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@ -25,7 +25,7 @@ Beatiful violin plot"><meta property="og:image" content="https://agdamsbo.github
<a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.6.3</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.6.4</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -55,7 +55,7 @@ Beatiful violin plot"><meta property="og:image" content="https://agdamsbo.github
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Data correlations evaluation module</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/FreesearchR/blob/v25.6.3/R/data_plots.R" class="external-link"><code>R/data_plots.R</code></a>, <a href="https://github.com/agdamsbo/FreesearchR/blob/v25.6.3/R/plot_box.R" class="external-link"><code>R/plot_box.R</code></a>, <a href="https://github.com/agdamsbo/FreesearchR/blob/v25.6.3/R/plot_hbar.R" class="external-link"><code>R/plot_hbar.R</code></a>, and 4 more</small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/FreesearchR/blob/main/R/data_plots.R" class="external-link"><code>R/data_plots.R</code></a>, <a href="https://github.com/agdamsbo/FreesearchR/blob/main/R/plot_box.R" class="external-link"><code>R/plot_box.R</code></a>, <a href="https://github.com/agdamsbo/FreesearchR/blob/main/R/plot_hbar.R" class="external-link"><code>R/plot_hbar.R</code></a>, and 4 more</small>
<div class="d-none name"><code>data-plots.Rd</code></div>
</div>
@ -80,7 +80,7 @@ Beatiful violin plot"><meta property="og:image" content="https://agdamsbo.github
<span></span>
<span><span class="fu">create_plot</span><span class="op">(</span><span class="va">data</span>, <span class="va">type</span>, <span class="va">pri</span>, <span class="va">sec</span>, ter <span class="op">=</span> <span class="cn">NULL</span>, <span class="va">...</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">plot_box</span><span class="op">(</span><span class="va">data</span>, <span class="va">pri</span>, <span class="va">sec</span>, ter <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
<span><span class="fu">plot_box</span><span class="op">(</span><span class="va">data</span>, <span class="va">pri</span>, <span class="va">sec</span>, ter <span class="op">=</span> <span class="cn">NULL</span>, <span class="va">...</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">plot_box_single</span><span class="op">(</span><span class="va">data</span>, <span class="va">pri</span>, sec <span class="op">=</span> <span class="cn">NULL</span>, seed <span class="op">=</span> <span class="fl">2103</span><span class="op">)</span></span>
<span></span>
@ -106,11 +106,11 @@ Beatiful violin plot"><meta property="og:image" content="https://agdamsbo.github
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>ignored for now</p></dd>
<dd><p>passed on to wrap_plot_list</p></dd>
<dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>data.frame</p></dd>
<dd><p>data frame</p></dd>
<dt id="arg-type">type<a class="anchor" aria-label="anchor" href="#arg-type"></a></dt>
@ -147,36 +147,52 @@ Beatiful violin plot"><meta property="og:image" content="https://agdamsbo.github
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">create_plot</span><span class="op">(</span><span class="va">mtcars</span>, <span class="st">"plot_violin"</span>, <span class="st">"mpg"</span>, <span class="st">"cyl"</span><span class="op">)</span> <span class="op">|&gt;</span> <span class="fu"><a href="https://rdrr.io/r/base/attributes.html" class="external-link">attributes</a></span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $names</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "data" "layers" "scales" "guides" "mapping" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [6] "theme" "coordinates" "facet" "plot_env" "layout" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] "labels" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $class</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "gg" "ggplot"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $code</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> FreesearchR::plot_violin(pri = "mpg", sec = "cyl", ter = NULL)</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in purrr::map(p, ~ggplot2::layer_scales(.x)[[axis]]$get_limits()):</span> <span style="color: #00BBBB;">ℹ</span> In index: 2.</span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> With name: 4.</span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span style="font-weight: bold;">Caused by error in `viridis::scale_fill_viridis()`:</span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span style="color: #BBBB00;">!</span> Continuous values supplied to discrete scale.</span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> Example values: <span style="color: #0000BB;">4</span> and <span style="color: #0000BB;">6</span></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-1.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec<span class="op">=</span><span class="st">"cyl"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-2.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-1.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"mpg"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-2.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"mpg"</span>,<span class="st">"cyl"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-3.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter <span class="op">=</span> <span class="st">"gear"</span>,axis.font.family<span class="op">=</span><span class="st">"mono"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-4.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"mpg"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-5.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"mpg"</span>,<span class="st">"cyl"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-6.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"age"</span>,<span class="st">"trt"</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Removed 11 rows containing non-finite outside the scale range</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> (`stat_boxplot()`).</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Removed 11 rows containing missing values or values outside the scale range</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> (`geom_point()`).</span>
<span class="r-plt img"><img src="data-plots-7.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_hbars</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"carb"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
<span class="r-plt img"><img src="data-plots-4.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-8.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_hbars</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"carb"</span>, sec <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
<span class="r-plt img"><img src="data-plots-5.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-9.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Picking joint bandwidth of 1.38</span>
<span class="r-plt img"><img src="data-plots-6.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-10.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span>, z <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Picking joint bandwidth of 1.52</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>The following aesthetics were dropped during statistical transformation: <span style="color: #00BB00;">y</span> and</span>
@ -256,21 +272,21 @@ Beatiful violin plot"><meta property="og:image" content="https://agdamsbo.github
<span class="r-in"><span><span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>g <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">LETTERS</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">2</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span>, first <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span>, last <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Loading required package: ggplot2</span>
<span class="r-plt img"><img src="data-plots-7.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-11.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, color.group <span class="op">=</span> <span class="st">"sec"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-8.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-12.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, ter <span class="op">=</span> <span class="st">"g"</span>, color.group <span class="op">=</span> <span class="st">"sec"</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-plt img"><img src="data-plots-9.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-13.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"cyl"</span>, <span class="st">"gear"</span>, <span class="st">"am"</span>, color.group <span class="op">=</span> <span class="st">"pri"</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-plt img"><img src="data-plots-10.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-14.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="co">## In this case, the last plot as the secondary variable in wrong order</span></span></span>
<span class="r-in"><span><span class="co">## Dont know why...</span></span></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
@ -279,9 +295,9 @@ Beatiful violin plot"><meta property="og:image" content="https://agdamsbo.github
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-plt img"><img src="data-plots-11.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-15.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_scatter</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"wt"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-12.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-16.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_violin</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
@ -315,7 +331,7 @@ Beatiful violin plot"><meta property="og:image" content="https://agdamsbo.github
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
<span class="r-plt img"><img src="data-plots-13.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-17.png" alt="" width="700" height="433"></span>
</code></pre></div>
</div>
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