow(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else length(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(offset)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!mlm) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> offset <- as.vector(offset)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (NROW(offset) != ny) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop(gettextf("number of offsets is %d, should equal %d (number of observations)", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> NROW(offset), ny), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (is.empty.model(mt)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> x <- NULL</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z <- list(coefficients = if (mlm) matrix(NA_real_, 0, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ncol(y)) else numeric(), residuals = y, fitted.values = 0 * </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w != </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0) else ny)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(offset)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$fitted.values <- offset</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$residuals <- y - offset</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> x <- model.matrix(mt, mf, contrasts)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z <- if (is.null(w)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> lm.fit(x, y, offset = offset, singular.ok = singular.ok, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ...)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ...)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> class(z) <- c(if (mlm) "mlm", "lm")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$na.action <- attr(mf, "na.action")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$offset <- offset</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$contrasts <- attr(x, "contrasts")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$xlevels <- .getXlevels(mt, mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$call <- cl</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$terms <- mt</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (model) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$model <- mf</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (ret.x) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$x <- x</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (ret.y) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$y <- y</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!qr) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z$qr <- NULL</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> z</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> })(formula = age ~ ., data = structure(list(trt = structure(c(1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c("Drug A", "Drug B"), class = "factor", label = "Chemotherapy Treatment"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = "Age"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> NA, 0.136, 0.439, 1.148), label = "Marker Level (ng/mL)"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c("T1", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "T2", "T3", "T4"), class = "factor", label = "T Stage"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c("I", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "II", "III"), class = "factor", label = "Grade"), response = structure(c(0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 0L, NA, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, NA, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, NA, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 1L, 0L, NA, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, NA, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 0L, 0L), label = "Tumor Response"), death = structure(c(0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 1L, 0L), label = "Patient Died"), ttdeath = structure(c(24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = "Months to Death/Censor")), class = c("tbl_df", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "tbl", "data.frame"), row.names = c(NA, -200L)))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Coefficients:</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> (Intercept) trtDrug B marker stageT2 stageT3 stageT4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 45.9247 -0.4052 -0.1435 2.0519 2.4437 -3.1573 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> gradeII gradeIII response death ttdeath </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.1750 1.6855 4.9885 3.0775 -0.1394 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span> <span class="fu">regression_model</span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> outcome.str <span class="op">=</span> <span class="st">"trt"</span>,</span></span>
|
||||
<span class="r-in"><span> auto.mode <span class="op">=</span> <span class="cn">FALSE</span>,</span></span>
|
||||
<span class="r-in"><span> fun <span class="op">=</span> <span class="st">"stats::glm"</span>,</span></span>
|
||||
<span class="r-in"><span> args.list <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>family <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/stats/family.html" class="external-link">binomial</a></span><span class="op">(</span>link <span class="op">=</span> <span class="st">"logit"</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Call: (function (formula, family = gaussian, data, weights, subset, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> na.action, start = NULL, etastart, mustart, offset, control = list(...), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> model = TRUE, method = "glm.fit", x = FALSE, y = TRUE, singular.ok = TRUE, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> contrasts = NULL, ...) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> cal <- match.call()</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (is.character(family)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> family <- get(family, mode = "function", envir = parent.frame())</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (is.function(family)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> family <- family()</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (is.null(family$family)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> print(family)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop("'family' not recognized")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (missing(data)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> data <- environment(formula)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- match.call(expand.dots = FALSE)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> m <- match(c("formula", "data", "subset", "weights", "na.action", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "etastart", "mustart", "offset"), names(mf), 0L)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- mf[c(1L, m)]</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf$drop.unused.levels <- TRUE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf[[1L]] <- quote(stats::model.frame)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf <- eval(mf, parent.frame())</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (identical(method, "model.frame")) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> return(mf)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.character(method) && !is.function(method)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop("invalid 'method' argument")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (identical(method, "glm.fit")) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> control <- do.call("glm.control", control)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mt <- attr(mf, "terms")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Y <- model.response(mf, "any")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (length(dim(Y)) == 1L) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> nm <- rownames(Y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> dim(Y) <- NULL</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(nm)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> names(Y) <- nm</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> X <- if (!is.empty.model(mt)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> model.matrix(mt, mf, contrasts)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else matrix(, NROW(Y), 0L)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> weights <- as.vector(model.weights(mf))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(weights) && !is.numeric(weights)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop("'weights' must be a numeric vector")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(weights) && any(weights < 0)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop("negative weights not allowed")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> offset <- as.vector(model.offset(mf))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(offset)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (length(offset) != NROW(Y)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop(gettextf("number of offsets is %d should equal %d (number of observations)", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> length(offset), NROW(Y)), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mustart <- model.extract(mf, "mustart")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> etastart <- model.extract(mf, "etastart")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> fit <- eval(call(if (is.function(method)) "method" else method, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> x = X, y = Y, weights = weights, start = start, etastart = etastart, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mustart = mustart, offset = offset, family = family, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> control = control, intercept = attr(mt, "intercept") > </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, singular.ok = singular.ok))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (length(offset) && attr(mt, "intercept") > 0L) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> fit2 <- eval(call(if (is.function(method)) "method" else method, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> x = X[, "(Intercept)", drop = FALSE], y = Y, mustart = fit$fitted.values, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> weights = weights, offset = offset, family = family, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> control = control, intercept = TRUE))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!fit2$converged) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> warning("fitting to calculate the null deviance did not converge -- increase 'maxit'?")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> fit$null.deviance <- fit2$deviance</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (model) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> fit$model <- mf</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> fit$na.action <- attr(mf, "na.action")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (x) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> fit$x <- X</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!y) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> fit$y <- NULL</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> structure(c(fit, list(call = cal, formula = formula, terms = mt, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> data = data, offset = offset, control = control, method = method, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> contrasts = attr(X, "contrasts"), xlevels = .getXlevels(mt, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mf))), class = c(fit$class, c("glm", "lm")))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> })(formula = trt ~ ., family = structure(list(family = "binomial", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> link = "logit", linkfun = function (mu) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> .Call(C_logit_link, mu), linkinv = function (eta) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> .Call(C_logit_linkinv, eta), variance = function (mu) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mu * (1 - mu), dev.resids = function (y, mu, wt) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> .Call(C_binomial_dev_resids, y, mu, wt), aic = function (y, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> n, mu, wt, dev) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> m <- if (any(n > 1)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> n</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else wt</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> -2 * sum(ifelse(m > 0, (wt/m), 0) * dbinom(round(m * </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y), round(m), mu, log = TRUE))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }, mu.eta = function (eta) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> .Call(C_logit_mu_eta, eta), initialize = {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (NCOL(y) == 1) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (is.factor(y)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y <- y != levels(y)[1L]</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> n <- rep.int(1, nobs)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y[weights == 0] <- 0</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (any(y < 0 | y > 1)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop("y values must be 0 <= y <= 1")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mustart <- (weights * y + 0.5)/(weights + 1)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> m <- weights * y</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if ("binomial" == "binomial" && any(abs(m - round(m)) > </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.001)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> warning(gettextf("non-integer #successes in a %s glm!", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "binomial"), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else if (NCOL(y) == 2) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if ("binomial" == "binomial" && any(abs(y - round(y)) > </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.001)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> warning(gettextf("non-integer counts in a %s glm!", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "binomial"), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> n <- (y1 <- y[, 1L]) + y[, 2L]</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y <- y1/n</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (any(n0 <- n == 0)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y[n0] <- 0</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> weights <- weights * n</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mustart <- (n * y + 0.5)/(n + 1)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else stop(gettextf("for the '%s' family, y must be a vector of 0 and 1's\nor a 2 column matrix where col 1 is no. successes and col 2 is no. failures", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "binomial"), domain = NA)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }, validmu = function (mu) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> all(is.finite(mu)) && all(mu > 0 & mu < 1), valideta = function (eta) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> TRUE, simulate = function (object, nsim) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ftd <- fitted(object)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> n <- length(ftd)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ntot <- n * nsim</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> wts <- object$prior.weights</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (any(wts%%1 != 0)) </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stop("cannot simulate from non-integer prior.weights")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (!is.null(m <- object$model)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> y <- model.response(m)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> if (is.factor(y)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> yy <- factor(1 + rbinom(ntot, size = 1, prob = ftd), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> labels = levels(y))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> split(yy, rep(seq_len(nsim), each = n))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else if (is.matrix(y) && ncol(y) == 2) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> yy <- vector("list", nsim)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> for (i in seq_len(nsim)) {</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Y <- rbinom(n, size = wts, prob = ftd)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> YY <- cbind(Y, wts - Y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> colnames(YY) <- colnames(y)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> yy[[i]] <- YY</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> yy</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else rbinom(ntot, size = wts, prob = ftd)/wts</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> else rbinom(ntot, size = wts, prob = ftd)/wts</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> }, dispersion = 1), class = "family"), data = structure(list(</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> trt = structure(c(1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c("Drug A", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "Drug B"), class = "factor", label = "Chemotherapy Treatment"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = "Age"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> NA, 0.136, 0.439, 1.148), label = "Marker Level (ng/mL)"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c("T1", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "T2", "T3", "T4"), class = "factor", label = "T Stage"), </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c("I", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "II", "III"), class = "factor", label = "Grade"), response = structure(c(0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 0L, NA, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, NA, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, NA, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 1L, 0L, NA, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, NA, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 0L, 0L), label = "Tumor Response"), death = structure(c(0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 0L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 0L, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1L, 0L, 1L, 0L), label = "Patient Died"), ttdeath = structure(c(24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44, </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = "Months to Death/Censor")), class = c("tbl_df", </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "tbl", "data.frame"), row.names = c(NA, -200L)))</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Coefficients:</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> (Intercept) age marker stageT2 stageT3 stageT4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1.652845 -0.002014 -0.259849 0.404341 0.117402 -0.002102 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> gradeII gradeIII response death ttdeath </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> -0.037012 0.022890 0.498952 -0.003916 -0.076073 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Degrees of Freedom: 172 Total (i.e. Null); 162 Residual</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> (27 observations deleted due to missingness)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Null Deviance: 239.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Residual Deviance: 230.9 AIC: 252.9</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
123
reference/regression_model_uv.html
Normal file
123
reference/regression_model_uv.html
Normal file
|
|
@ -0,0 +1,123 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a regression model programatically — regression_model_uv • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Create a regression model programatically — regression_model_uv"><meta name="description" content="Create a regression model programatically"><meta property="og:description" content="Create a regression model programatically"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Create a regression model programatically</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/regression_model.R" class="external-link"><code>R/regression_model.R</code></a></small>
