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new render
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parent
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commit
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2 changed files with 170 additions and 346 deletions
242
app_docker/app.R
242
app_docker/app.R
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@ -1,7 +1,7 @@
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########
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########
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#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//Rtmp1OaGW3/file656737f80bdf.R
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#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpRQAQCo/file4ab639355bd6.R
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########
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########
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i18n_path <- here::here("translations")
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i18n_path <- here::here("translations")
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@ -64,7 +64,7 @@ i18n$set_translation_language("en")
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#### Current file: /Users/au301842/FreesearchR/R//app_version.R
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#### Current file: /Users/au301842/FreesearchR/R//app_version.R
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########
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########
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app_version <- function()'26.3.5'
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app_version <- function()'26.3.6'
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########
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########
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@ -2254,18 +2254,7 @@ data_visuals_ui <- function(id, tab_title = "Plots", ...) {
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#' @export
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#' @export
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data_visuals_server <- function(id,
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data_visuals_server <- function(id,
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data,
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data,
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palettes = c(
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palettes,
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"Perceptual (blue-yellow)" = "viridis",
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"Perceptual (fire)" = "plasma",
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"Colour-blind friendly" = "Okabe-Ito",
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"Qualitative (bold)" = "Dark 2",
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"Qualitative (paired)" = "Paired",
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"Sequential (blues)" = "Blues",
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"Diverging (red-blue)" = "RdBu",
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"Tableau style" = "Tableau 10",
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"Pastel" = "Pastel 1",
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"Rainbow" = "rainbow"
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),
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...) {
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...) {
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shiny::moduleServer(
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shiny::moduleServer(
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id = id,
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id = id,
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@ -2287,100 +2276,6 @@ data_visuals_server <- function(id,
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title = i18n$t("Download"))
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title = i18n$t("Download"))
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})
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})
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# ## --- New attempt
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#
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# rv$plot.params <- shiny::reactive({
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# get_plot_options(input$type) |> purrr::pluck(1)
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# })
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#
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# c(output,
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# list(shiny::renderUI({
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# columnSelectInput(
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# inputId = ns("primary"),
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# data = data,
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# placeholder = "Select variable",
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# label = "Response variable",
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# multiple = FALSE
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# )
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# }),
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# shiny::renderUI({
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# shiny::req(input$primary)
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# # browser()
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#
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# if (!input$primary %in% names(data())) {
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# plot_data <- data()[1]
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# } else {
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# plot_data <- data()[input$primary]
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# }
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#
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# plots <- possible_plots(
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# data = plot_data
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# )
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#
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# plots_named <- get_plot_options(plots) |>
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# lapply(\(.x){
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# stats::setNames(.x$descr, .x$note)
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# })
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#
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# vectorSelectInput(
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# inputId = ns("type"),
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# selected = NULL,
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# label = shiny::h4("Plot type"),
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# choices = Reduce(c, plots_named),
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# multiple = FALSE
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# )
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# }),
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# shiny::renderUI({
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# shiny::req(input$type)
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#
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# cols <- c(
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# rv$plot.params()[["secondary.extra"]],
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# all_but(
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# colnames(subset_types(
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# data(),
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# rv$plot.params()[["secondary.type"]]
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# )),
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# input$primary
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# )
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# )
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#
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# columnSelectInput(
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# inputId = ns("secondary"),
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# data = data,
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# selected = cols[1],
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# placeholder = "Please select",
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# label = if (isTRUE(rv$plot.params()[["secondary.multi"]])) "Additional variables" else "Secondary variable",
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# multiple = rv$plot.params()[["secondary.multi"]],
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# maxItems = rv$plot.params()[["secondary.max"]],
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# col_subset = cols,
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# none_label = "No variable"
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# )
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# }),
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# shiny::renderUI({
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# shiny::req(input$type)
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# columnSelectInput(
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# inputId = ns("tertiary"),
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# data = data,
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# placeholder = "Please select",
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# label = "Grouping variable",
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# multiple = FALSE,
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# col_subset = c(
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# "none",
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# all_but(
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# colnames(subset_types(
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# data(),
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# rv$plot.params()[["tertiary.type"]]
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# )),
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# input$primary,
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# input$secondary
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# )
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# ),
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# none_label = "No stratification"
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# )
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# })
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# )|> setNames(c("primary","type","secondary","tertiary")),keep.null = TRUE)
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output$primary <- shiny::renderUI({
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output$primary <- shiny::renderUI({
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shiny::req(data())
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shiny::req(data())
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columnSelectInput(
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columnSelectInput(
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@ -2395,13 +2290,12 @@ data_visuals_server <- function(id,
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# shiny::observeEvent(data, {
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# shiny::observeEvent(data, {
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# if (is.null(data()) | NROW(data()) == 0) {
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# if (is.null(data()) | NROW(data()) == 0) {
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# shiny::updateActionButton(inputId = ns("act_plot"), disabled = TRUE)
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# shiny::updateActionButton(inputId = "act_plot", disabled = TRUE)
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# } else {
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# } else {
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# shiny::updateActionButton(inputId = ns("act_plot"), disabled = FALSE)
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# shiny::updateActionButton(inputId = "act_plot", disabled = FALSE)
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# }
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# }
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# })
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# })
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output$type <- shiny::renderUI({
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output$type <- shiny::renderUI({
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shiny::req(input$primary)
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shiny::req(input$primary)
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shiny::req(data())
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shiny::req(data())
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@ -2747,6 +2641,7 @@ supported_plots <- function() {
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primary.type = c("dichotomous", "categorical"),
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primary.type = c("dichotomous", "categorical"),
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secondary.type = c("dichotomous", "categorical"),
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secondary.type = c("dichotomous", "categorical"),
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secondary.multi = TRUE,
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secondary.multi = TRUE,
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secondary.extra = NULL,
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tertiary.type = c("dichotomous", "categorical"),
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tertiary.type = c("dichotomous", "categorical"),
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secondary.extra = NULL
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secondary.extra = NULL
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)
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)
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@ -3918,7 +3813,8 @@ footer_ui <- function(i18n) {
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#'
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#'
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#' @export
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#' @export
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generate_colors <- function(n, palette = "viridis", ...) {
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generate_colors <- function(n, palette = "viridis", ...) {
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if (!is.numeric(n) || length(n) != 1 || n < 1 || n != as.integer(n)) {
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if (!is.numeric(n) ||
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length(n) != 1 || n < 1 || n != as.integer(n)) {
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stop("`n` must be a single positive integer.")
