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< a href = "#main" class = "visually-hidden-focusable" > Skip to contents< / a >
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< a class = "navbar-brand me-2" href = "../index.html" > freesearcheR< / a >
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< small class = "nav-text text-muted me-auto" data-bs-toggle = "tooltip" data-bs-placement = "bottom" title = "" > 25.2.1< / small >
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< li class = "nav-item" > < a class = "nav-link" href = "../ROADMAP.html" > Roadmap< / a > < / li >
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< li class = "nav-item" > < a class = "external-link nav-link" href = "https://github.com/agdamsbo/freesearcheR/" aria-label = "GitHub" > < span class = "fa fab fa-github fa-lg" > < / span > < / a > < / li >
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< h1 > Package index< / h1 >
< / div >
< div class = "section level2" >
< h2 id = "all-functions" > All functions< a class = "anchor" aria-label = "anchor" href = "#all-functions" > < / a > < / h2 >
< / div > < div class = "section level2" >
< dl > < dt >
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< code > < a href = "add_class_icon.html" > add_class_icon()< / a > < / code >
< / dt >
< dd > Convert class grid column to icon< / dd >
< / dl > < dl > < dt >
< code > < a href = "add_sparkline.html" > add_sparkline()< / a > < / code >
< / dt >
< dd > Add sparkline to datagrid< / dd >
< / dl > < dl > < dt >
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< code > < a href = "all_but.html" > all_but()< / a > < / code >
< / dt >
< dd > Select all from vector but< / dd >
< / dl > < dl > < dt >
< code > < a href = "append_list.html" > append_list()< / a > < / code >
< / dt >
< dd > Append list with named index< / dd >
< / dl > < dl > < dt >
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< code > < a href = "argsstring2list.html" > argsstring2list()< / a > < / code >
< / dt >
< dd > Convert string of arguments to list of arguments< / dd >
< / dl > < dl > < dt >
< code > < a href = "baseline_table.html" > baseline_table()< / a > < / code >
< / dt >
< dd > Print a flexible baseline characteristics table< / dd >
< / dl > < dl > < dt >
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< code > < a href = "clean_date.html" > clean_date()< / a > < / code >
< / dt >
< dd > Attempts at applying uniform date format< / dd >
< / dl > < dl > < dt >
< code > < a href = "clean_sep.html" > clean_sep()< / a > < / code >
< / dt >
< dd > gsub wrapper for piping with default values for separator substituting< / dd >
< / dl > < dl > < dt >
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< code > < a href = "contrast_text.html" > contrast_text()< / a > < / code >
< / dt >
< dd > Contrast Text Color< / dd >
< / dl > < dl > < dt >
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< code > < a href = "create_overview_datagrid.html" > create_overview_datagrid()< / a > < / code >
< / dt >
< dd > Create a data overview datagrid< / dd >
< / dl > < dl > < dt >
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< code > < a href = "custom_theme.html" > custom_theme()< / a > < / code >
< / dt >
< dd > Custom theme based on unity< / dd >
< / dl > < dl > < dt >
< code > < a href = "cut-variable.html" > cut_variable_ui()< / a > < / code > < code > < a href = "cut-variable.html" > cut_variable_server()< / a > < / code > < code > < a href = "cut-variable.html" > modal_cut_variable()< / a > < / code > < code > < a href = "cut-variable.html" > winbox_cut_variable()< / a > < / code >
< / dt >
< dd > Module to Convert Numeric to Factor< / dd >
< / dl > < dl > < dt >
< code > < a href = "cut.html" > cut(< i > < hms> < / i > )< / a > < / code > < code > < a href = "cut.html" > cut(< i > < POSIXt> < / i > )< / a > < / code > < code > < a href = "cut.html" > cut(< i > < POSIXct> < / i > )< / a > < / code > < code > < a href = "cut.html" > cut(< i > < Date> < / i > )< / a > < / code >
< / dt >
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< dd > Extended cutting function< / dd >
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< / dl > < dl > < dt >
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< code > < a href = "data-correlations.html" > data_correlations_ui()< / a > < / code > < code > < a href = "data-correlations.html" > data_correlations_server()< / a > < / code > < code > < a href = "data-correlations.html" > data_visuals_ui()< / a > < / code > < code > < a href = "data-correlations.html" > data_visuals_server()< / a > < / code >
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< / dt >
< dd > Data correlations evaluation module< / dd >
< / dl > < dl > < dt >
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< code > < a href = "data-plots.html" > plot_ridge()< / a > < / code > < code > < a href = "data-plots.html" > create_plot()< / a > < / code > < code > < a href = "data-plots.html" > plot_hbars()< / a > < / code > < code > < a href = "data-plots.html" > plot_violin()< / a > < / code > < code > < a href = "data-plots.html" > plot_scatter()< / a > < / code > < code > < a href = "data-plots.html" > plot_sankey()< / a > < / code >
< / dt >
< dd > Title< / dd >
< / dl > < dl > < dt >
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< code > < a href = "data-summary.html" > data_summary_ui()< / a > < / code > < code > < a href = "data-summary.html" > data_summary_server()< / a > < / code >
< / dt >
< dd > Data summary module< / dd >
< / dl > < dl > < dt >
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< code > < a href = "default_format_arguments.html" > default_format_arguments()< / a > < / code >
