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Andreas Gammelgaard Damsbo 2025-03-19 09:14:36 +01:00
commit 04784a7a24
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34 changed files with 121 additions and 137 deletions
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29
R/regression_plot.R
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@ -15,15 +15,16 @@
#'
#' @examples
#' \dontrun{
#' mod <- lm(mpg ~ ., mtcars)
#' mod <- lm(mpg ~ ., default_parsing(mtcars))
#' p <- mod |>
#' gtsummary::tbl_regression() |>
#' plot(colour = "variable")
#' }
#'
plot.tbl_regression <- function(x,
# remove_header_rows = TRUE,
# remove_reference_rows = FALSE,
plot_ref = TRUE,
remove_header_rows = TRUE,
remove_reference_rows = FALSE,
...) {
# check_dots_empty()
gtsummary:::check_pkg_installed("ggstats")
@ -32,18 +33,22 @@ plot.tbl_regression <- function(x,
# gtsummary:::check_scalar_logical(remove_reference_rows)
df_coefs <- x$table_body
# if (isTRUE(remove_header_rows)) {
# df_coefs <- df_coefs |> dplyr::filter(!.data$header_row %in% TRUE)
# }
# if (isTRUE(remove_reference_rows)) {
# df_coefs <- df_coefs |> dplyr::filter(!.data$reference_row %in% TRUE)
# }
# browser()
browser()
if (isTRUE(remove_header_rows)) {
df_coefs <- df_coefs |> dplyr::filter(!header_row %in% TRUE)
}
if (isTRUE(remove_reference_rows)) {
df_coefs <- df_coefs |> dplyr::filter(!reference_row %in% TRUE)
}
# Removes redundant label
df_coefs$label[df_coefs$row_type == "label"] <- ""
df_coefs %>%
# Add estimate value to reference level
if (plot_ref == TRUE){
df_coefs[df_coefs$var_type == "categorical" & is.na(df_coefs$reference_row),"estimate"] <- if (x$inputs$exponentiate) 1 else 0}
df_coefs |>
ggstats::ggcoef_plot(exponentiate = x$inputs$exponentiate, ...)
}