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stop("`n` must be a single positive integer.")
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}
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}
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@ -3931,7 +3827,8 @@ generate_colors <- function(n, palette = "viridis", ...) {
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stop("`palette` must be a single character string or a function.")
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stop("`palette` must be a single character string or a function.")
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}
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}
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if (!is.numeric(n) || length(n) != 1 || n < 1 || n != as.integer(n)) {
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if (!is.numeric(n) ||
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length(n) != 1 || n < 1 || n != as.integer(n)) {
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stop("`n` must be a single positive integer.")
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stop("`n` must be a single positive integer.")
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}
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}
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if (!is.character(palette) || length(palette) != 1) {
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if (!is.character(palette) || length(palette) != 1) {
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@ -3940,10 +3837,14 @@ generate_colors <- function(n, palette = "viridis", ...) {
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palette_lower <- tolower(palette)
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palette_lower <- tolower(palette)
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viridis_palettes <- c(
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viridis_palettes <- c("viridis",
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"viridis", "magma", "plasma", "inferno",
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"magma",
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"cividis", "mako", "rocket", "turbo"
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"plasma",
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)
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"inferno",
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"cividis",
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"mako",
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"rocket",
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"turbo")
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if (palette_lower %in% viridis_palettes) {
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if (palette_lower %in% viridis_palettes) {
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viridisLite::viridis(n = n, option = palette_lower, ...)
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viridisLite::viridis(n = n, option = palette_lower, ...)
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@ -3976,8 +3877,11 @@ generate_colors <- function(n, palette = "viridis", ...) {
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grDevices::hcl.colors(n = n, palette = palette, ...)
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grDevices::hcl.colors(n = n, palette = palette, ...)
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} else {
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} else {
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message(paste0(
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message(
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"Unknown palette: '", palette, "'. ",
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paste0(
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"Unknown palette: '",
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palette,
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"'. ",
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"Falling back to default R colors.\n",
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"Falling back to default R colors.\n",
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"Available options:\n",
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"Available options:\n",
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" viridisLite : viridis, magma, plasma, inferno, cividis, mako, rocket, turbo\n",
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" viridisLite : viridis, magma, plasma, inferno, cividis, mako, rocket, turbo\n",
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@ -3985,7 +3889,8 @@ generate_colors <- function(n, palette = "viridis", ...) {
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" grDevices HCL: use grDevices::hcl.pals() to see all options\n",
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" grDevices HCL: use grDevices::hcl.pals() to see all options\n",
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" grDevices : use grDevices::palette.pals() to see all options\n",
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" grDevices : use grDevices::palette.pals() to see all options\n",
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" RColorBrewer : use RColorBrewer::brewer.pal.info to see all options"
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" RColorBrewer : use RColorBrewer::brewer.pal.info to see all options"
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))
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)
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)
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viridisLite::viridis(n = n, option = "viridis")
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viridisLite::viridis(n = n, option = "viridis")
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# grDevices::hcl.colors(n = n)
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# grDevices::hcl.colors(n = n)
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}
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}
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@ -4028,7 +3933,9 @@ continuous_colors <- function(palette = "viridis", n = 256, ...) {
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ramp <- grDevices::colorRamp(colors)
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ramp <- grDevices::colorRamp(colors)
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function(x) {
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function(x) {
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if (any(x < 0 | x > 1, na.rm = TRUE)) stop("Values must be in [0, 1].")
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if (any(x < 0 |
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x > 1, na.rm = TRUE))
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stop("Values must be in [0, 1].")
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rgb_vals <- ramp(x)
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rgb_vals <- ramp(x)
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grDevices::rgb(rgb_vals[, 1], rgb_vals[, 2], rgb_vals[, 3], maxColorValue = 255)
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grDevices::rgb(rgb_vals[, 1], rgb_vals[, 2], rgb_vals[, 3], maxColorValue = 255)
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}
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}
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@ -4062,18 +3969,18 @@ continuous_colors <- function(palette = "viridis", n = 256, ...) {
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#'
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#'
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#' @seealso [scale_color_generate()], [generate_colors()], [continuous_colors()]
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#' @seealso [scale_color_generate()], [generate_colors()], [continuous_colors()]
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#' @export
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#' @export
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scale_fill_generate <- function(palette = "viridis", discrete = TRUE, ...) {
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scale_fill_generate <- function(palette = "viridis",
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discrete = TRUE,
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...) {
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if (discrete) {
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if (discrete) {
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ggplot2::discrete_scale(
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ggplot2::discrete_scale(
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aesthetics = "fill",
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aesthetics = "fill",
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palette = function(n) generate_colors(n, palette),
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palette = function(n)
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generate_colors(n, palette),
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...
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...
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)
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)
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} else {
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} else {
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ggplot2::scale_fill_gradientn(
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ggplot2::scale_fill_gradientn(colors = continuous_colors(palette)(seq(0, 1, length.out = 256)), ...)
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colors = continuous_colors(palette)(seq(0, 1, length.out = 256)),
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...