< / dt >
< dd > Defaults qmd formats< / dd >
< / dl > < dl > < dt >
< code > < a href = "default_parsing.html" > default_parsing()< / a > < / code >
< / dt >
< dd > Default data parsing< / dd >
< / dl > < dl > < dt >
< code > < a href = "factorize.html" > factorize()< / a > < / code >
< / dt >
< dd > Factorize variables in data.frame< / dd >
< / dl > < dl > < dt >
< code > < a href = "file_export.html" > file_export()< / a > < / code >
< / dt >
< dd > Title< / dd >
< / dl > < dl > < dt >
< code > < a href = "format_writer.html" > format_writer()< / a > < / code >
< / dt >
< dd > Merges list of named arguments for qmd header generation< / dd >
< / dl > < dl > < dt >
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< code > < a href = "get_fun_options.html" > get_fun_options()< / a > < / code >
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< / dt >
< dd > Get the function options based on the selected function description< / dd >
< / dl > < dl > < dt >
< code > < a href = "get_label.html" > get_label()< / a > < / code >
< / dt >
< dd > Print label, and if missing print variable name< / dd >
< / dl > < dl > < dt >
< code > < a href = "get_plot_options.html" > get_plot_options()< / a > < / code >
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< / dt >
< dd > Get the function options based on the selected function description< / dd >
< / dl > < dl > < dt >
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< code > < a href = "getfun.html" > getfun()< / a > < / code >
< / dt >
< dd > Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'< / dd >
< / dl > < dl > < dt >
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< code > < a href = "gg_theme_export.html" > gg_theme_export()< / a > < / code >
< / dt >
< dd > GGplot default theme for plotting export objects< / dd >
< / dl > < dl > < dt >
< code > < a href = "gg_theme_shiny.html" > gg_theme_shiny()< / a > < / code >
< / dt >
< dd > GGplot default theme for plotting in Shiny< / dd >
< / dl > < dl > < dt >
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< code > < a href = "index_embed.html" > index_embed()< / a > < / code >
< / dt >
< dd > Split vector by an index and embed addition< / dd >
< / dl > < dl > < dt >
< code > < a href = "is_any_class.html" > is_any_class()< / a > < / code >
< / dt >
< dd > Test class< / dd >
< / dl > < dl > < dt >
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< code > < a href = "is_consecutive.html" > is_consecutive()< / a > < / code >
< / dt >
< dd > Checks if elements in vector are equally spaced as indication of ID< / dd >
< / dl > < dl > < dt >
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< code > < a href = "is_datetime.html" > is_datetime()< / a > < / code >
< / dt >
< dd > Test is date/datetime/time< / dd >
< / dl > < dl > < dt >
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< code > < a href = "is_valid_redcap_url.html" > is_valid_redcap_url()< / a > < / code >
< / dt >
< dd > Title< / dd >
< / dl > < dl > < dt >
< code > < a href = "is_valid_token.html" > is_valid_token()< / a > < / code >
< / dt >
< dd > Validate REDCap token< / dd >
< / dl > < dl > < dt >
< code > < a href = "launch_freesearcheR.html" > launch_freesearcheR()< / a > < / code >
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< / dt >
< dd > Easily launch the freesearcheR app< / dd >
< / dl > < dl > < dt >
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< code > < a href = "line_break.html" > line_break()< / a > < / code >
< / dt >
< dd > Line breaking at given number of characters for nicely plotting labels< / dd >
< / dl > < dl > < dt >
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< code > < a href = "m_datafileUI.html" > m_datafileUI()< / a > < / code >
< / dt >
< dd > Shiny UI module to load a data file< / dd >
< / dl > < dl > < dt >
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< code > < a href = "merge_long.html" > merge_long()< / a > < / code >
< / dt >
< dd > Wrapper to pivot gtsummary table data to long for plotting< / dd >
< / dl > < dl > < dt >
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< code > < a href = "modify_qmd.html" > modify_qmd()< / a > < / code >
< / dt >
< dd > Wrapper to modify quarto file to render specific formats< / dd >
< / dl > < dl > < dt >
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< code > < a href = "outcome_type.html" > outcome_type()< / a > < / code >
< / dt >
< dd > Outcome data type assessment< / dd >
< / dl > < dl > < dt >
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< code > < a href = "overview_vars.html" > overview_vars()< / a > < / code >
< / dt >
< dd > Create a data overview data.frame ready for sparklines< / dd >
< / dl > < dl > < dt >
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< code > < a href = "plot.tbl_regression.html" > plot(< i > < tbl_regression> < / i > )< / a > < / code >
< / dt >
< dd > Regression coef plot from gtsummary. Slightly modified to pass on arguments< / dd >
< / dl > < dl > < dt >
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< code > < a href = "plot_sankey_single.html" > plot_sankey_single()< / a > < / code >
< / dt >
< dd > Beautiful sankey plot< / dd >
< / dl > < dl > < dt >
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< code > < a href = "possible_functions.html" > possible_functions()< / a > < / code >
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< / dt >
< dd > Get possible regression models< / dd >
< / dl > < dl > < dt >
< code > < a href = "possible_plots.html" > possible_plots()< / a > < / code >
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< / dt >
< dd > Get possible regression models< / dd >
