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feat: added add difference option to overview
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Andreas Gammelgaard Damsbo 2025-12-11 22:48:30 +01:00
commit 2a580965e3
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22 changed files with 159 additions and 36 deletions
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app_docker/app.R
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@ -1,7 +1,7 @@
########
#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpT9sPX5/file6c80650aba81.R
#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpftDBtp/file7bf3239dee0a.R
########
i18n_path <- here::here("translations")
@ -63,7 +63,7 @@ i18n$set_translation_language("en")
#### Current file: /Users/au301842/FreesearchR/R//app_version.R
########
app_version <- function()'25.12.3'
app_version <- function()'25.12.5'
########
@ -109,7 +109,7 @@ baseline_table <- function(data, fun.args = NULL, fun = gtsummary::tbl_summary,
#' mtcars |> create_baseline(by.var = "gear", detail_level = "extended",type = list(gtsummary::all_dichotomous() ~ "categorical"),theme="nejm")
#'
#' create_baseline(default_parsing(mtcars), by.var = "am", add.p = FALSE, add.overall = FALSE, theme = "lancet")
create_baseline <- function(data, ..., by.var, add.p = FALSE, add.overall = FALSE, theme = c("jama", "lancet", "nejm", "qjecon"), detail_level = c("minimal", "extended")) {
create_baseline <- function(data, ..., by.var, add.p = FALSE, add.diff=FALSE, add.overall = FALSE, theme = c("jama", "lancet", "nejm", "qjecon"), detail_level = c("minimal", "extended")) {
theme <- match.arg(theme)
detail_level <- match.arg(detail_level)
@ -172,6 +172,10 @@ create_baseline <- function(data, ..., by.var, add.p = FALSE, add.overall = FALS
gtsummary::add_p() |>
gtsummary::bold_p()
}
if (isTRUE(add.diff)) {
out <- out |>
gtsummary::add_difference()
}
}
out
@ -4438,7 +4442,7 @@ data_types <- function() {
#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
########
hosted_version <- function()'v25.12.3-251211'
hosted_version <- function()'v25.12.5-251211'
########
@ -10285,10 +10289,20 @@ ui_elements <- function(selection) {
"Yes" = "yes"
)
),
shiny::helpText(i18n$t("Option to perform statistical comparisons between strata in baseline table."))
# shiny::helpText(i18n$t("Option to perform statistical comparisons between strata in baseline table.")),
shiny::br(),
shiny::radioButtons(
inputId = "add_diff",
label = i18n$t("Include group differences"),
selected = "no",
inline = TRUE,
choices = list(
"No" = "no",
"Yes" = "yes"
)
)
),
shiny::br(),
shiny::br(),
shiny::actionButton(
inputId = "act_eval",
label = i18n$t("Evaluate"),
@ -13713,6 +13727,7 @@ server <- function(input, output, session) {
by.var = input$strat_var,
add.p = input$add_p == "yes",
add.overall = TRUE,
add.diff = input$add_diff == "yes",
# theme = input$baseline_theme,
detail_level = input$detail_level
)