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)
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}
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}
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}
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}
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@ -4083,22 +3990,38 @@ scale_fill_generate <- function(palette = "viridis", discrete = TRUE, ...) {
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#' geom_point() +
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#' geom_point() +
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#' scale_color_generate(palette = "Set1")
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#' scale_color_generate(palette = "Set1")
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#' @export
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#' @export
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scale_color_generate <- function(palette = "viridis", discrete = TRUE, ...) {
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scale_color_generate <- function(palette = "viridis",
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discrete = TRUE,
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...) {
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if (discrete) {
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if (discrete) {
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ggplot2::discrete_scale(
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ggplot2::discrete_scale(
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aesthetics = "colour",
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aesthetics = "colour",
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palette = function(n) generate_colors(n, palette),
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palette = function(n)
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generate_colors(n, palette),
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...
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...
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)
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)
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} else {
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} else {
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ggplot2::scale_color_gradientn(
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ggplot2::scale_color_gradientn(colors = continuous_colors(palette)(seq(0, 1, length.out = 256)), ...)
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colors = continuous_colors(palette)(seq(0, 1, length.out = 256)),
|
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...
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)
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}
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}
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}
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}
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color_choices <- function() {
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c(
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"Perceptual (blue-yellow)" = "viridis",
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"Perceptual (fire)" = "plasma",
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"Colour-blind friendly" = "Okabe-Ito",
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"Qualitative (bold)" = "Dark 2",
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"Qualitative (paired)" = "Paired",
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"Sequential (blues)" = "Blues",
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"Diverging (red-blue)" = "RdBu",
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"Tableau style" = "Tableau 10",
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"Pastel" = "Pastel 1",
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"Rainbow" = "rainbow"
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)
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}
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########
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########
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#### Current file: /Users/au301842/FreesearchR/R//helpers.R
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#### Current file: /Users/au301842/FreesearchR/R//helpers.R
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########
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########
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@ -5002,7 +4925,7 @@ apply_idea_filter <- function(filtered_reactive, df_target, env = parent.frame()
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#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
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#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
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########
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########
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hosted_version <- function()'v26.3.5-260330'
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hosted_version <- function()'v26.3.6-260331'
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########
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########
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@ -7041,30 +6964,12 @@ plot_bar_single <- function(data, pri, sec = NULL, style = c("stack", "dodge", "
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if (nrow(p_data) > max_level) {
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if (nrow(p_data) > max_level) {
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# browser()
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p_data <- sort_by(
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p_data <- sort_by(
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p_data,
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p_data,
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p_data[["Freq"]],
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p_data[["Freq"]],
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decreasing = TRUE
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decreasing = TRUE