|
||||
<div class="d-none name"><code>regression_model_uv.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Create a regression model programatically</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">regression_model_uv</span><span class="op">(</span></span>
|
||||
<span> <span class="va">data</span>,</span>
|
||||
<span> <span class="va">outcome.str</span>,</span>
|
||||
<span> args.list <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> fun <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> vars <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> <span class="va">...</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data set</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-outcome-str">outcome.str<a class="anchor" aria-label="anchor" href="#arg-outcome-str"></a></dt>
|
||||
<dd><p>Name of outcome variable. Character vector.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-args-list">args.list<a class="anchor" aria-label="anchor" href="#arg-args-list"></a></dt>
|
||||
<dd><p>List of arguments passed to 'fun' with 'do.call'.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-fun">fun<a class="anchor" aria-label="anchor" href="#arg-fun"></a></dt>
|
||||
<dd><p>Name of function as character vector or function to use for model creation.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-vars">vars<a class="anchor" aria-label="anchor" href="#arg-vars"></a></dt>
|
||||
<dd><p>character vector of variables to include</p></dd>
|
||||
|
||||
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>ignored for now</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>object of standard class for fun</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_model_uv</span><span class="op">(</span>outcome.str <span class="op">=</span> <span class="st">"age"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_model_uv</span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> outcome.str <span class="op">=</span> <span class="st">"age"</span>,</span></span>
|
||||
<span class="r-in"><span> fun <span class="op">=</span> <span class="st">"stats::lm"</span>,</span></span>
|
||||
<span class="r-in"><span> args.list <span class="op">=</span> <span class="cn">NULL</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span> <span class="fu">regression_model_uv</span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> outcome.str <span class="op">=</span> <span class="st">"trt"</span>,</span></span>
|
||||
<span class="r-in"><span> fun <span class="op">=</span> <span class="st">"stats::glm"</span>,</span></span>
|
||||
<span class="r-in"><span> args.list <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>family <span class="op">=</span> <span class="fu">stats</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/r/stats/family.html" class="external-link">binomial</a></span><span class="op">(</span>link <span class="op">=</span> <span class="st">"logit"</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span> <span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
177
reference/regression_table.html
Normal file
177
reference/regression_table.html
Normal file
|
|
@ -0,0 +1,177 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create table of regression model — regression_table • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Create table of regression model — regression_table"><meta name="description" content="Create table of regression model"><meta property="og:description" content="Create table of regression model"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Create table of regression model</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/regression_table.R" class="external-link"><code>R/regression_table.R</code></a></small>
|
||||
<div class="d-none name"><code>regression_table.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Create table of regression model</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">regression_table</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
|
||||
<dd><p>regression model</p></dd>
|
||||
|
||||
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>passed to methods</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-args-list">args.list<a class="anchor" aria-label="anchor" href="#arg-args-list"></a></dt>
|
||||
<dd><p>list of arguments passed to 'fun'.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-fun">fun<a class="anchor" aria-label="anchor" href="#arg-fun"></a></dt>
|
||||
<dd><p>function to use for table creation. Default is "gtsummary::tbl_regression".</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>object of standard class for fun</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="regression_model.html">regression_model</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> outcome.str <span class="op">=</span> <span class="st">"stage"</span>,</span></span>
|
||||
<span class="r-in"><span> fun <span class="op">=</span> <span class="st">"MASS::polr"</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_table</span><span class="op">(</span>args.list <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="st">"exponentiate"</span> <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="regression_model.html">regression_model</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> outcome.str <span class="op">=</span> <span class="st">"age"</span>,</span></span>
|
||||
<span class="r-in"><span> fun <span class="op">=</span> <span class="st">"stats::lm"</span>,</span></span>
|
||||
<span class="r-in"><span> formula.str <span class="op">=</span> <span class="st">"{outcome.str}~."</span>,</span></span>
|
||||
<span class="r-in"><span> args.list <span class="op">=</span> <span class="cn">NULL</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_table</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="regression_model.html">regression_model</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> outcome.str <span class="op">=</span> <span class="st">"trt"</span>,</span></span>
|
||||
<span class="r-in"><span> fun <span class="op">=</span> <span class="st">"stats::glm"</span>,</span></span>
|
||||
<span class="r-in"><span> args.list <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>family <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/stats/family.html" class="external-link">binomial</a></span><span class="op">(</span>link <span class="op">=</span> <span class="st">"logit"</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_table</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="regression_model_uv.html">regression_model_uv</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> outcome.str <span class="op">=</span> <span class="st">"trt"</span>,</span></span>