< / dl > < dl > < dt >
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< code > < a href = "read_input.html" > read_input()< / a > < / code >
< / dt >
< dd > Flexible file import based on extension< / dd >
< / dl > < dl > < dt >
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< code > < a href = "redcap_read_shiny_module.html" > m_redcap_readUI()< / a > < / code > < code > < a href = "redcap_read_shiny_module.html" > m_redcap_readServer()< / a > < / code > < code > < a href = "redcap_read_shiny_module.html" > redcap_demo_app()< / a > < / code >
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< / dt >
< dd > Shiny module to browser and export REDCap data< / dd >
< / dl > < dl > < dt >
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< code > < a href = "regression_model.html" > regression_model()< / a > < / code > < code > < a href = "regression_model.html" > regression_model_uv()< / a > < / code > < code > < a href = "regression_model.html" > regression_model_list()< / a > < / code > < code > < a href = "regression_model.html" > regression_model_uv_list()< / a > < / code >
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< / dt >
< dd > Create a regression model programatically< / dd >
< / dl > < dl > < dt >
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< code > < a href = "regression_table.html" > regression_table()< / a > < / code >
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< / dt >
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< dd > Create table of regression model< / dd >
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< / dl > < dl > < dt >
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< code > < a href = "remove_empty_cols.html" > remove_empty_cols()< / a > < / code >
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< / dt >
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< dd > Removes columns with completenes below cutoff< / dd >
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< / dl > < dl > < dt >
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< code > < a href = "remove_na_attr.html" > remove_na_attr()< / a > < / code >
< / dt >
< dd > Remove NA labels< / dd >
< / dl > < dl > < dt >
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< code > < a href = "sankey_ready.html" > sankey_ready()< / a > < / code >
< / dt >
< dd > Readying data for sankey plot< / dd >
< / dl > < dl > < dt >
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< code > < a href = "shiny_freesearcheR.html" > shiny_freesearcheR()< / a > < / code >
< / dt >
< dd > Launch the freesearcheR tool locally< / dd >
< / dl > < dl > < dt >
< code > < a href = "specify_qmd_format.html" > specify_qmd_format()< / a > < / code >
< / dt >
< dd > Specify format arguments to include in qmd header/frontmatter< / dd >
< / dl > < dl > < dt >
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< code > < a href = "subset_types.html" > subset_types()< / a > < / code >
< / dt >
< dd > Easily subset by data type function< / dd >
< / dl > < dl > < dt >
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< code > < a href = "supported_functions.html" > supported_functions()< / a > < / code >
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< / dt >
< dd > Implemented functions< / dd >
< / dl > < dl > < dt >
< code > < a href = "supported_plots.html" > supported_plots()< / a > < / code >
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< / dt >
< dd > Implemented functions< / dd >
< / dl > < dl > < dt >
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< code > < a href = "tbl_merge.html" > tbl_merge()< / a > < / code >
< / dt >
< dd > A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.< / dd >
< / dl > < dl > < dt >
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< code > < a href = "update-factor.html" > update_factor_ui()< / a > < / code > < code > < a href = "update-factor.html" > update_factor_server()< / a > < / code > < code > < a href = "update-factor.html" > modal_update_factor()< / a > < / code >
< / dt >
< dd > Module to Reorder the Levels of a Factor Variable< / dd >
< / dl > < dl > < dt >
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< code > < a href = "update-variables.html" > update_variables_ui()< / a > < / code > < code > < a href = "update-variables.html" > update_variables_server()< / a > < / code >
< / dt >
< dd > Select, rename and convert variables< / dd >
< / dl > < dl > < dt >
< code > < a href = "update_variables_datagrid.html" > update_variables_datagrid()< / a > < / code >
< / dt >
< dd > Modified from the datamods pacakge< / dd >
< / dl > < dl > < dt >
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< code > < a href = "vertical_stacked_bars.html" > vertical_stacked_bars()< / a > < / code >
< / dt >
< dd > Vertical stacked bar plot wrapper< / dd >
< / dl > < dl > < dt >
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< code > < a href = "write_quarto.html" > write_quarto()< / a > < / code >
< / dt >
< dd > Wrapper to save data in RDS, load into specified qmd and render< / dd >
< / dl > < / div >
< / main > < / div >
< footer > < div class = "pkgdown-footer-left" >
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< p > Site built with < a href = "https://pkgdown.r-lib.org/" class = "external-link" > pkgdown< / a > 2.1.1.< / p >
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< / div >
< div class = "pkgdown-footer-right" >
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< p > Developed by Andreas Gammelgaard Damsbo. Provided without < strong > any warranty< / strong > .< / p >
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< / div >
< / footer > < / div >
< / body > < / html >