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) |>
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) |>
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head(max_level)
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head(max_level)
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# if (is.null(sec)){
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# p_data <- sort_by(
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# p_data,
|
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# p_data[["Freq"]],
|
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# decreasing=TRUE) |>
|
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# head(max_level)
|
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# } else {
|
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# split(p_data,p_data[[sec]]) |>
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|
||||||
# lapply(\(.x){
|
|
||||||
# # browser()
|
|
||||||
# sort_by(
|
|
||||||
# .x,
|
|
||||||
# .x[["Freq"]],
|
|
||||||
# decreasing=TRUE) |>
|
|
||||||
# head(max_level)
|
|
||||||
# }) |> dplyr::bind_rows()
|
|
||||||
# }
|
|
||||||
}
|
}
|
||||||
|
|
||||||
## Shortens long level names
|
## Shortens long level names
|
||||||
|
|
@ -7388,7 +7293,7 @@ plot_euler_single <- function(data,color.palette="viridis") {
|
||||||
#' mtcars |> plot_hbars(pri = "carb", sec = "cyl", ter="am")
|
#' mtcars |> plot_hbars(pri = "carb", sec = "cyl", ter="am")
|
||||||
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Blues")
|
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Blues")
|
||||||
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Magma")
|
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Magma")
|
||||||
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Viridis")
|
#' mtcars |> plot_hbars(pri = "carb", sec = "am",color.palette="Viridis")
|
||||||
plot_hbars <- function(data,
|
plot_hbars <- function(data,
|
||||||
pri,
|
pri,
|
||||||
sec,
|
sec,
|
||||||
|
|
@ -7419,7 +7324,7 @@ vertical_stacked_bars <- function(data,
|
||||||
score = "full_score",
|
score = "full_score",
|
||||||
group = "pase_0_q",
|
group = "pase_0_q",
|
||||||
strata = NULL,
|
strata = NULL,
|
||||||
t.size = 10,
|
t.size = 8,
|
||||||
l.color = "black",
|
l.color = "black",
|
||||||
l.size = .5,
|
l.size = .5,
|
||||||
draw.lines = TRUE,
|
draw.lines = TRUE,
|
||||||
|
|
@ -7455,12 +7360,12 @@ vertical_stacked_bars <- function(data,
|
||||||
if (isTRUE(reverse)) {
|
if (isTRUE(reverse)) {
|
||||||
colors <- rev(colors)
|
colors <- rev(colors)
|
||||||
}
|
}
|
||||||
contrast_cut <-
|
|
||||||
contrast_text(colors, threshold = .3) == "white"
|
|
||||||
|
|
||||||
score_label <- data |> get_label(var = score)
|
score_label <- data |> get_label(var = score)
|
||||||
group_label <- data |> get_label(var = group)
|
group_label <- data |> get_label(var = group)
|
||||||
|
|
||||||
|
# browser()
|
||||||
|
|
||||||
p |>
|
p |>
|
||||||
(\(.x) {
|
(\(.x) {
|
||||||
.x$plot +
|
.x$plot +
|
||||||
|
|
@ -7472,7 +7377,7 @@ vertical_stacked_bars <- function(data,
|
||||||
ggplot2::aes(
|
ggplot2::aes(
|
||||||
x = group,
|
x = group,
|
||||||
y = p_prev + 0.49 * p,
|
y = p_prev + 0.49 * p,
|
||||||
color = contrast_cut,
|
color = contrast_text(colors[as.numeric(score)], threshold = .3),
|
||||||
# label = paste0(sprintf("%2.0f", 100 * p),"%"),
|
# label = paste0(sprintf("%2.0f", 100 * p),"%"),
|
||||||
# label = sprintf("%2.0f", 100 * p)
|
# label = sprintf("%2.0f", 100 * p)
|
||||||
label = glue::glue(label.str)
|
label = glue::glue(label.str)
|
||||||
|
|
@ -7481,8 +7386,7 @@ vertical_stacked_bars <- function(data,
|
||||||
ggplot2::labs(fill = score_label) +
|
ggplot2::labs(fill = score_label) +
|
||||||
ggplot2::scale_fill_manual(values = colors) +
|
ggplot2::scale_fill_manual(values = colors) +
|
||||||
ggplot2::theme(legend.position = "bottom",
|
ggplot2::theme(legend.position = "bottom",
|
||||||
axis.title = ggplot2::element_text(),
|
axis.title = ggplot2::element_text(),) +
|
||||||
) +
|
|
||||||
ggplot2::xlab(group_label) +
|
ggplot2::xlab(group_label) +
|
||||||
ggplot2::ylab(NULL)
|
ggplot2::ylab(NULL)
|
||||||
})()
|
})()
|
||||||
|
|
@ -7517,17 +7421,23 @@ plot_likert <- function(data,
|
||||||
ds <- list(data)
|
ds <- list(data)
|
||||||
}
|
}
|
||||||
out <- lapply(ds, \(.x) {
|
out <- lapply(ds, \(.x) {
|
||||||
.x[c(pri, sec)] |>
|
plot_likert_single(
|
||||||
# na.omit() |>
|
data = .x,
|
||||||
plot_likert_single(color.palette = color.palette)
|
include = tidyselect::any_of(c(pri, sec)),
|
||||||
|
color.palette = color.palette
|
||||||
|
)
|
||||||
})
|
})
|
||||||
|
|
||||||
wrap_plot_list(out, title = glue::glue(i18n$t("Grouped by {get_label(data,ter)}")))
|
wrap_plot_list(out, title = glue::glue(i18n$t("Grouped by {get_label(data,ter)}")))
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
plot_likert_single <- function(data, color.palette = "viridis") {
|
plot_likert_single <- function(data,
|
||||||
ggstats::gglikert(data = data) +
|
include = dplyr::everything(),
|
||||||
|
color.palette = "viridis") {
|
||||||
|
data |>
|
||||||
|
dplyr::as_tibble() |>
|
||||||
|
ggstats::gglikert(include = include) +
|
||||||
scale_fill_generate(palette = color.palette) +
|
scale_fill_generate(palette = color.palette) +
|
||||||
ggplot2::theme(
|
ggplot2::theme(
|
||||||
# legend.position = "none",
|
# legend.position = "none",
|
||||||
|
|
@ -16164,7 +16074,9 @@ server <- function(input, output, session) {
|
||||||
#########
|
#########
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
||||||
pl <- data_visuals_server("visuals", data = shiny::reactive(rv$list$data))
|
pl <- data_visuals_server("visuals",
|
||||||
|
data = shiny::reactive(rv$list$data),
|
||||||
|
palettes = color_choices())
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
#########
|
#########
|
||||||
|
|
|
||||||
|
|
@ -1,7 +1,7 @@
|
||||||
|
|
||||||
|
|
||||||
########
|
########
|
||||||
#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpgCu9u6/file55d839c4d43b.R
|
#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpRQAQCo/file4ab61747a8d7.R
|
||||||
########
|
########
|
||||||
|
|
||||||
i18n_path <- system.file("translations", package = "FreesearchR")
|
i18n_path <- system.file("translations", package = "FreesearchR")
|
||||||
|
|
