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reverting and recovering from renv corruption

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Andreas Gammelgaard Damsbo 2024-12-19 21:21:29 +01:00
commit 2ad36d6dde
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12 changed files with 78 additions and 128 deletions
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31
R/helpers.R
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@ -98,7 +98,6 @@ argsstring2list <- function(string) {
#' @param vars variables to force factorize
#'
#' @return data.frame
#' @importFrom REDCapCAST as_factor
#' @export
factorize <- function(data, vars) {
if (!is.null(vars)) {
@ -106,7 +105,7 @@ factorize <- function(data, vars) {
dplyr::mutate(
dplyr::across(
dplyr::all_of(vars),
as_factor
REDCapCAST::as_factor
)
)
} else {
@ -138,7 +137,6 @@ dummy_Imports <- function() {
#'
#' @returns data
#' @export
#' @importFrom REDCapCAST as_factor parse_data numchar2fct
#'
file_export <- function(data, output.format = c("df", "teal", "list"), filename, ...) {
output.format <- match.arg(output.format)
@ -151,9 +149,7 @@ file_export <- function(data, output.format = c("df", "teal", "list"), filename,
{
assign(name, value |>
dplyr::bind_cols() |>
parse_data() |>
as_factor() |>
numchar2fct())
default_parsing())
},
value = data,
name = filename
@ -161,17 +157,15 @@ file_export <- function(data, output.format = c("df", "teal", "list"), filename,
datanames(out) <- filename
} else if (output.format == "df") {
out <- data|>
parse_data() |>
as_factor() |>
numchar2fct()
out <- data |>
default_parsing()
} else if (output.format == "list") {
out <- list(
data = data,
name = filename
)
out <- c(out,...)
out <- c(out, ...)
}
out
@ -180,18 +174,19 @@ file_export <- function(data, output.format = c("df", "teal", "list"), filename,
#' Default data parsing
#'
#' @param data
#' @param data data
#'
#' @returns data.frame or tibble
#' @export
#' @importFrom REDCapCAST as_factor parse_data numchar2fct
#'
#' @examples
#' mtcars |> str()
#' mtcars |> default_parsing() |> str()
default_parsing <- function(data){
#' mtcars |>
#' default_parsing() |>
#' str()
default_parsing <- function(data) {
data |>
parse_data() |>
as_factor() |>
numchar2fct()
REDCapCAST::parse_data() |>
REDCapCAST::as_factor() |>
REDCapCAST::numchar2fct()
}