|
||||
<span class="r-in"><span> fun <span class="op">=</span> <span class="st">"stats::glm"</span>,</span></span>
|
||||
<span class="r-in"><span> args.list <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>family <span class="op">=</span> <span class="fu">stats</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/r/stats/family.html" class="external-link">binomial</a></span><span class="op">(</span>link <span class="op">=</span> <span class="st">"logit"</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_table</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="regression_model_uv.html">regression_model_uv</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> outcome.str <span class="op">=</span> <span class="st">"stage"</span>,</span></span>
|
||||
<span class="r-in"><span> args.list <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>family <span class="op">=</span> <span class="fu">stats</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/r/stats/family.html" class="external-link">binomial</a></span><span class="op">(</span>link <span class="op">=</span> <span class="st">"logit"</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_table</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> <span class="st">"Univariable"</span> <span class="op">=</span> <span class="va">regression_model_uv</span>,</span></span>
|
||||
<span class="r-in"><span> <span class="st">"Multivariable"</span> <span class="op">=</span> <span class="va">regression_model</span></span></span>
|
||||
<span class="r-in"><span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">lapply</a></span><span class="op">(</span>\<span class="op">(</span><span class="va">.fun</span><span class="op">)</span><span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/do.call.html" class="external-link">do.call</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> <span class="va">.fun</span>,</span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>data <span class="op">=</span> <span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span><span class="op">)</span>,</span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>outcome.str <span class="op">=</span> <span class="st">"stage"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">}</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/map.html" class="external-link">map</a></span><span class="op">(</span><span class="va">regression_table</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="tbl_merge.html">tbl_merge</a></span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">}</span> <span class="co"># }</span></span></span>
|
||||
<span class="r-in"><span><span class="va">regression_table</span> <span class="op"><-</span> <span class="kw">function</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span> <span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="kw"><a href="https://rdrr.io/r/base/UseMethod.html" class="external-link">UseMethod</a></span><span class="op">(</span><span class="st">"regression_table"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co">#' @rdname regression_table</span></span></span>
|
||||
<span class="r-in"><span><span class="co">#' @export</span></span></span>
|
||||
<span class="r-in"><span><span class="va">regression_table.list</span> <span class="op"><-</span> <span class="kw">function</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span> <span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="va">x</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/map.html" class="external-link">map</a></span><span class="op">(</span>\<span class="op">(</span><span class="va">.m</span><span class="op">)</span><span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">regression_table</span><span class="op">(</span>x <span class="op">=</span> <span class="va">.m</span>, <span class="va">...</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">gtsummary</span><span class="fu">::</span><span class="fu"><a href="https://www.danieldsjoberg.com/gtsummary/reference/add_n.html" class="external-link">add_n</a></span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">}</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">gtsummary</span><span class="fu">::</span><span class="fu"><a href="https://www.danieldsjoberg.com/gtsummary/reference/tbl_stack.html" class="external-link">tbl_stack</a></span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co">#' @rdname regression_table</span></span></span>
|
||||
<span class="r-in"><span><span class="co">#' @export</span></span></span>
|
||||
<span class="r-in"><span><span class="va">regression_table.default</span> <span class="op"><-</span> <span class="kw">function</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span>, <span class="va">args.list</span> <span class="op">=</span> <span class="cn">NULL</span>, <span class="va">fun</span> <span class="op">=</span> <span class="st">"gtsummary::tbl_regression"</span><span class="op">)</span> <span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="co"># Stripping custom class</span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="op">!=</span> <span class="st">"freesearcher_model"</span><span class="op">]</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span> <span class="kw">if</span> <span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/any.html" class="external-link">any</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span><span class="op">)</span> <span class="op">!=</span> <span class="fl">1</span>, <span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="op">!=</span> <span class="st">"lm"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="kw">if</span> <span class="op">(</span><span class="op">!</span><span class="st">"exponentiate"</span> <span class="op"><a href="https://rdrr.io/r/base/match.html" class="external-link">%in%</a></span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">args.list</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="va">args.list</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="va">args.list</span>, <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>exponentiate <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">}</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">}</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span> <span class="va">out</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/do.call.html" class="external-link">do.call</a></span><span class="op">(</span><span class="fu"><a href="getfun.html">getfun</a></span><span class="op">(</span><span class="va">fun</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>x <span class="op">=</span> <span class="va">x</span><span class="op">)</span>, <span class="va">args.list</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="va">out</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">gtsummary</span><span class="fu">::</span><span class="fu"><a href="https://www.danieldsjoberg.com/gtsummary/reference/add_glance.html" class="external-link">add_glance_source_note</a></span><span class="op">(</span><span class="op">)</span> <span class="co"># |></span></span></span>