@ -64,7 +64,7 @@ i18n$set_translation_language("en")
|
||||||
#### Current file: /Users/au301842/FreesearchR/R//app_version.R
|
#### Current file: /Users/au301842/FreesearchR/R//app_version.R
|
||||||
########
|
########
|
||||||
|
|
||||||
app_version <- function()'26.3.5'
|
app_version <- function()'26.3.6'
|
||||||
|
|
||||||
|
|
||||||
########
|
########
|
||||||
|
|
@ -2254,18 +2254,7 @@ data_visuals_ui <- function(id, tab_title = "Plots", ...) {
|
||||||
#' @export
|
#' @export
|
||||||
data_visuals_server <- function(id,
|
data_visuals_server <- function(id,
|
||||||
data,
|
data,
|
||||||
palettes = c(
|
palettes,
|
||||||
"Perceptual (blue-yellow)" = "viridis",
|
|
||||||
"Perceptual (fire)" = "plasma",
|
|
||||||
"Colour-blind friendly" = "Okabe-Ito",
|
|
||||||
"Qualitative (bold)" = "Dark 2",
|
|
||||||
"Qualitative (paired)" = "Paired",
|
|
||||||
"Sequential (blues)" = "Blues",
|
|
||||||
"Diverging (red-blue)" = "RdBu",
|
|
||||||
"Tableau style" = "Tableau 10",
|
|
||||||
"Pastel" = "Pastel 1",
|
|
||||||
"Rainbow" = "rainbow"
|
|
||||||
),
|
|
||||||
...) {
|
...) {
|
||||||
shiny::moduleServer(
|
shiny::moduleServer(
|
||||||
id = id,
|
id = id,
|
||||||
|
|
@ -2287,100 +2276,6 @@ data_visuals_server <- function(id,
|
||||||
title = i18n$t("Download"))
|
title = i18n$t("Download"))
|
||||||
})
|
})
|
||||||
|
|
||||||
# ## --- New attempt
|
|
||||||
#
|
|
||||||
# rv$plot.params <- shiny::reactive({
|
|
||||||
# get_plot_options(input$type) |> purrr::pluck(1)
|
|
||||||
# })
|
|
||||||
#
|
|
||||||
# c(output,
|
|
||||||
# list(shiny::renderUI({
|
|
||||||
# columnSelectInput(
|
|
||||||
# inputId = ns("primary"),
|
|
||||||
# data = data,
|
|
||||||
# placeholder = "Select variable",
|
|
||||||
# label = "Response variable",
|
|
||||||
# multiple = FALSE
|
|
||||||
# )
|
|
||||||
# }),
|
|
||||||
# shiny::renderUI({
|
|
||||||
# shiny::req(input$primary)
|
|
||||||
# # browser()
|
|
||||||
#
|
|
||||||
# if (!input$primary %in% names(data())) {
|
|
||||||
# plot_data <- data()[1]
|
|
||||||
# } else {
|
|
||||||
# plot_data <- data()[input$primary]
|
|
||||||
# }
|
|
||||||
#
|
|
||||||
# plots <- possible_plots(
|
|
||||||
# data = plot_data
|
|
||||||
# )
|
|
||||||
#
|
|
||||||
# plots_named <- get_plot_options(plots) |>
|
|
||||||
# lapply(\(.x){
|
|
||||||
# stats::setNames(.x$descr, .x$note)
|
|
||||||
# })
|
|
||||||
#
|
|
||||||
# vectorSelectInput(
|
|
||||||
# inputId = ns("type"),
|
|
||||||
# selected = NULL,
|
|
||||||
# label = shiny::h4("Plot type"),
|
|
||||||
# choices = Reduce(c, plots_named),
|
|
||||||
# multiple = FALSE
|
|
||||||
# )
|
|
||||||
# }),
|
|
||||||
# shiny::renderUI({
|
|
||||||
# shiny::req(input$type)
|
|
||||||
#
|
|
||||||
# cols <- c(
|
|
||||||
# rv$plot.params()[["secondary.extra"]],
|
|
||||||
# all_but(
|
|
||||||
# colnames(subset_types(
|
|
||||||
# data(),
|
|
||||||
# rv$plot.params()[["secondary.type"]]
|
|
||||||
# )),
|
|
||||||
# input$primary
|
|
||||||
# )
|
|
||||||
# )
|
|
||||||
#
|
|
||||||
# columnSelectInput(
|
|
||||||
# inputId = ns("secondary"),
|
|
||||||
# data = data,
|
|
||||||
# selected = cols[1],
|
|
||||||
# placeholder = "Please select",
|
|
||||||
# label = if (isTRUE(rv$plot.params()[["secondary.multi"]])) "Additional variables" else "Secondary variable",
|
|
||||||
# multiple = rv$plot.params()[["secondary.multi"]],
|
|
||||||
# maxItems = rv$plot.params()[["secondary.max"]],
|
|
||||||
# col_subset = cols,
|
|
||||||
# none_label = "No variable"
|
|
||||||
# )
|
|
||||||
# }),
|
|
||||||
# shiny::renderUI({
|
|
||||||
# shiny::req(input$type)
|
|
||||||
# columnSelectInput(
|
|
||||||
# inputId = ns("tertiary"),
|
|
||||||
# data = data,
|
|
||||||
# placeholder = "Please select",
|
|
||||||
# label = "Grouping variable",
|
|
||||||
# multiple = FALSE,
|
|
||||||
# col_subset = c(
|
|
||||||
# "none",
|
|
||||||
# all_but(
|
|
||||||
# colnames(subset_types(
|
|
||||||
# data(),
|
|
||||||
# rv$plot.params()[["tertiary.type"]]
|
|
||||||
# )),
|
|
||||||
# input$primary,
|
|
||||||
# input$secondary
|
|
||||||
# )
|
|
||||||
# ),
|
|
||||||
# none_label = "No stratification"
|
|
||||||
# )
|
|
||||||
# })
|
|
||||||
# )|> setNames(c("primary","type","secondary","tertiary")),keep.null = TRUE)
|
|
||||||
|
|
||||||
|
|
||||||
output$primary <- shiny::renderUI({
|
output$primary <- shiny::renderUI({
|
||||||
shiny::req(data())
|
shiny::req(data())
|
||||||
columnSelectInput(
|
columnSelectInput(
|
||||||
|
|
@ -2395,13 +2290,12 @@ data_visuals_server <- function(id,
|
||||||
|
|
||||||
# shiny::observeEvent(data, {
|
# shiny::observeEvent(data, {
|
||||||
# if (is.null(data()) | NROW(data()) == 0) {
|
# if (is.null(data()) | NROW(data()) == 0) {
|
||||||
# shiny::updateActionButton(inputId = ns("act_plot"), disabled = TRUE)
|
# shiny::updateActionButton(inputId = "act_plot", disabled = TRUE)
|
||||||
# } else {
|
# } else {
|
||||||
# shiny::updateActionButton(inputId = ns("act_plot"), disabled = FALSE)
|
# shiny::updateActionButton(inputId = "act_plot", disabled = FALSE)
|
||||||
# }
|
# }
|
||||||
# })
|
# })
|
||||||
|
|
||||||
|
|
||||||
output$type <- shiny::renderUI({
|
output$type <- shiny::renderUI({
|
||||||
shiny::req(input$primary)
|
shiny::req(input$primary)
|
||||||
shiny::req(data())
|
shiny::req(data())
|
||||||
|
|
@ -2747,6 +2641,7 @@ supported_plots <- function() {
|
||||||
primary.type = c("dichotomous", "categorical"),
|
primary.type = c("dichotomous", "categorical"),
|
||||||
secondary.type = c("dichotomous", "categorical"),
|
secondary.type = c("dichotomous", "categorical"),
|
||||||
secondary.multi = TRUE,
|
secondary.multi = TRUE,
|
||||||
|
secondary.extra = NULL,
|
||||||
tertiary.type = c("dichotomous", "categorical"),
|
tertiary.type = c("dichotomous", "categorical"),
|
||||||
secondary.extra = NULL
|
secondary.extra = NULL
|
||||||
)
|
)
|
||||||
|
|
@ -3918,7 +3813,8 @@ footer_ui <- function(i18n) {
|
||||||
#'
|
#'
|
||||||
#' @export
|
#' @export
|
||||||
generate_colors <- function(n, palette = "viridis", ...) {
|
generate_colors <- function(n, palette = "viridis", ...) {
|
||||||
if (!is.numeric(n) || length(n) != 1 || n < 1 || n != as.integer(n)) {
|
if (!is.numeric(n) ||
|
||||||
|
length(n) != 1 || n < 1 || n != as.integer(n)) {
|
||||||
stop("`n` must be a single positive integer.")
