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136 changed files with 851 additions and 423 deletions
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@ -22,7 +22,7 @@
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<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
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</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
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<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
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<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
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<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/FreesearchR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
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</ul></div>
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@ -32,7 +32,7 @@
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<main id="main" class="col-md-9"><div class="page-header">
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<h1>Create a regression model programatically</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/regression_model.R" class="external-link"><code>R/regression_model.R</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/FreesearchR/blob/main/R/regression_model.R" class="external-link"><code>R/regression_model.R</code></a></small>
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<div class="d-none name"><code>regression_model.Rd</code></div>
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</div>
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@ -809,36 +809,52 @@ argsstring2list() or list of arguments. Default is NULL.</p></dd>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c("I", </span>
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<span class="r-out co"><span class="r-pr">#></span> "II", "III"), class = "factor", label = "Grade"), response = structure(c(1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 2L, 1L, NA, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, NA, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, NA, 1L, 1L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, NA, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, NA, 2L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 1L, 2L, NA, 1L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, NA, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 1L, 1L), levels = c("0", "1"), class = "factor", label = "Tumor Response"), </span>
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<span class="r-out co"><span class="r-pr">#></span> death = structure(c(1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 1L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 2L, </span>
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<span class="r-out co"><span class="r-pr">#></span> 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L), levels = c("0", </span>
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<span class="r-out co"><span class="r-pr">#></span> "1"), class = "factor", label = "Patient Died"), ttdeath = structure(c(24, </span>
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<span class="r-out co"><span class="r-pr">#></span> "II", "III"), class = "factor", label = "Grade"), response = structure(c(FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, TRUE, TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, FALSE, FALSE, FALSE, FALSE, TRUE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, TRUE, FALSE, FALSE, TRUE, FALSE, NA, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, FALSE, FALSE, TRUE, FALSE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, FALSE, TRUE, TRUE, FALSE, FALSE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> NA, FALSE, TRUE, TRUE, FALSE, FALSE, TRUE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, FALSE, TRUE, FALSE, TRUE, FALSE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, TRUE, TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, NA, FALSE, FALSE, TRUE, FALSE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, TRUE, FALSE, FALSE, TRUE, TRUE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, TRUE, FALSE, FALSE, FALSE, FALSE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, FALSE, TRUE, FALSE, FALSE, FALSE, TRUE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, TRUE, NA, TRUE, TRUE, TRUE, FALSE, TRUE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, NA, TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, FALSE, FALSE, TRUE, FALSE, FALSE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, FALSE, TRUE, FALSE, TRUE, FALSE, TRUE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, TRUE, TRUE, FALSE, TRUE, NA, FALSE, TRUE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, NA, FALSE, TRUE, TRUE, FALSE, FALSE), label = "Tumor Response"), </span>
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<span class="r-out co"><span class="r-pr">#></span> death = structure(c(FALSE, FALSE, FALSE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, FALSE, TRUE, FALSE, FALSE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, TRUE, FALSE, FALSE, FALSE, FALSE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, TRUE, FALSE, FALSE, TRUE, TRUE, FALSE, TRUE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, TRUE, FALSE, FALSE, FALSE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, FALSE, FALSE, TRUE, FALSE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, FALSE, FALSE, FALSE, TRUE, TRUE, FALSE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, FALSE, TRUE, TRUE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, TRUE, TRUE, FALSE, FALSE, FALSE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, TRUE, TRUE, FALSE, TRUE, TRUE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, TRUE, TRUE, TRUE, FALSE, FALSE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, FALSE, FALSE, TRUE, TRUE, FALSE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, FALSE, FALSE, FALSE, TRUE, TRUE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, FALSE, FALSE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, FALSE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, FALSE, FALSE, FALSE, TRUE, FALSE, TRUE, FALSE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, TRUE, FALSE, TRUE, TRUE, FALSE, FALSE, TRUE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> TRUE, TRUE, FALSE, TRUE, FALSE, TRUE, TRUE, FALSE, TRUE, </span>
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<span class="r-out co"><span class="r-pr">#></span> FALSE, TRUE, FALSE), label = "Patient Died"), ttdeath = structure(c(24, </span>
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<span class="r-out co"><span class="r-pr">#></span> 24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24, </span>
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<span class="r-out co"><span class="r-pr">#></span> 14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92, </span>
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<span class="r-out co"><span class="r-pr">#></span> 23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24, </span>
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@ -861,10 +877,12 @@ argsstring2list() or list of arguments. Default is NULL.</p></dd>
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<span class="r-out co"><span class="r-pr">#></span> "tbl", "data.frame"), row.names = c(NA, -200L)))</span>
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<span class="r-out co"><span class="r-pr">#></span> </span>
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<span class="r-out co"><span class="r-pr">#></span> Coefficients:</span>
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<span class="r-out co"><span class="r-pr">#></span> (Intercept) age marker stageT2 stageT3 stageT4 </span>
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<span class="r-out co"><span class="r-pr">#></span> 1.652845 -0.002014 -0.259849 0.404341 0.117402 -0.002102 </span>
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<span class="r-out co"><span class="r-pr">#></span> gradeII gradeIII response1 death1 ttdeath </span>
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<span class="r-out co"><span class="r-pr">#></span> -0.037012 0.022890 0.498952 -0.003916 -0.076073 </span>
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<span class="r-out co"><span class="r-pr">#></span> (Intercept) age marker stageT2 stageT3 </span>
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<span class="r-out co"><span class="r-pr">#></span> 1.652845 -0.002014 -0.259849 0.404341 0.117402 </span>
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<span class="r-out co"><span class="r-pr">#></span> stageT4 gradeII gradeIII responseTRUE deathTRUE </span>
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<span class="r-out co"><span class="r-pr">#></span> -0.002102 -0.037012 0.022890 0.498952 -0.003916 </span>
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<span class="r-out co"><span class="r-pr">#></span> ttdeath </span>
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<span class="r-out co"><span class="r-pr">#></span> -0.076073 </span>
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<span class="r-out co"><span class="r-pr">#></span> </span>
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<span class="r-out co"><span class="r-pr">#></span> Degrees of Freedom: 172 Total (i.e. Null); 162 Residual</span>
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<span class="r-out co"><span class="r-pr">#></span> (27 observations deleted due to missingness)</span>
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