|
||||
<span class="r-in"><span> <span class="co"># gtsummary::bold_p()</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
85
reference/shiny_freesearcheR.html
Normal file
85
reference/shiny_freesearcheR.html
Normal file
|
|
@ -0,0 +1,85 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Launch the freesearcheR tool locally — shiny_freesearcheR • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Launch the freesearcheR tool locally — shiny_freesearcheR"><meta name="description" content="All data.frames in the global environment will be accessible through the app."><meta property="og:description" content="All data.frames in the global environment will be accessible through the app."></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Launch the freesearcheR tool locally</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/shiny_freesearcheR.R" class="external-link"><code>R/shiny_freesearcheR.R</code></a></small>
|
||||
<div class="d-none name"><code>shiny_freesearcheR.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>All data.frames in the global environment will be accessible through the app.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">shiny_freesearcheR</span><span class="op">(</span><span class="va">...</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>arguments passed on to <code><a href="https://rdrr.io/pkg/shiny/man/runApp.html" class="external-link">shiny::runApp()</a></code></p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>shiny app</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">mtcars</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">shiny_freesearcheR</span><span class="op">(</span>launch.browser <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span> <span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
81
reference/specify_qmd_format.html
Normal file
81
reference/specify_qmd_format.html
Normal file
|
|
@ -0,0 +1,81 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Specify format arguments to include in qmd header/frontmatter — specify_qmd_format • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Specify format arguments to include in qmd header/frontmatter — specify_qmd_format"><meta name="description" content="Specify format arguments to include in qmd header/frontmatter"><meta property="og:description" content="Specify format arguments to include in qmd header/frontmatter"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Specify format arguments to include in qmd header/frontmatter</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/report.R" class="external-link"><code>R/report.R</code></a></small>
|
||||
<div class="d-none name"><code>specify_qmd_format.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Specify format arguments to include in qmd header/frontmatter</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">specify_qmd_format</span><span class="op">(</span><span class="va">data</span>, fileformat <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"docx"</span>, <span class="st">"odt"</span>, <span class="st">"pdf"</span>, <span class="st">"all"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>vector</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-fileformat">fileformat<a class="anchor" aria-label="anchor" href="#arg-fileformat"></a></dt>
|
||||
<dd><p>format to include</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>vector</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
80
reference/tbl_merge.html
Normal file
80
reference/tbl_merge.html
Normal file
|
|
@ -0,0 +1,80 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge"><meta name="description" content="A substitue to gtsummary::tbl_merge, that will use list names for the tab
|
||||
spanner names."><meta property="og:description" content="A substitue to gtsummary::tbl_merge, that will use list names for the tab
|
||||
spanner names."></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/regression_table.R" class="external-link"><code>R/regression_table.R</code></a></small>
|
||||
<div class="d-none name"><code>tbl_merge.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>A substitue to gtsummary::tbl_merge, that will use list names for the tab
|
||||
spanner names.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">tbl_merge</span><span class="op">(</span><span class="va">data</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>gtsummary list object</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>gt summary list object</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
8
reference/tdm_redcap_read.html
Normal file
8
reference/tdm_redcap_read.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
8
reference/winbox_cut_variable.html
Normal file
8
reference/winbox_cut_variable.html
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
<html>
|
||||
<head>
|
||||
<meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html" />
|
||||
<meta name="robots" content="noindex">
|
||||
<link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html">
|
||||
</head>
|
||||
</html>
|
||||
|
||||
81
reference/write_quarto.html
Normal file
81
reference/write_quarto.html
Normal file
|
|
@ -0,0 +1,81 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to save data in RDS, load into specified qmd and render — write_quarto • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Wrapper to save data in RDS, load into specified qmd and render — write_quarto"><meta name="description" content="Wrapper to save data in RDS, load into specified qmd and render"><meta property="og:description" content="Wrapper to save data in RDS, load into specified qmd and render"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>Wrapper to save data in RDS, load into specified qmd and render</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/helpers.R" class="external-link"><code>R/helpers.R</code></a></small>
|
||||
<div class="d-none name"><code>write_quarto.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Wrapper to save data in RDS, load into specified qmd and render</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">write_quarto</span><span class="op">(</span><span class="va">data</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>list to pass to qmd</p></dd>
|
||||
|
||||
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>Passed to <code><a href="https://quarto-dev.github.io/quarto-r/reference/quarto_render.html" class="external-link">quarto::quarto_render()</a></code></p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>output file name</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
Loading…
Add table
Add a link
Reference in a new issue