|
stop("`n` must be a single positive integer.")
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
@ -3931,7 +3827,8 @@ generate_colors <- function(n, palette = "viridis", ...) {
|
||||||
stop("`palette` must be a single character string or a function.")
|
stop("`palette` must be a single character string or a function.")
|
||||||
}
|
}
|
||||||
|
|
||||||
if (!is.numeric(n) || length(n) != 1 || n < 1 || n != as.integer(n)) {
|
if (!is.numeric(n) ||
|
||||||
|
length(n) != 1 || n < 1 || n != as.integer(n)) {
|
||||||
stop("`n` must be a single positive integer.")
|
stop("`n` must be a single positive integer.")
|
||||||
}
|
}
|
||||||
if (!is.character(palette) || length(palette) != 1) {
|
if (!is.character(palette) || length(palette) != 1) {
|
||||||
|
|
@ -3940,10 +3837,14 @@ generate_colors <- function(n, palette = "viridis", ...) {
|
||||||
|
|
||||||
palette_lower <- tolower(palette)
|
palette_lower <- tolower(palette)
|
||||||
|
|
||||||
viridis_palettes <- c(
|
viridis_palettes <- c("viridis",
|
||||||
"viridis", "magma", "plasma", "inferno",
|
"magma",
|
||||||
"cividis", "mako", "rocket", "turbo"
|
"plasma",
|
||||||
)
|
"inferno",
|
||||||
|
"cividis",
|
||||||
|
"mako",
|
||||||
|
"rocket",
|
||||||
|
"turbo")
|
||||||
|
|
||||||
if (palette_lower %in% viridis_palettes) {
|
if (palette_lower %in% viridis_palettes) {
|
||||||
viridisLite::viridis(n = n, option = palette_lower, ...)
|
viridisLite::viridis(n = n, option = palette_lower, ...)
|
||||||
|
|
@ -3976,8 +3877,11 @@ generate_colors <- function(n, palette = "viridis", ...) {
|
||||||
grDevices::hcl.colors(n = n, palette = palette, ...)
|
grDevices::hcl.colors(n = n, palette = palette, ...)
|
||||||
|
|
||||||
} else {
|
} else {
|
||||||
message(paste0(
|
message(
|
||||||
"Unknown palette: '", palette, "'. ",
|
paste0(
|
||||||
|
"Unknown palette: '",
|
||||||
|
palette,
|
||||||
|
"'. ",
|
||||||
"Falling back to default R colors.\n",
|
"Falling back to default R colors.\n",
|
||||||
"Available options:\n",
|
"Available options:\n",
|
||||||
" viridisLite : viridis, magma, plasma, inferno, cividis, mako, rocket, turbo\n",
|
" viridisLite : viridis, magma, plasma, inferno, cividis, mako, rocket, turbo\n",
|
||||||
|
|
@ -3985,7 +3889,8 @@ generate_colors <- function(n, palette = "viridis", ...) {
|
||||||
" grDevices HCL: use grDevices::hcl.pals() to see all options\n",
|
" grDevices HCL: use grDevices::hcl.pals() to see all options\n",
|
||||||
" grDevices : use grDevices::palette.pals() to see all options\n",
|
" grDevices : use grDevices::palette.pals() to see all options\n",
|
||||||
" RColorBrewer : use RColorBrewer::brewer.pal.info to see all options"
|
" RColorBrewer : use RColorBrewer::brewer.pal.info to see all options"
|
||||||
))
|
)
|
||||||
|
)
|
||||||
viridisLite::viridis(n = n, option = "viridis")
|
viridisLite::viridis(n = n, option = "viridis")
|
||||||
# grDevices::hcl.colors(n = n)
|
# grDevices::hcl.colors(n = n)
|
||||||
}
|
}
|
||||||
|
|
@ -4028,7 +3933,9 @@ continuous_colors <- function(palette = "viridis", n = 256, ...) {
|
||||||
ramp <- grDevices::colorRamp(colors)
|
ramp <- grDevices::colorRamp(colors)
|
||||||
|
|
||||||
function(x) {
|
function(x) {
|
||||||
if (any(x < 0 | x > 1, na.rm = TRUE)) stop("Values must be in [0, 1].")
|
if (any(x < 0 |
|
||||||
|
x > 1, na.rm = TRUE))
|
||||||
|
stop("Values must be in [0, 1].")
|
||||||
rgb_vals <- ramp(x)
|
rgb_vals <- ramp(x)
|
||||||
grDevices::rgb(rgb_vals[, 1], rgb_vals[, 2], rgb_vals[, 3], maxColorValue = 255)
|
grDevices::rgb(rgb_vals[, 1], rgb_vals[, 2], rgb_vals[, 3], maxColorValue = 255)
|
||||||
}
|
}
|
||||||
|
|
@ -4062,18 +3969,18 @@ continuous_colors <- function(palette = "viridis", n = 256, ...) {
|
||||||
#'
|
#'
|
||||||
#' @seealso [scale_color_generate()], [generate_colors()], [continuous_colors()]
|
#' @seealso [scale_color_generate()], [generate_colors()], [continuous_colors()]
|
||||||
#' @export
|
#' @export
|
||||||
scale_fill_generate <- function(palette = "viridis", discrete = TRUE, ...) {
|
scale_fill_generate <- function(palette = "viridis",
|
||||||
|
discrete = TRUE,
|
||||||
|
...) {
|
||||||
if (discrete) {
|
if (discrete) {
|
||||||
ggplot2::discrete_scale(
|
ggplot2::discrete_scale(
|
||||||
aesthetics = "fill",
|
aesthetics = "fill",
|
||||||
palette = function(n) generate_colors(n, palette),
|
palette = function(n)
|
||||||
|
generate_colors(n, palette),
|
||||||
...
|
...
|
||||||
)
|
)
|
||||||
} else {
|
} else {
|
||||||
ggplot2::scale_fill_gradientn(
|
ggplot2::scale_fill_gradientn(colors = continuous_colors(palette)(seq(0, 1, length.out = 256)), ...)
|
||||||
colors = continuous_colors(palette)(seq(0, 1, length.out = 256)),
|
|
||||||
...
|
|
||||||
)
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
@ -4083,22 +3990,38 @@ scale_fill_generate <- function(palette = "viridis", discrete = TRUE, ...) {
|
||||||
#' geom_point() +
|
#' geom_point() +
|
||||||
#' scale_color_generate(palette = "Set1")
|
#' scale_color_generate(palette = "Set1")
|
||||||
#' @export
|
#' @export
|
||||||
scale_color_generate <- function(palette = "viridis", discrete = TRUE, ...) {
|
scale_color_generate <- function(palette = "viridis",
|
||||||
|
discrete = TRUE,
|
||||||
|
...) {
|
||||||
if (discrete) {
|
if (discrete) {
|
||||||
ggplot2::discrete_scale(
|
ggplot2::discrete_scale(
|
||||||
aesthetics = "colour",
|
aesthetics = "colour",
|
||||||
palette = function(n) generate_colors(n, palette),
|
palette = function(n)
|
||||||
|
generate_colors(n, palette),
|
||||||
...
|
...
|
||||||
)
|
)
|
||||||
} else {
|
} else {
|
||||||
ggplot2::scale_color_gradientn(
|
ggplot2::scale_color_gradientn(colors = continuous_colors(palette)(seq(0, 1, length.out = 256)), ...)
|
||||||
colors = continuous_colors(palette)(seq(0, 1, length.out = 256)),
|
|
||||||
...
|
|
||||||
)
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
|
color_choices <- function() {
|
||||||
|
c(
|
||||||
|
"Perceptual (blue-yellow)" = "viridis",
|
||||||
|
"Perceptual (fire)" = "plasma",
|
||||||
|
"Colour-blind friendly" = "Okabe-Ito",
|
||||||
|
"Qualitative (bold)" = "Dark 2",
|
||||||
|
"Qualitative (paired)" = "Paired",
|
||||||
|
"Sequential (blues)" = "Blues",
|
||||||
|
"Diverging (red-blue)" = "RdBu",
|
||||||
|
"Tableau style" = "Tableau 10",
|
||||||
|
"Pastel" = "Pastel 1",
|
||||||
|
"Rainbow" = "rainbow"
|
||||||
|
)
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
########
|
########
|
||||||
#### Current file: /Users/au301842/FreesearchR/R//helpers.R
|
#### Current file: /Users/au301842/FreesearchR/R//helpers.R
|
||||||
########
|
########
|
||||||
|
|
@ -5002,7 +4925,7 @@ apply_idea_filter <- function(filtered_reactive, df_target, env = parent.frame()
|
||||||
#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
|
#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
|
||||||
########
|
########
|
||||||
|
|
||||||
hosted_version <- function()'v26.3.5-260330'
|
hosted_version <- function()'v26.3.6-260331'
|
||||||
|
|
||||||
|
|
||||||
########
|
########
|
||||||
|
|
@ -7041,30 +6964,12 @@ plot_bar_single <- function(data, pri, sec = NULL, style = c("stack", "dodge", "
|
||||||
|
|
||||||
|
|
||||||
if (nrow(p_data) > max_level) {
|
if (nrow(p_data) > max_level) {
|
||||||
# browser()
|
|
||||||
p_data <- sort_by(
|
p_data <- sort_by(
|
||||||
p_data,
|
p_data,
|
||||||
p_data[["Freq"]],
|
p_data[["Freq"]],
|
||||||
decreasing = TRUE
|
decreasing = TRUE
|
||||||
) |>
|
) |>
|
||||||
head(max_level)
|
head(max_level)
|
||||||
# if (is.null(sec)){
|
|
||||||
# p_data <- sort_by(
|
|
||||||
# p_data,
|
|
||||||
# p_data[["Freq"]],
|
|
||||||
# decreasing=TRUE) |>
|
|
||||||
# head(max_level)
|
|
||||||
# } else {
|
|
||||||
# split(p_data,p_data[[sec]]) |>
|
|
||||||
# lapply(\(.x){
|
|
||||||
# # browser()
|
|
||||||
# sort_by(
|
|
||||||
# .x,
|
|
||||||
# .x[["Freq"]],
|
|
||||||
# decreasing=TRUE) |>
|
|
||||||
# head(max_level)
|
|
||||||
# }) |> dplyr::bind_rows()
|
|
||||||
# }
|
|
||||||
}
|
}
|
||||||
|
|
||||||
## Shortens long level names
|
## Shortens long level names
|
||||||
|
|
@ -7388,7 +7293,7 @@ plot_euler_single <- function(data,color.palette="viridis") {
|
||||||
#' mtcars |> plot_hbars(pri = "carb", sec = "cyl", ter="am")
|
#' mtcars |> plot_hbars(pri = "carb", sec = "cyl", ter="am")
|
||||||
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Blues")
|
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Blues")
|
||||||
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Magma")
|
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Magma")
|
||||||
#' mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Viridis")
|
#' mtcars |> plot_hbars(pri = "carb", sec = "am",color.palette="Viridis")
|
||||||
plot_hbars <- function(data,
|
plot_hbars <- function(data,
|
||||||
pri,
|
pri,
|
||||||
sec,
|
sec,
|
||||||
|
|
@ -7419,7 +7324,7 @@ vertical_stacked_bars <- function(data,
|
||||||
score = "full_score",
|
score = "full_score",
|
||||||
group = "pase_0_q",
|
group = "pase_0_q",
|
||||||
strata = NULL,
|
strata = NULL,
|
||||||
t.size = 10,
|
t.size = 8,
|
||||||
l.color = "black",
|
l.color = "black",
|
||||||
l.size = .5,
|
l.size = .5,
|
||||||
draw.lines = TRUE,
|
draw.lines = TRUE,
|
||||||
|
|
@ -7455,12 +7360,12 @@ vertical_stacked_bars <- function(data,
|
||||||
if (isTRUE(reverse)) {
|
if (isTRUE(reverse)) {
|
||||||
colors <- rev(colors)
|
colors <- rev(colors)
|
||||||
}
|
}
|
||||||
contrast_cut <-
|
|
||||||
contrast_text(colors, threshold = .3) == "white"
|
|
||||||
|
|
||||||
score_label <- data |> get_label(var = score)
|
score_label <- data |> get_label(var = score)
|
||||||
group_label <- data |> get_label(var = group)
|
group_label <- data |> get_label(var = group)
|
||||||
|
|
||||||
|
# browser()
|
||||||
|
|
||||||
p |>
|
p |>
|
||||||
(\(.x) {
|
(\(.x) {
|
||||||
.x$plot +
|
.x$plot +
|
||||||
|
|
@ -7472,7 +7377,7 @@ vertical_stacked_bars <- function(data,
|
||||||
ggplot2::aes(
|
ggplot2::aes(
|
||||||
x = group,
|
x = group,
|
||||||
y = p_prev + 0.49 * p,
|
y = p_prev + 0.49 * p,
|
||||||
color = contrast_cut,
|
color = contrast_text(colors[as.numeric(score)], threshold = .3),
|
||||||
# label = paste0(sprintf("%2.0f", 100 * p),"%"),
|
# label = paste0(sprintf("%2.0f", 100 * p),"%"),
|
||||||
# label = sprintf("%2.0f", 100 * p)
|
# label = sprintf("%2.0f", 100 * p)
|
||||||
label = glue::glue(label.str)
|
label = glue::glue(label.str)
|
||||||
|
|
@ -7481,8 +7386,7 @@ vertical_stacked_bars <- function(data,
|
||||||
ggplot2::labs(fill = score_label) +
|
ggplot2::labs(fill = score_label) +
|
||||||
ggplot2::scale_fill_manual(values = colors) +
|
ggplot2::scale_fill_manual(values = colors) +
|
||||||
ggplot2::theme(legend.position = "bottom",
|
ggplot2::theme(legend.position = "bottom",
|
||||||
axis.title = ggplot2::element_text(),
|
axis.title = ggplot2::element_text(),) +
|
||||||
) +
|
|
||||||
ggplot2::xlab(group_label) +
|
ggplot2::xlab(group_label) +
|
||||||
ggplot2::ylab(NULL)
|
ggplot2::ylab(NULL)
|
||||||
})()
|
})()
|
||||||
|
|
@ -7517,17 +7421,23 @@ plot_likert <- function(data,
|
||||||
ds <- list(data)
|
ds <- list(data)
|
||||||
}
|
}
|
||||||
out <- lapply(ds, \(.x) {
|
out <- lapply(ds, \(.x) {
|
||||||
.x[c(pri, sec)] |>
|
plot_likert_single(
|
||||||
# na.omit() |>
|
data = .x,
|
||||||
plot_likert_single(color.palette = color.palette)
|
include = tidyselect::any_of(c(pri, sec)),
|
||||||
|
color.palette = color.palette
|
||||||
|
)
|
||||||
})
|
})
|
||||||
|
|
||||||
wrap_plot_list(out, title = glue::glue(i18n$t("Grouped by {get_label(data,ter)}")))
|
wrap_plot_list(out, title = glue::glue(i18n$t("Grouped by {get_label(data,ter)}")))
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
plot_likert_single <- function(data, color.palette = "viridis") {
|
plot_likert_single <- function(data,
|
||||||
ggstats::gglikert(data = data) +
|
include = dplyr::everything(),
|
||||||
|
color.palette = "viridis") {
|
||||||
|
data |>
|
||||||
|
dplyr::as_tibble() |>
|
||||||
|
ggstats::gglikert(include = include) +
|
||||||
scale_fill_generate(palette = color.palette) +
|
scale_fill_generate(palette = color.palette) +
|
||||||
ggplot2::theme(
|
ggplot2::theme(
|
||||||
# legend.position = "none",
|
# legend.position = "none",
|
||||||
|
|
@ -16164,7 +16074,9 @@ server <- function(input, output, session) {
|
||||||
#########
|
#########
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
||||||
pl <- data_visuals_server("visuals", data = shiny::reactive(rv$list$data))
|
pl <- data_visuals_server("visuals",
|
||||||
|
data = shiny::reactive(rv$list$data),
|
||||||
|
palettes = color_choices())
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
#########
|
#########
|
||||||
|
|
|
||||||
Loading…
Add table
Add a link
Reference in a new issue